Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 0.0e+00 2009.6 1004 100.0
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 0.0e+00 1670.2 969 88.2
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 0.0e+00 1668.3 969 88.5
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 0.0e+00 1567.0 968 84.5
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 0.0e+00 1565.1 1029 80.5
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 0.0e+00 1496.9 993 79.5
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 0.0e+00 1481.1 968 81.3
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 0.0e+00 1451.8 1008 75.8
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 0.0e+00 1441.4 1003 75.8
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 0.0e+00 1436.8 1010 75.3
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 0.0e+00 1370.1 978 75.5
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 0.0e+00 1222.2 1015 65.6
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 2.8e-295 1018.8 979 58.9
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 3.1e-286 988.8 626 83.5
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 7.4e-232 808.1 1082 45.6
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 1.0e-228 797.7 1049 46.6
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 1.7e-228 797.0 1008 47.2
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 1.4e-227 793.9 1024 47.0
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 3.2e-227 792.7 1028 47.7
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 1.5e-224 783.9 1069 45.2
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 3.3e-224 782.7 1140 43.0
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 1.7e-223 780.4 1093 45.1
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 2.2e-220 770.0 1169 43.1
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 1.9e-219 766.9 1129 43.5
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 9.4e-219 764.6 1108 43.1
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 1.2e-218 764.2 1037 45.9
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 2.3e-217 760.0 1035 45.6
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 8.8e-217 758.1 1140 42.3
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 5.7e-216 755.4 1159 42.0
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 6.3e-215 751.9 1135 42.7
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 1.2e-213 747.7 1096 42.2
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 2.7e-213 746.5 1139 42.1
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 5.9e-213 745.3 1141 42.1
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 1.0e-212 744.6 1093 43.9
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 8.5e-212 741.5 1040 45.1
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 1.9e-211 740.3 1120 41.0
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 2.5e-211 740.0 1184 41.0
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 4.2e-211 739.2 1116 41.2
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 7.2e-211 738.4 1145 42.3
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 1.8e-209 733.8 1132 42.3
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 1.2e-208 731.1 1140 41.2
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 5.7e-208 728.8 1122 42.0
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 1.3e-207 727.6 1142 41.7
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 1.3e-207 727.6 1143 40.5
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 1.7e-207 727.2 1009 43.4
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 1.8e-206 723.8 1095 42.6
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 2.4e-206 723.4 1062 43.0
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 3.5e-205 719.5 986 44.6
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 1.3e-204 717.6 998 45.0
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.7e-204 717.2 883 46.2
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.5e-203 714.1 1161 41.1
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 7.2e-203 711.8 964 44.6
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 2.7e-202 709.9 1005 43.7
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 3.6e-202 709.5 1030 44.3
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 3.6e-202 709.5 1027 43.0
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 4.7e-202 709.1 1146 39.9
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 6.8e-201 705.3 1133 40.3
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 1.3e-199 701.0 1018 43.8
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 1.7e-199 700.7 850 47.4
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 1.4e-198 697.6 1142 40.6
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 2.4e-198 696.8 1008 42.5
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 3.1e-198 696.4 1222 39.5
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 3.1e-198 696.4 988 42.6
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 9.2e-198 694.9 1127 40.6
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 7.7e-197 691.8 1031 40.7
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 1.0e-196 691.4 1006 43.9
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 1.0e-196 691.4 1085 41.5
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 2.9e-196 689.9 1016 42.6
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 2.9e-196 689.9 1196 38.5
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 1.9e-195 687.2 598 59.9
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 2.1e-194 683.7 1072 41.9
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 2.8e-194 683.3 1112 40.6
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 6.8e-193 678.7 1018 41.5
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 1.5e-192 677.6 1097 40.8
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 3.4e-192 676.4 1041 42.1
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 4.9e-191 672.5 1093 39.2
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 6.4e-191 672.2 1075 41.6
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 8.3e-191 671.8 1083 42.2
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 2.4e-190 670.2 553 60.2
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 4.1e-190 669.5 1140 39.6
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 5.0e-188 662.5 1095 40.3
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 1.8e-185 654.1 884 43.6
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 6.8e-185 652.1 1035 40.6
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 8.9e-185 651.7 996 41.8
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 1.5e-184 651.0 1140 39.4
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 6.4e-183 645.6 1177 38.7
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 6.4e-183 645.6 948 42.1
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 6.4e-183 645.6 1108 38.8
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 3.0e-180 636.7 1109 40.2
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 7.5e-176 622.1 971 40.2
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 7.5e-176 622.1 951 41.3
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 7.8e-173 612.1 999 39.8
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 2.3e-169 600.5 1041 39.0
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 2.4e-166 590.5 902 42.4
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 6.6e-164 582.4 1110 37.0
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 1.4e-161 574.7 1034 37.8
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 1.7e-159 567.8 975 38.5
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 6.4e-159 565.8 1008 39.0
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 8.7e-156 555.4 574 51.7
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 3.1e-153 547.0 694 45.7
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 2.1e-146 524.2 1148 35.6
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 1.3e-127 461.8 889 37.1
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 7.9e-125 452.6 414 56.0
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 4.1e-121 440.3 742 35.7
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 8.5e-119 432.6 787 38.9
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.2e-118 430.6 514 49.2
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 3.9e-116 423.7 312 66.3
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 3.9e-116 423.7 549 43.4
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 1.5e-112 411.8 1132 31.4
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 2.9e-111 407.5 505 41.8
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 3.3e-107 394.0 848 35.1
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 4.5e-104 383.6 515 42.5
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 1.2e-101 375.6 803 34.5
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 4.0e-100 370.5 878 34.2
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 3.3e-99 367.5 693 37.5
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 2.7e-64 251.5 229 57.2
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 3.5e-64 251.1 637 31.6
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 2.3e-63 248.4 221 55.7
C03p37040 Brassica napus HOM05D000922 ORTHO05D007418 1.2e-27 129.8 89 75.3
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 2.0e-27 129.0 272 31.6
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 5.3e-20 104.4 200 34.5
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 6.0e-16 90.9 80 56.2
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 3.0e-15 88.6 104 47.1
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 3.0e-15 88.6 57 64.9
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 3.9e-15 88.2 79 55.7
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 6.7e-15 87.4 162 39.5
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 6.7e-15 87.4 64 62.5
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 1.1e-14 86.7 68 61.8
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 3.3e-14 85.1 53 69.8
vmacro19400 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 5.7e-14 84.3 503 26.0
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 6.9e-12 77.4 126 43.7
FAN04G1664 Fragaria x ananassa HOM05D000922 ORTHO05D007418 3.9e-07 61.6 90 46.7
Cfa000646 Carpinus fangiana HOM05D000922 ORTHO05D007418 6.7e-07 60.8 34 70.6
Lalb_Chr23g0273291 Lupinus albus HOM05D000922 ORTHO05D007418 4.3e-06 58.2 568 23.9


User provided reference genes

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