Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22927 Brassica carinata HOM05D002197 ORTHO05D002462 6.8e-63 243.8 122 100.0
BcaB02g11173 Brassica carinata HOM05D002197 ORTHO05D002462 3.0e-42 175.3 96 90.6
BcaB03g16354 Brassica carinata HOM05D002197 ORTHO05D002462 6.2e-40 167.5 96 88.5
BcaC03g16747 Brassica carinata HOM05D002197 ORTHO05D002462 3.8e-21 105.1 114 54.4
C02p46210 Brassica napus HOM05D002197 ORTHO05D002462 3.8e-21 105.1 114 54.4
BolC2t10677H Brassica oleracea HOM05D002197 ORTHO05D002462 8.4e-21 104.0 114 53.5
A09p21790 Brassica napus HOM05D002197 ORTHO05D002462 1.9e-20 102.8 114 53.5
BolC9t55652H Brassica oleracea HOM05D002197 ORTHO05D002462 2.1e-19 99.4 114 52.6
BcaC04g21761 Brassica carinata HOM05D002197 ORTHO05D002462 2.7e-19 99.0 114 52.6
A02p29130 Brassica napus HOM05D002197 ORTHO05D002462 3.5e-19 98.6 114 53.5
BraA02t07946Z Brassica rapa HOM05D002197 ORTHO05D002462 3.5e-19 98.6 114 53.5
BcaB07g30455 Brassica carinata HOM05D002197 ORTHO05D002462 1.3e-18 96.7 113 52.2
BraA09t37782Z Brassica rapa HOM05D002197 ORTHO05D002462 8.7e-18 94.0 114 50.9
Sp2g10360 Schrenkiella parvula HOM05D002197 ORTHO05D002462 8.7e-18 94.0 114 50.0
BcaB07g30883 Brassica carinata HOM05D002197 ORTHO05D002462 1.1e-17 93.6 114 50.0
BcaC06g31554 Brassica carinata HOM05D002197 ORTHO05D002462 1.9e-17 92.8 114 49.1
Thhalv10000944m.g Eutrema salsugineum HOM05D002197 ORTHO05D002462 7.3e-17 90.9 115 50.4
CARHR176660 Cardamine hirsuta HOM05D002197 ORTHO05D002462 5.3e-15 84.7 114 46.5
BcaC06g31552 Brassica carinata HOM05D002197 ORTHO05D002462 1.2e-14 83.6 80 58.8
Carub.0008s0270 Capsella rubella HOM05D002197 ORTHO05D002462 7.6e-14 80.9 115 47.0
AT5G45410 Arabidopsis thaliana HOM05D002197 ORTHO05D002462 1.9e-12 76.3 111 45.0
AL1G45730 Arabidopsis lyrata HOM05D002197 ORTHO05D002462 4.2e-12 75.1 113 43.4
A06p46610 Brassica napus HOM05D002197 ORTHO05D002462 4.2e-12 75.1 73 57.5
Aa31LG9G7590 Aethionema arabicum HOM05D002197 ORTHO05D002462 7.9e-11 70.9 113 42.5
THA.LOC104806191 Tarenaya hassleriana HOM05D002197 ORTHO05D002462 4.3e-09 65.1 109 40.4
QL08p056571 Quercus lobata HOM05D002197 ORTHO05D002462 2.1e-08 62.8 82 43.9
TAR375G0282 Trochodendron aralioides HOM05D002197 ORTHO05D002462 3.1e-07 58.9 106 39.6
A06p27900 Brassica napus HOM05D002197 ORTHO05D002462 4.0e-07 58.5 108 41.7
Prupe.2G215800 Prunus persica HOM05D002197 ORTHO05D002462 5.3e-07 58.2 81 44.4
Hma1.2p1_0544F.1_g175460 Hydrangea macrophylla HOM05D002197 ORTHO05D002462 6.9e-07 57.8 103 40.8
Hma1.2p1_2754F.1_g327940 Hydrangea macrophylla HOM05D002197 ORTHO05D002462 6.9e-07 57.8 103 40.8
Manes.17G004500 Manihot esculenta HOM05D002197 ORTHO05D002462 6.9e-07 57.8 110 39.1
PGR031G1376 Punica granatum HOM05D002197 ORTHO05D002462 6.9e-07 57.8 111 36.0
THA.LOC104811053 Tarenaya hassleriana HOM05D002197 ORTHO05D002462 6.9e-07 57.8 108 36.1
Haze_16920 Corylus avellana HOM05D002197 ORTHO05D002462 9.0e-07 57.4 81 42.0
Phvul.007G092800 Phaseolus vulgaris HOM05D002197 ORTHO05D002462 9.0e-07 57.4 78 44.9
Thecc.03G317400 Theobroma cacao HOM05D002197 ORTHO05D002462 9.0e-07 57.4 101 38.6
Aa31LG6G1810 Aethionema arabicum HOM05D002197 ORTHO05D002462 1.2e-06 57.0 113 37.2
Glyma.10G212700 Glycine max HOM05D002197 ORTHO05D002462 1.2e-06 57.0 78 44.9
Glyma.20G178300 Glycine max HOM05D002197 ORTHO05D002462 1.2e-06 57.0 78 44.9
Cpa.g.sc466.8 Carica papaya HOM05D002197 ORTHO05D002462 2.0e-06 56.2 85 41.2
Actinidia03041 Actinidia chinensis HOM05D002197 ORTHO05D002462 2.6e-06 55.8 78 44.9
CiPaw.02G175300 Carya illinoinensis HOM05D002197 ORTHO05D002462 2.6e-06 55.8 82 40.2
Oeu026455.1 Olea europaea HOM05D002197 ORTHO05D002462 2.6e-06 55.8 78 42.3
Cpa.g.sc137.12 Carica papaya HOM05D002197 ORTHO05D002462 3.4e-06 55.5 99 38.4
Gohir.D12G205500 Gossypium hirsutum HOM05D002197 ORTHO05D002462 3.4e-06 55.5 113 38.1
MD01G1110900 Malus domestica HOM05D002197 ORTHO05D002462 3.4e-06 55.5 84 38.1
Sc01g0007010 Simmondsia chinensis HOM05D002197 ORTHO05D002462 3.4e-06 55.5 108 37.0
Actinidia38261 Actinidia chinensis HOM05D002197 ORTHO05D002462 4.5e-06 55.1 78 43.6
Duzib205G0403 Durio zibethinus HOM05D002197 ORTHO05D002462 4.5e-06 55.1 102 40.2
Gohir.D13G023600 Gossypium hirsutum HOM05D002197 ORTHO05D002462 4.5e-06 55.1 102 39.2
Gorai.013G026400 Gossypium raimondii HOM05D002197 ORTHO05D002462 4.5e-06 55.1 102 39.2
Manes.10G044300 Manihot esculenta HOM05D002197 ORTHO05D002462 4.5e-06 55.1 81 40.7
PSO063G6836 Papaver somniferum HOM05D002197 ORTHO05D002462 4.5e-06 55.1 113 39.8
PSO782G0635 Papaver somniferum HOM05D002197 ORTHO05D002462 4.5e-06 55.1 113 39.8
SalBow4G1669 Salvia bowleyana HOM05D002197 ORTHO05D002462 4.5e-06 55.1 108 38.9
CSS0017692 Camellia sinensis var. sinensis HOM05D002197 ORTHO05D002462 5.8e-06 54.7 78 44.9
CSS0034334 Camellia sinensis var. sinensis HOM05D002197 ORTHO05D002462 5.8e-06 54.7 78 44.9
Gohir.A12G202800 Gossypium hirsutum HOM05D002197 ORTHO05D002462 5.8e-06 54.7 113 37.2
Gorai.008G220400 Gossypium raimondii HOM05D002197 ORTHO05D002462 5.8e-06 54.7 113 37.2
VMungo0720G0801 Vigna mungo HOM05D002197 ORTHO05D002462 5.8e-06 54.7 78 42.3
Dinv31357 Davidia involucrata HOM05D002197 ORTHO05D002462 7.6e-06 54.3 100 40.0
unitig_37.g12305 Utricularia gibba HOM05D002197 ORTHO05D002462 7.6e-06 54.3 80 41.2
Cfa012587 Carpinus fangiana HOM05D002197 ORTHO05D002462 1.0e-05 53.9 106 40.6
Ca_10582_v3 Cicer arietinum L. HOM05D002197 ORTHO05D002462 1.0e-05 53.9 78 42.3
Eucgr.J01105 Eucalyptus grandis HOM05D002197 ORTHO05D002462 1.0e-05 53.9 81 42.0
Gorai.009G314700 Gossypium raimondii HOM05D002197 ORTHO05D002462 1.0e-05 53.9 98 36.7
MD05G1255700 Malus domestica HOM05D002197 ORTHO05D002462 1.0e-05 53.9 76 39.5
TPR.G1773 Trifolium pratense HOM05D002197 ORTHO05D002462 1.0e-05 53.9 78 42.3


User provided reference genes

Program Settings