Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22969 Brassica carinata HOM05D006526 ORTHO05D008496 1.4e-34 149.1 73 100.0
BcaB05g22970 Brassica carinata HOM05D006526 ORTHO05D008496 3.8e-21 104.4 55 94.5
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 3.3e-20 101.3 55 90.9
C01p31260 Brassica napus HOM05D006526 ORTHO05D008496 3.3e-20 101.3 55 90.9
BolC1t03065H Brassica oleracea HOM05D006526 ORTHO05D008496 3.3e-20 101.3 55 90.9
A01p25030 Brassica napus HOM05D006526 ORTHO05D008496 7.2e-20 100.1 55 89.1
BraA01t02414Z Brassica rapa HOM05D006526 ORTHO05D008496 7.2e-20 100.1 55 89.1
BcaB05g22967 Brassica carinata HOM05D006526 ORTHO05D008496 9.5e-20 99.8 55 89.1
Carub.0003s0016 Capsella rubella HOM05D006526 ORTHO05D008496 9.5e-20 99.8 55 89.1
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 1.6e-19 99.0 55 89.1
AT3G01920 Arabidopsis thaliana HOM05D006526 ORTHO05D008496 2.8e-19 98.2 55 87.3
CARHR075020 Cardamine hirsuta HOM05D006526 ORTHO05D008496 6.1e-19 97.1 55 83.6
Thhalv10000573m.g Eutrema salsugineum HOM05D006526 ORTHO05D008496 1.4e-18 95.9 54 87.0
Aa31LG5G11040 Aethionema arabicum HOM05D006526 ORTHO05D008496 3.0e-18 94.7 55 83.6
Cpa.g.sc171.15 Carica papaya HOM05D006526 ORTHO05D008496 3.4e-17 91.3 55 80.0
THA.LOC104821121 Tarenaya hassleriana HOM05D006526 ORTHO05D008496 4.4e-17 90.9 55 80.0
ClCG05G013530 Citrullus lanatus HOM05D006526 ORTHO05D008496 1.3e-16 89.4 55 78.2
Potri.001G330100 Populus trichocarpa HOM05D006526 ORTHO05D008496 2.2e-16 88.6 55 76.4
Sed0022734 Sechium edule HOM05D006526 ORTHO05D008496 2.2e-16 88.6 55 78.2
Atru.chr6.2570 Acer truncatum HOM05D006526 ORTHO05D008496 3.7e-16 87.8 55 76.4
COL.COLO4_13261 Corchorus olitorius HOM05D006526 ORTHO05D008496 3.7e-16 87.8 55 76.4
Gohir.D09G036900 Gossypium hirsutum HOM05D006526 ORTHO05D008496 3.7e-16 87.8 55 76.4
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 3.7e-16 87.8 55 74.5
AL3G10210 Arabidopsis lyrata HOM05D006526 ORTHO05D008496 4.9e-16 87.4 55 80.0
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 4.9e-16 87.4 55 76.4
GSVIVG01033093001 Vitis vinifera HOM05D006526 ORTHO05D008496 4.9e-16 87.4 55 76.4
Glyma.19G091200 Glycine max HOM05D006526 ORTHO05D008496 6.3e-16 87.0 55 72.7
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 6.3e-16 87.0 55 72.7
Thecc.04G036000 Theobroma cacao HOM05D006526 ORTHO05D008496 6.3e-16 87.0 55 76.4
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 8.3e-16 86.7 55 74.5
Gohir.A09G035700 Gossypium hirsutum HOM05D006526 ORTHO05D008496 8.3e-16 86.7 55 74.5
Oeu005097.1 Olea europaea HOM05D006526 ORTHO05D008496 1.1e-15 86.3 55 78.2
Dinv33336 Davidia involucrata HOM05D006526 ORTHO05D008496 1.4e-15 85.9 55 76.4
arahy.Tifrunner.gnm1.ann1.4N5YWB Arachis hypogaea HOM05D006526 ORTHO05D008496 1.8e-15 85.5 55 72.7
arahy.Tifrunner.gnm1.ann1.C96CVE Arachis hypogaea HOM05D006526 ORTHO05D008496 1.8e-15 85.5 55 72.7
TWI56G1218 Tripterygium wilfordii HOM05D006526 ORTHO05D008496 1.8e-15 85.5 55 74.5
CiPaw.03G055600 Carya illinoinensis HOM05D006526 ORTHO05D008496 4.1e-15 84.3 55 72.7
Gorai.006G042000 Gossypium raimondii HOM05D006526 ORTHO05D008496 4.1e-15 84.3 55 74.5
CANSAT64G1234 Cannabis sativa HOM05D006526 ORTHO05D008496 5.4e-15 84.0 55 72.7
Migut.K01466 Erythranthe guttata HOM05D006526 ORTHO05D008496 5.4e-15 84.0 55 70.9
Eucgr.J02351 Eucalyptus grandis HOM05D006526 ORTHO05D008496 5.4e-15 84.0 55 74.5
FAN05G0398 Fragaria x ananassa HOM05D002875 ORTHO05D003215 7.0e-15 83.6 56 69.6
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 7.0e-15 83.6 55 76.4
Manes.15G161000 Manihot esculenta HOM05D006526 ORTHO05D008496 7.0e-15 83.6 55 72.7
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 7.0e-15 83.6 55 70.9
Sabra16G0211400 Salix brachista HOM05D006526 ORTHO05D008496 7.0e-15 83.6 55 74.5
CSS0009464 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 9.2e-15 83.2 54 75.9
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 9.2e-15 83.2 55 70.9
PGSC0003DMG400020254 Solanum tuberosum HOM05D006526 ORTHO05D008496 9.2e-15 83.2 55 74.5
Lj1g0010270 Lotus japonicus HOM05D006526 ORTHO05D008496 1.2e-14 82.8 55 69.1
SGA_v2.0_scaffold47G17596 Striga asiatica HOM05D006526 ORTHO05D008496 1.2e-14 82.8 59 66.1
VMungo1383G1669 Vigna mungo HOM05D006526 ORTHO05D008496 1.2e-14 82.8 56 66.1
ATR0561G126 Amborella trichopoda HOM05D006526 ORTHO05D008496 1.6e-14 82.4 55 72.7
Haze_14876 Corylus avellana HOM05D006526 ORTHO05D008496 1.6e-14 82.4 62 64.5
CAN.G473.100 Capsicum annuum HOM05D006526 ORTHO05D008496 2.0e-14 82.0 55 72.7
Duzib147G1379 Durio zibethinus HOM05D006526 ORTHO05D008496 2.0e-14 82.0 55 72.7
Ca_12965_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 2.7e-14 81.6 58 67.2
Peaxi162Scf00420g00560 Petunia axillaris HOM05D006526 ORTHO05D008496 2.7e-14 81.6 55 72.7
Solyc02g094150.4 Solanum lycopersicum HOM05D006526 ORTHO05D008496 2.7e-14 81.6 55 72.7
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 2.7e-14 81.6 55 72.7
MSTRG.3258 Avicennia marina HOM05D006526 ORTHO05D008496 3.5e-14 81.3 55 72.7
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 3.5e-14 81.3 55 70.9
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 3.5e-14 81.3 55 72.7
Nitab4.5_0002050g0140 Nicotiana tabacum HOM05D006526 ORTHO05D008496 3.5e-14 81.3 55 72.7
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 3.5e-14 81.3 55 70.9
Actinidia05903 Actinidia chinensis HOM05D006526 ORTHO05D008496 4.6e-14 80.9 55 74.5
Cfa007227 Carpinus fangiana HOM05D006526 ORTHO05D008496 4.6e-14 80.9 55 70.9
SalBow7G1947 Salvia bowleyana HOM05D006526 ORTHO05D008496 1.0e-13 79.7 54 72.2
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 1.7e-13 79.0 55 69.1
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 1.7e-13 79.0 55 69.1
Nitab4.5_0010204g0040 Nicotiana tabacum HOM05D006526 ORTHO05D008496 1.7e-13 79.0 55 70.9
Aqoxy3G01551 Aquilegia oxysepala HOM05D006526 ORTHO05D008496 2.9e-13 78.2 55 69.1
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 2.9e-13 78.2 55 72.7
Actinidia36203 Actinidia chinensis HOM05D006526 ORTHO05D008496 3.9e-13 77.8 55 70.9
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 3.9e-13 77.8 55 70.9
RcHm_v2.0_Chr2g0175561 Rosa chinensis HOM05D006526 ORTHO05D008496 3.9e-13 77.8 55 67.3
Nn4g22325 Nelumbo nucifera HOM05D006526 ORTHO05D008496 5.0e-13 77.4 55 65.5
CDE05G2481 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 8.6e-13 76.6 55 65.5
DCAR_000965 Daucus carota HOM05D006526 ORTHO05D008496 1.1e-12 76.3 55 69.1
Sc16g0003120 Simmondsia chinensis HOM05D006526 ORTHO05D008496 1.1e-12 76.3 54 61.1
QL02p071425 Quercus lobata HOM05D006526 ORTHO05D008496 1.9e-12 75.5 55 69.1
vmacro05958 Vaccinium macrocarpon HOM05D006526 ORTHO05D008496 1.9e-12 75.5 55 67.3
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 3.3e-12 74.7 55 67.3
Medtr6g045607 Medicago truncatula HOM05D006526 ORTHO05D008496 3.3e-12 74.7 50 68.0
Prupe.3G306300 Prunus persica HOM05D006526 ORTHO05D008496 5.6e-12 73.9 55 61.8
Zm00001eb175140 Zea mays HOM05D006526 ORTHO05D008496 1.6e-11 72.4 55 61.8
MD09G1010800 Malus domestica HOM05D006526 ORTHO05D008496 2.1e-11 72.0 55 60.0
unitig_88.g27695 Utricularia gibba HOM05D006526 ORTHO05D008496 2.1e-11 72.0 60 55.0
Os08g0531300 Oryza sativa ssp. japonica HOM05D006526 ORTHO05D008496 2.8e-11 71.6 55 60.0
PSO017G5829 Papaver somniferum HOM05D006526 ORTHO05D008496 3.6e-11 71.2 55 67.3
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 3.6e-11 71.2 55 69.1
CDE06G2358 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 4.7e-11 70.9 62 61.3
MBI11_g23476_MAGBIO Magnolia biondii HOM05D006526 ORTHO05D008496 4.7e-11 70.9 54 66.7
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 6.1e-11 70.5 55 61.8
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 1.8e-10 68.9 55 65.5
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 2.0e-09 65.5 55 60.0
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 4.4e-09 64.3 56 53.6
AUR62017828 Chenopodium quinoa HOM05D006526 ORTHO05D008496 7.5e-09 63.5 55 58.2
AagrBONN_evm.TU.Sc2ySwM_228.1921 Anthoceros agrestis HOM05D006526 ORTHO05D008496 2.2e-08 62.0 56 51.8
FAN02G2201 Fragaria x ananassa HOM05D002323 ORTHO05D002470 1.9e-07 58.9 45 57.8
Hund04346 Selenicereus undatus HOM05D006526 ORTHO05D008496 5.4e-07 57.4 55 54.5
SMO137G0097 Selaginella moellendorffii HOM05D006526 ORTHO05D008496 9.2e-07 56.6 56 50.0
TAR629G1757 Trochodendron aralioides HOM05D006526 ORTHO05D008496 2.7e-06 55.1 32 81.2


User provided reference genes

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