Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22890 Brassica carinata HOM05D008081 ORTHO05D010223 1.9e-138 495.7 238 100.0
A02p05940 Brassica napus HOM05D008081 ORTHO05D010223 1.3e-131 473.0 238 95.0
BraA02t05546Z Brassica rapa HOM05D008081 ORTHO05D010223 1.3e-131 473.0 238 95.0
BolC2t06998H Brassica oleracea HOM05D008081 ORTHO05D010223 1.8e-131 472.6 238 95.0
BNapus_Darmor_BZH_scaffold_38p01920 Brassica napus HOM05D008081 ORTHO05D010223 3.9e-131 471.5 238 94.5
Sp6g24410 Schrenkiella parvula HOM05D008081 ORTHO05D010223 8.4e-126 453.8 240 92.1
AL6G31500 Arabidopsis lyrata HOM05D008081 ORTHO05D010223 6.9e-120 434.1 241 88.8
Thhalv10013658m.g Eutrema salsugineum HOM05D008081 ORTHO05D010223 1.5e-119 433.0 240 87.9
AT5G19970 Arabidopsis thaliana HOM05D008081 ORTHO05D010223 3.8e-118 428.3 240 87.9
CARHR192880 Cardamine hirsuta HOM05D008081 ORTHO05D010223 4.9e-118 427.9 243 86.0
Thhalv10013905m.g Eutrema salsugineum HOM05D008081 ORTHO05D010223 8.4e-118 427.2 240 86.2
Carub.0006s1834 Capsella rubella HOM05D008081 ORTHO05D010223 8.2e-113 410.6 241 85.9
Aa31LG4G11630 Aethionema arabicum HOM05D008081 ORTHO05D010223 5.0e-94 348.2 244 71.7
BcaC03g13723 Brassica carinata HOM05D008081 ORTHO05D010223 4.5e-79 298.5 150 94.7
THA.LOC104815107 Tarenaya hassleriana HOM05D008081 ORTHO05D010223 1.0e-62 244.2 243 51.4
COL.COLO4_34977 Corchorus olitorius HOM05D008081 ORTHO05D010223 2.1e-52 209.9 242 45.0
Cpa.g.sc75.87 Carica papaya HOM05D008081 ORTHO05D010223 1.7e-49 200.3 246 44.7
Duzib168G0460 Durio zibethinus HOM05D008081 ORTHO05D010223 1.4e-48 197.2 241 46.5
Aqoxy7G01970 Aquilegia oxysepala HOM05D008081 ORTHO05D010223 9.2e-48 194.5 241 42.7
Hma1.2p1_0018F.1_g012950 Hydrangea macrophylla HOM05D008081 ORTHO05D010223 1.6e-47 193.7 244 42.6
Medtr2g055250 Medicago truncatula HOM05D008081 ORTHO05D010223 1.6e-47 193.7 240 45.0
Thecc.09G118700 Theobroma cacao HOM05D008081 ORTHO05D010223 2.1e-47 193.4 241 44.0
Psat1g025520 Pisum sativum HOM05D008081 ORTHO05D010223 4.6e-47 192.2 238 43.7
Glyma.06G213000 Glycine max HOM05D008081 ORTHO05D010223 1.3e-46 190.7 241 42.7
Glyma.04G150400 Glycine max HOM05D008081 ORTHO05D010223 1.7e-46 190.3 240 42.5
CSS0008637 Camellia sinensis var. sinensis HOM05D008081 ORTHO05D010223 5.1e-46 188.7 245 42.9
Ca_02616_v3 Cicer arietinum L. HOM05D008081 ORTHO05D010223 1.1e-45 187.6 241 43.2
Lj1g0011101 Lotus japonicus HOM05D008081 ORTHO05D010223 3.3e-45 186.0 248 43.1
Lalb_Chr01g0020971 Lupinus albus HOM05D008081 ORTHO05D010223 3.3e-45 186.0 242 42.6
Nitab4.5_0000282g0020 Nicotiana tabacum HOM05D008081 ORTHO05D010223 2.8e-44 183.0 240 40.4
Peaxi162Scf00292g00051 Petunia axillaris HOM05D008081 ORTHO05D010223 2.8e-44 183.0 240 40.4
CSS0001106 Camellia sinensis var. sinensis HOM05D008081 ORTHO05D010223 4.7e-44 182.2 245 42.0
CSS0031360 Camellia sinensis var. sinensis HOM05D008081 ORTHO05D010223 4.7e-44 182.2 245 42.4
ECA234G2703 Erigeron canadensis HOM05D008081 ORTHO05D010223 4.7e-44 182.2 248 42.7
Cc06_g09100 Coffea canephora HOM05D008081 ORTHO05D010223 2.3e-43 179.9 245 40.0
CANSAT56G1336 Cannabis sativa HOM05D008081 ORTHO05D010223 6.8e-43 178.3 243 39.1
Ciclev10008639m.g Citrus clementina HOM05D008081 ORTHO05D010223 6.8e-43 178.3 247 39.7
Phvul.009G199400 Phaseolus vulgaris HOM05D008081 ORTHO05D010223 3.4e-42 176.0 239 40.2
Gorai.010G066900 Gossypium raimondii HOM05D008081 ORTHO05D010223 4.4e-42 175.6 238 40.8
Gohir.D06G057200 Gossypium hirsutum HOM05D008081 ORTHO05D010223 5.8e-42 175.3 238 40.8
Lsat_1_v5_gn_5_98420 Lactuca sativa HOM05D008081 ORTHO05D010223 5.8e-42 175.3 247 43.7
Gohir.A06G059000 Gossypium hirsutum HOM05D008081 ORTHO05D010223 7.5e-42 174.9 238 40.8
PGSC0003DMG400015624 Solanum tuberosum HOM05D008081 ORTHO05D010223 2.9e-41 172.9 249 40.6
PSO765G0202 Papaver somniferum HOM05D008081 ORTHO05D010223 4.9e-41 172.2 236 39.4
Manes.14G127800 Manihot esculenta HOM05D008081 ORTHO05D010223 6.4e-41 171.8 242 39.3
TWI34G1060 Tripterygium wilfordii HOM05D008081 ORTHO05D010223 8.3e-41 171.4 237 40.9
Nn2g11886 Nelumbo nucifera HOM05D008081 ORTHO05D010223 1.1e-40 171.0 240 40.4
HanXRQChr10g0316871 Helianthus annuus HOM05D008081 ORTHO05D010223 2.4e-40 169.9 248 41.1
Solyc08g041700.1 Solanum lycopersicum HOM05D008081 ORTHO05D010223 2.4e-40 169.9 251 40.2
Sopen08g011800 Solanum pennellii HOM05D008081 ORTHO05D010223 3.2e-40 169.5 251 40.2
VMungo1309G1591 Vigna mungo HOM05D008081 ORTHO05D010223 4.1e-40 169.1 243 38.3
TAR383G0366 Trochodendron aralioides HOM05D008081 ORTHO05D010223 7.1e-40 168.3 236 41.1
Eucgr.C01103 Eucalyptus grandis HOM05D008081 ORTHO05D010223 9.2e-40 167.9 242 38.0
Eucgr.L02382 Eucalyptus grandis HOM05D008081 ORTHO05D010223 9.2e-40 167.9 242 38.0
MBI04_g33811_MAGBIO Magnolia biondii HOM05D008081 ORTHO05D010223 1.2e-39 167.5 238 37.8
Atru.chr7.1264 Acer truncatum HOM05D008081 ORTHO05D010223 1.6e-39 167.2 252 37.7
PGR142G1327 Punica granatum HOM05D008081 ORTHO05D010223 2.7e-39 166.4 240 40.8
PSO349G0241 Papaver somniferum HOM05D008081 ORTHO05D010223 3.5e-39 166.0 238 39.1
Sabra18G0062600 Salix brachista HOM05D008081 ORTHO05D010223 4.6e-39 165.6 245 38.0
QL02p086958 Quercus lobata HOM05D008081 ORTHO05D010223 3.9e-38 162.5 242 38.4
DCAR_009223 Daucus carota HOM05D008081 ORTHO05D010223 3.3e-37 159.5 241 39.0
TPR.G30892 Trifolium pratense HOM05D008081 ORTHO05D010223 1.2e-36 157.5 203 39.4
Potri.018G071900 Populus trichocarpa HOM05D008081 ORTHO05D010223 1.4e-35 154.1 251 36.7
GSVIVG01015465001 Vitis vinifera HOM05D008081 ORTHO05D010223 3.1e-35 152.9 241 38.6
Nitab4.5_0003085g0020 Nicotiana tabacum HOM05D008081 ORTHO05D010223 1.7e-30 137.1 203 37.4
Oeu032197.1 Olea europaea HOM05D008081 ORTHO05D010223 5.1e-30 135.6 237 34.2
ATR0083G076 Amborella trichopoda HOM05D008081 ORTHO05D010223 2.8e-28 129.8 225 33.8
Zm00001eb158500 Zea mays HOM05D008081 ORTHO05D010223 6.2e-28 128.6 252 32.1
Os01g0647000 Oryza sativa ssp. japonica HOM05D008081 ORTHO05D010223 1.1e-27 127.9 242 34.3
CSS0020794 Camellia sinensis var. sinensis HOM05D008081 ORTHO05D010223 1.2e-18 97.8 166 36.1
Actinidia09389 Actinidia chinensis HOM05D008081 ORTHO05D010223 1.2e-15 87.8 169 36.7
Dinv36582 Davidia involucrata HOM05D008081 ORTHO05D010223 4.6e-07 59.3 159 28.3


User provided reference genes

Program Settings