Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22897 Brassica carinata HOM05D005886 ORTHO05D007512 3.0e-69 265.0 130 100.0
BolC1t00631H Brassica oleracea HOM05D005886 ORTHO05D007512 5.7e-68 260.8 129 97.7
BcaC09g52051 Brassica carinata HOM05D005886 ORTHO05D007512 7.5e-68 260.4 129 97.7
C01p06350 Brassica napus HOM05D005886 ORTHO05D007512 1.3e-67 259.6 129 97.7
A01p05780 Brassica napus HOM05D005886 ORTHO05D007512 2.2e-67 258.8 129 96.1
BraA01t00547Z Brassica rapa HOM05D005886 ORTHO05D007512 2.2e-67 258.8 129 96.1
Sp7g30380 Schrenkiella parvula HOM05D005886 ORTHO05D007512 7.0e-66 253.8 129 95.3
Carub.0007s0794 Capsella rubella HOM05D005886 ORTHO05D007512 2.7e-65 251.9 129 93.8
AL7G19160 Arabidopsis lyrata HOM05D005886 ORTHO05D007512 3.8e-64 248.1 130 93.1
Thhalv10026176m.g Eutrema salsugineum HOM05D005886 ORTHO05D007512 5.0e-64 247.7 129 93.0
AT4G32605 Arabidopsis thaliana HOM05D005886 ORTHO05D007512 1.6e-62 242.7 130 91.5
Aa31sc91G60 Aethionema arabicum HOM05D005886 ORTHO05D007512 5.5e-55 217.6 133 82.0
CARHR240580 Cardamine hirsuta HOM05D005886 ORTHO05D007512 4.7e-54 214.5 109 93.6
THA.LOC104803777 Tarenaya hassleriana HOM05D005886 ORTHO05D007512 1.8e-53 212.6 130 80.0
Cpa.g.sc33.126 Carica papaya HOM05D005886 ORTHO05D007512 1.4e-50 203.0 133 72.9
Dinv03810 Davidia involucrata HOM05D005886 ORTHO05D007512 8.6e-48 193.7 132 71.2
Actinidia06678 Actinidia chinensis HOM05D005886 ORTHO05D007512 1.5e-47 193.0 133 69.9
COL.COLO4_37594 Corchorus olitorius HOM05D005886 ORTHO05D007512 6.1e-46 187.6 137 67.2
Nn6g34619 Nelumbo nucifera HOM05D005886 ORTHO05D007512 8.0e-46 187.2 132 67.4
Rhsim03G0094200 Rhododendron simsii HOM05D005886 ORTHO05D007512 1.4e-45 186.4 132 66.7
TWI63G1702 Tripterygium wilfordii HOM05D005886 ORTHO05D007512 2.3e-45 185.7 133 71.4
Lj3A922T58 Lonicera japonica HOM05D005886 ORTHO05D007512 4.0e-45 184.9 132 68.2
Manes.10G059400 Manihot esculenta HOM05D005886 ORTHO05D007512 5.2e-45 184.5 133 66.9
Nitab4.5_0011494g0010 Nicotiana tabacum HOM05D005886 ORTHO05D007512 6.8e-45 184.1 133 66.2
CSS0019543 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 8.9e-45 183.7 133 68.4
CSS0026439 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 8.9e-45 183.7 133 68.4
Gohir.A03G069600 Gossypium hirsutum HOM05D005886 ORTHO05D007512 1.2e-44 183.3 132 68.9
Sed0002183 Sechium edule HOM05D005886 ORTHO05D007512 1.2e-44 183.3 133 66.9
Lj3A921T39 Lonicera japonica HOM05D005886 ORTHO05D007512 1.5e-44 183.0 131 67.9
Thecc.03G100000 Theobroma cacao HOM05D005886 ORTHO05D007512 1.5e-44 183.0 134 67.9
CSS0035441 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 2.0e-44 182.6 131 68.7
Eucgr.G02665 Eucalyptus grandis HOM05D005886 ORTHO05D007512 2.0e-44 182.6 134 66.4
MBI11_g01323_MAGBIO Magnolia biondii HOM05D005886 ORTHO05D007512 2.0e-44 182.6 135 65.9
Sc09g0004780 Simmondsia chinensis HOM05D005886 ORTHO05D007512 2.6e-44 182.2 132 67.4
Gohir.D03G096100 Gossypium hirsutum HOM05D005886 ORTHO05D007512 3.4e-44 181.8 133 67.7
Gorai.003G100800 Gossypium raimondii HOM05D005886 ORTHO05D007512 3.4e-44 181.8 133 67.7
Hma1.2p1_0098F.1_g048230 Hydrangea macrophylla HOM05D005886 ORTHO05D007512 3.4e-44 181.8 133 66.9
CiPaw.13G045200 Carya illinoinensis HOM05D005886 ORTHO05D007512 5.8e-44 181.0 135 68.1
CAN.G143.55 Capsicum annuum HOM05D005886 ORTHO05D007512 2.9e-43 178.7 132 65.2
Prupe.2G074600 Prunus persica HOM05D005886 ORTHO05D007512 2.9e-43 178.7 137 64.2
Duzib205G1746 Durio zibethinus HOM05D005886 ORTHO05D007512 6.4e-43 177.6 149 61.7
PGR142G2015 Punica granatum HOM05D005886 ORTHO05D007512 8.3e-43 177.2 136 65.4
PGSC0003DMG400000991 Solanum tuberosum HOM05D005886 ORTHO05D007512 1.1e-42 176.8 133 65.4
Potri.010G244500 Populus trichocarpa HOM05D005886 ORTHO05D007512 1.4e-42 176.4 134 63.4
Sopen11g002300 Solanum pennellii HOM05D005886 ORTHO05D007512 1.9e-42 176.0 133 64.7
MBI11_g46414_MAGBIO Magnolia biondii HOM05D005886 ORTHO05D007512 3.2e-42 175.3 116 72.4
Solyc11g006400.2 Solanum lycopersicum HOM05D005886 ORTHO05D007512 3.2e-42 175.3 133 64.7
TAR623G1656 Trochodendron aralioides HOM05D005886 ORTHO05D007512 3.2e-42 175.3 133 64.7
Atru.chr12.1089 Acer truncatum HOM05D005886 ORTHO05D007512 4.1e-42 174.9 127 67.7
Sabra10G0191000 Salix brachista HOM05D005886 ORTHO05D007512 4.1e-42 174.9 134 64.9
FvH4_7g05470 Fragaria vesca HOM05D005886 ORTHO05D007512 5.4e-42 174.5 131 67.9
FAN01G0807 Fragaria x ananassa HOM05D005886 ORTHO05D007512 5.4e-42 174.5 129 69.0
FAN01G1003 Fragaria x ananassa HOM05D005886 ORTHO05D007512 5.4e-42 174.5 131 67.9
FAN10G0591 Fragaria x ananassa HOM05D005886 ORTHO05D007512 5.4e-42 174.5 131 67.9
FAN10G3562 Fragaria x ananassa HOM05D005886 ORTHO05D007512 1.6e-41 172.9 133 67.7
Migut.F00830 Erythranthe guttata HOM05D005886 ORTHO05D007512 4.6e-41 171.4 134 62.7
FvH4_7g05420 Fragaria vesca HOM05D005886 ORTHO05D007512 4.6e-41 171.4 129 68.2
Cc02_g09270 Coffea canephora HOM05D005886 ORTHO05D007512 6.0e-41 171.0 137 64.2
Cfa004262 Carpinus fangiana HOM05D005886 ORTHO05D007512 7.8e-41 170.6 135 63.7
Lalb_Chr04g0248371 Lupinus albus HOM05D005886 ORTHO05D007512 7.8e-41 170.6 130 67.7
ClCG08G008440 Citrullus lanatus HOM05D005886 ORTHO05D007512 1.0e-40 170.2 131 64.1
CANSAT56G3685 Cannabis sativa HOM05D005886 ORTHO05D007512 1.3e-40 169.9 139 63.3
MSTRG.9023 Avicennia marina HOM05D005886 ORTHO05D007512 1.7e-40 169.5 134 59.7
FAN03G3046 Fragaria x ananassa HOM05D005886 ORTHO05D007512 2.3e-40 169.1 135 65.2
Hund07230 Selenicereus undatus HOM05D005886 ORTHO05D007512 2.3e-40 169.1 131 67.2
TPR.G1192 Trifolium pratense HOM05D005886 ORTHO05D007512 2.3e-40 169.1 130 63.8
Potri.008G015600 Populus trichocarpa HOM05D005886 ORTHO05D007512 3.0e-40 168.7 134 60.4
Sabra08G0009500 Salix brachista HOM05D005886 ORTHO05D007512 3.0e-40 168.7 132 61.4
Phvul.008G268400 Phaseolus vulgaris HOM05D005886 ORTHO05D007512 5.0e-40 167.9 129 65.1
EL10Ac4g08740 Beta vulgaris HOM05D005886 ORTHO05D007512 6.6e-40 167.5 133 63.2
Ca_30698_v3 Cicer arietinum L. HOM05D005886 ORTHO05D007512 1.1e-39 166.8 133 63.9
Ciclev10016560m.g Citrus clementina HOM05D005886 ORTHO05D007512 2.5e-39 165.6 134 62.7
arahy.Tifrunner.gnm1.ann1.884D9P Arachis hypogaea HOM05D005886 ORTHO05D007512 4.3e-39 164.9 134 64.9
arahy.Tifrunner.gnm1.ann1.VD7X19 Arachis hypogaea HOM05D005886 ORTHO05D007512 4.3e-39 164.9 134 64.9
Glyma.14G022800 Glycine max HOM05D005886 ORTHO05D007512 9.5e-39 163.7 129 63.6
MD02G1258000 Malus domestica HOM05D005886 ORTHO05D007512 9.5e-39 163.7 135 60.7
DCAR_025632 Daucus carota HOM05D005886 ORTHO05D007512 1.6e-38 162.9 132 60.6
HanXRQChr07g0194431 Helianthus annuus HOM05D005886 ORTHO05D007512 1.6e-38 162.9 134 61.2
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 2.1e-38 162.5 129 61.2
Glyma.02G291900 Glycine max HOM05D005886 ORTHO05D007512 2.1e-38 162.5 129 63.6
Lsat_1_v5_gn_2_106281 Lactuca sativa HOM05D005886 ORTHO05D007512 2.1e-38 162.5 134 60.4
SalBow3G3384 Salvia bowleyana HOM05D005886 ORTHO05D007512 2.1e-38 162.5 134 58.2
Aqoxy1G00613 Aquilegia oxysepala HOM05D005886 ORTHO05D007512 2.8e-38 162.2 136 58.1
LjContig00272g0011155 Lotus japonicus HOM05D005886 ORTHO05D007512 3.6e-38 161.8 130 63.1
SGA_v2.0_scaffold13G06426 Striga asiatica HOM05D005886 ORTHO05D007512 3.6e-38 161.8 134 56.7
Medtr5g093000 Medicago truncatula HOM05D005886 ORTHO05D007512 6.2e-38 161.0 130 64.6
QL04p048796 Quercus lobata HOM05D005886 ORTHO05D007512 6.2e-38 161.0 136 61.0
ECA238G0088 Erigeron canadensis HOM05D005886 ORTHO05D007512 1.1e-37 160.2 134 61.2
VMungo0647G0838 Vigna mungo HOM05D005886 ORTHO05D007512 1.8e-37 159.5 129 61.2
Psat2g011680 Pisum sativum HOM05D005886 ORTHO05D007512 1.2e-36 156.8 133 61.7
RcHm_v2.0_Chr1g0332231 Rosa chinensis HOM05D005886 ORTHO05D007512 4.4e-36 154.8 139 59.0
arahy.Tifrunner.gnm1.ann1.AJNI4B Arachis hypogaea HOM05D005886 ORTHO05D007512 5.8e-36 154.5 136 60.3
arahy.Tifrunner.gnm1.ann1.G6ZNRX Arachis hypogaea HOM05D005886 ORTHO05D007512 5.8e-36 154.5 136 60.3
arahy.Tifrunner.gnm1.ann1.V9EI6C Arachis hypogaea HOM05D005886 ORTHO05D007512 5.8e-36 154.5 136 60.3
arahy.Tifrunner.gnm1.ann1.WENH69 Arachis hypogaea HOM05D005886 ORTHO05D007512 5.8e-36 154.5 136 60.3
CDE10G0808 Ceratophyllum demersum HOM05D005886 ORTHO05D007512 7.5e-36 154.1 132 56.1
MELO3C019914.2 Cucumis melo HOM05D005886 ORTHO05D007512 2.2e-35 152.5 134 58.2
HPP92_013285 Vanilla planifolia HOM05D005886 ORTHO05D007512 3.7e-35 151.8 136 58.8
HPP92_013299 Vanilla planifolia HOM05D005886 ORTHO05D007512 3.7e-35 151.8 136 58.8
vmacro07275 Vaccinium macrocarpon HOM05D005886 ORTHO05D007512 1.1e-34 150.2 118 65.3
Ca_06327_v3 Cicer arietinum L. HOM05D005886 ORTHO05D007512 3.2e-34 148.7 131 60.3
CsaV3_6G004430 Cucumis sativus L. HOM05D005886 ORTHO05D007512 3.2e-34 148.7 134 58.2
Nitab4.5_0001781g0100 Nicotiana tabacum HOM05D005886 ORTHO05D007512 5.4e-34 147.9 117 61.5
Peaxi162Scf00120g00720 Petunia axillaris HOM05D005886 ORTHO05D007512 1.2e-33 146.7 113 61.9
Os01g0771100 Oryza sativa ssp. japonica HOM05D005886 ORTHO05D007512 1.2e-28 130.2 126 54.8
ATR1127G050 Amborella trichopoda HOM05D005886 ORTHO05D007512 1.7e-27 126.3 121 52.1
C03p87240 Brassica napus HOM05D005886 ORTHO05D007512 4.9e-27 124.8 72 81.9
BolC3t21025H Brassica oleracea HOM05D005886 ORTHO05D007512 4.9e-27 124.8 72 81.9
Zm00001eb151940 Zea mays HOM05D005886 ORTHO05D007512 2.4e-26 122.5 128 55.5
SHI21255 Sapria himalayana HOM05D005886 ORTHO05D007512 5.6e-23 111.3 116 51.7
Psat6g052440 Pisum sativum HOM05D005886 ORTHO05D007512 9.5e-23 110.5 91 60.4
CSS0009115 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 5.2e-21 104.8 76 65.8
Dinv04428 Davidia involucrata HOM05D005886 ORTHO05D007512 5.2e-21 104.8 88 60.2
BraA01t00524Z Brassica rapa HOM05D005886 ORTHO05D007512 2.6e-20 102.4 80 72.5
Oeu025604.1 Olea europaea HOM05D005886 ORTHO05D007512 3.4e-20 102.1 78 66.7
PSO339G0105 Papaver somniferum HOM05D005886 ORTHO05D007512 3.4e-20 102.1 136 42.6
Nn7g36032 Nelumbo nucifera HOM05D005886 ORTHO05D007512 1.3e-19 100.1 75 64.0
SEGI_05706 Sequoiadendron giganteum HOM05D005886 ORTHO05D007512 5.4e-18 94.7 122 42.6
unitig_46.g18648 Utricularia gibba HOM05D005886 ORTHO05D007512 2.3e-16 89.4 68 58.8
HanXRQChr07g0186821 Helianthus annuus HOM05D005886 ORTHO05D007512 2.1e-14 82.8 76 55.3
PSO384G2277 Papaver somniferum HOM05D005886 ORTHO05D007512 1.8e-13 79.7 129 34.9
AUR62011207 Chenopodium quinoa HOM05D005886 ORTHO05D007512 2.6e-12 75.9 53 66.0
A01p05520 Brassica napus HOM05D005886 ORTHO05D007512 4.2e-10 68.6 37 89.2
GSVIVG01034602001 Vitis vinifera HOM05D005886 ORTHO05D007512 1.3e-08 63.5 33 84.8
AUR62013280 Chenopodium quinoa HOM05D005886 ORTHO05D007512 1.1e-07 60.5 39 69.2
VMungo0251G2551 Vigna mungo HOM05D005886 ORTHO05D007512 6.2e-06 54.7 92 35.9


User provided reference genes

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