Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 2.4e-142 508.8 258 100.0
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 7.7e-133 477.2 258 94.2
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 1.7e-132 476.1 258 93.4
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 5.0e-132 474.6 258 93.0
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 6.5e-132 474.2 258 93.8
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 5.5e-115 417.9 258 84.9
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 3.0e-113 412.1 258 84.1
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 5.2e-113 411.4 259 81.9
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 2.9e-111 405.6 258 82.6
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 1.4e-110 403.3 254 80.7
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 5.4e-110 401.4 258 80.6
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 2.0e-109 399.4 259 81.1
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 6.4e-103 377.9 208 92.8
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 4.6e-93 345.1 208 87.5
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 6.0e-93 344.7 258 74.0
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 5.2e-89 331.6 208 81.7
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 5.6e-83 311.6 260 66.2
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 3.6e-82 308.9 260 64.6
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 8.1e-82 307.8 262 64.5
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 1.4e-81 307.0 262 64.9
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 1.4e-81 307.0 262 65.3
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 3.1e-81 305.8 260 65.4
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 6.8e-81 304.7 262 64.9
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 1.5e-80 303.5 260 65.4
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 2.0e-80 303.1 262 65.3
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 3.4e-80 302.4 262 65.6
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 4.4e-80 302.0 262 64.9
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 4.4e-80 302.0 262 63.7
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 4.4e-80 302.0 262 64.9
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 4.9e-79 298.5 262 63.4
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 4.9e-79 298.5 262 63.4
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 1.3e-76 290.4 250 65.2
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 5.1e-76 288.5 260 60.4
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 4.8e-74 282.0 250 63.2
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 1.1e-73 280.8 250 62.8
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 1.2e-72 277.3 195 72.3
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 4.4e-72 275.4 196 70.4
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 1.3e-71 273.9 222 63.5
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 2.9e-71 272.7 248 63.3
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 3.8e-71 272.3 240 57.1
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 3.8e-71 272.3 193 69.4
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 4.9e-71 271.9 178 72.5
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 6.4e-71 271.6 193 69.4
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 1.9e-70 270.0 201 65.7
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 1.9e-70 270.0 246 57.3
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 1.9e-70 270.0 193 68.9
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 7.1e-70 268.1 178 71.3
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 9.3e-70 267.7 193 68.4
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 9.3e-70 267.7 178 73.0
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 1.2e-69 267.3 178 71.9
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 1.6e-69 266.9 167 75.4
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 2.1e-69 266.5 250 56.0
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 6.0e-69 265.0 247 57.5
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 7.9e-69 264.6 238 59.7
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 7.9e-69 264.6 201 66.2
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 7.9e-69 264.6 188 69.1
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 1.7e-68 263.5 167 74.3
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 2.3e-68 263.1 178 70.8
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 3.0e-68 262.7 209 63.2
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 5.1e-68 261.9 191 67.0
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 6.6e-68 261.5 178 71.9
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 1.5e-67 260.4 204 64.2
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 1.9e-67 260.0 209 71.8
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 2.5e-67 259.6 170 73.5
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 3.3e-67 259.2 197 66.0
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 9.6e-67 257.7 210 65.2
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 9.6e-67 257.7 245 54.7
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 9.6e-67 257.7 167 73.1
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 1.3e-66 257.3 167 72.5
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 1.3e-66 257.3 168 73.2
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 2.8e-66 256.1 178 68.0
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 3.6e-66 255.8 191 67.0
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 4.8e-66 255.4 194 63.9
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 6.2e-66 255.0 178 67.4
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 8.1e-66 254.6 198 65.7
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 8.1e-66 254.6 192 64.1
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.1e-65 254.2 261 52.5
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 1.4e-65 253.8 198 65.2
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 1.4e-65 253.8 168 73.2
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 1.8e-65 253.4 265 54.7
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 1.8e-65 253.4 206 62.6
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 1.8e-65 253.4 188 67.6
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 3.1e-65 252.7 204 64.7
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 2.0e-64 250.0 193 66.3
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 2.6e-64 249.6 213 59.6
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 3.4e-64 249.2 191 66.5
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 4.5e-64 248.8 259 51.7
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.3e-63 247.3 259 51.4
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 1.3e-63 247.3 166 73.5
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 2.2e-63 246.5 185 63.8
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 2.9e-63 246.1 184 65.8
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 6.4e-63 245.0 225 64.9
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 1.1e-62 244.2 156 75.0
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 1.9e-62 243.4 166 69.3
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 1.9e-62 243.4 196 64.3
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 7.1e-62 241.5 179 64.2
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 7.1e-62 241.5 177 64.4
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 1.6e-61 240.4 178 64.0
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 3.9e-60 235.7 178 63.5
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 8.7e-60 234.6 192 59.9
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 2.5e-59 233.0 177 62.1
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 4.3e-59 232.3 199 62.3
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 7.4e-59 231.5 188 61.7
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 1.6e-58 230.3 197 57.9
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 2.8e-58 229.6 170 64.1
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 4.8e-58 228.8 197 59.9
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 6.2e-58 228.4 192 56.2
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 6.9e-57 224.9 218 54.6
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 1.2e-56 224.2 154 68.8
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 5.5e-54 215.3 217 56.7
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 9.3e-54 214.5 144 71.5
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 4.6e-53 212.2 192 55.2
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 2.3e-52 209.9 247 49.0
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 3.9e-52 209.1 147 70.7
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 1.4e-46 190.7 130 70.8
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 2.3e-44 183.3 129 70.5
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 2.3e-44 183.3 128 65.6
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 2.2e-42 176.8 139 59.7
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 6.3e-42 175.3 128 66.4
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 2.6e-40 169.9 155 51.0
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 1.7e-39 167.2 197 44.7
BcaC01g01754 Brassica carinata HOM05D005796 ORTHO05D007054 1.4e-36 157.5 114 71.9
C03p72260 Brassica napus HOM05D005796 ORTHO05D007054 1.4e-36 157.5 114 71.9
BolC3t19521H Brassica oleracea HOM05D005796 ORTHO05D007054 1.4e-36 157.5 114 71.9
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 1.5e-35 154.1 95 78.9
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 1.5e-32 144.1 141 52.5
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 1.7e-31 140.6 161 52.8
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 3.0e-28 129.8 82 74.4
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 1.2e-21 107.8 144 41.7
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 6.1e-21 105.5 78 62.8
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 3.3e-19 99.8 173 40.5
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 1.9e-14 84.0 102 46.1
MCO14G168 Micromonas commoda HOM05D005796 ORTHO05D007054 3.6e-13 79.7 152 29.6
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 4.7e-13 79.3 50 70.0
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 9.8e-11 71.6 91 42.9
Cre06.g295826 Chlamydomonas reinhardtii HOM05D005796 ORTHO05D007054 3.5e-08 63.2 129 27.1
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 1.1e-06 58.2 34 73.5


User provided reference genes

Program Settings