Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 3.7e-238 827.8 407 100.0
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 1.4e-221 772.7 407 93.6
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 3.4e-220 768.1 407 93.1
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 3.4e-220 768.1 407 93.1
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 5.2e-216 754.2 407 91.9
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 1.1e-210 736.5 408 89.0
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 2.0e-207 725.7 408 89.0
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 3.7e-206 721.5 407 86.7
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 6.5e-203 710.7 407 85.7
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 3.2e-202 708.4 401 86.5
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 8.0e-201 703.7 407 84.8
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 5.7e-199 697.6 393 87.8
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 7.5e-199 697.2 407 83.8
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 8.3e-198 693.7 390 87.4
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 2.0e-196 689.1 409 83.4
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 2.1e-193 679.1 385 88.6
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 2.1e-193 679.1 385 88.6
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 5.6e-186 654.4 407 79.6
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 7.3e-178 627.5 392 78.8
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 6.6e-171 604.4 405 74.8
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 8.1e-169 597.4 409 73.1
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 1.1e-168 597.0 405 72.8
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.0e-168 595.1 398 73.1
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 4.0e-168 595.1 406 74.1
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 5.2e-168 594.7 406 72.4
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 8.9e-168 594.0 398 72.9
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 1.5e-167 593.2 383 74.2
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 2.6e-167 592.4 404 73.5
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 5.8e-167 591.3 411 72.0
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 9.9e-167 590.5 406 73.9
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 1.3e-166 590.1 404 72.0
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.9e-166 589.0 411 72.0
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.9e-166 588.2 398 72.4
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.9e-166 588.2 389 74.6
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 6.4e-166 587.8 398 71.9
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 1.4e-165 586.6 417 70.0
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 1.4e-165 586.6 405 72.3
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 2.7e-164 582.4 405 72.3
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 7.8e-164 580.9 404 72.5
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 1.0e-163 580.5 404 70.3
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 1.3e-163 580.1 384 74.2
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 3.9e-163 578.6 404 70.5
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 3.9e-163 578.6 407 69.5
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.9e-162 576.2 403 70.7
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 3.3e-162 575.5 405 70.1
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 4.3e-162 575.1 404 70.8
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 7.3e-162 574.3 406 70.4
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 7.3e-162 574.3 406 69.5
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 1.6e-161 573.2 403 70.2
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 4.7e-161 571.6 403 70.2
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.1e-160 570.5 397 71.3
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 4.0e-160 568.5 413 70.9
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 5.2e-160 568.2 394 70.3
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 5.2e-160 568.2 404 68.1
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 6.8e-160 567.8 389 71.0
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.5e-159 566.6 404 68.3
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 5.8e-159 564.7 385 70.9
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 5.8e-159 564.7 389 73.5
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 5.8e-159 564.7 384 70.8
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 1.3e-158 563.5 400 69.5
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 2.9e-158 562.4 401 70.6
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 6.4e-158 561.2 392 71.4
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 8.4e-158 560.8 407 69.3
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.4e-157 560.1 402 69.7
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 1.9e-157 559.7 398 68.8
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 1.9e-157 559.7 404 69.8
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 3.2e-157 558.9 398 69.8
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 4.2e-157 558.5 414 67.9
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 5.4e-157 558.1 406 67.7
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 7.1e-157 557.8 403 70.0
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 9.2e-157 557.4 389 69.7
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 2.1e-156 556.2 407 68.6
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 2.1e-156 556.2 406 67.7
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 3.5e-156 555.4 405 68.4
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 2.3e-155 552.7 389 69.2
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 3.0e-155 552.4 394 69.0
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 3.0e-155 552.4 383 69.2
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 3.9e-155 552.0 389 69.7
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 6.6e-155 551.2 389 69.2
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 8.7e-155 550.8 405 67.4
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 1.1e-154 550.4 404 68.6
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 1.5e-154 550.1 382 70.9
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 7.3e-154 547.7 406 68.2
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 9.6e-154 547.4 389 68.9
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 2.1e-153 546.2 407 68.1
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 4.7e-153 545.0 400 67.5
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 1.8e-152 543.1 409 66.7
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 4.0e-152 542.0 405 66.9
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 2.6e-151 539.3 389 68.1
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 4.4e-151 538.5 405 66.2
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 5.8e-151 538.1 411 66.4
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 1.7e-150 536.6 411 67.2
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 3.8e-150 535.4 385 69.1
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 9.3e-149 530.8 359 71.3
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 7.8e-148 527.7 410 66.8
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 1.0e-147 527.3 386 66.1
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.7e-147 526.6 411 65.2
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.3e-147 526.2 386 68.1
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 3.9e-147 525.4 392 67.9
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 1.5e-146 523.5 456 62.5
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 7.3e-146 521.2 388 65.7
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 8.1e-145 517.7 361 71.2
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 1.8e-144 516.5 403 64.0
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 6.9e-144 514.6 398 65.1
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 1.3e-142 510.4 406 63.3
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 2.9e-142 509.2 395 64.3
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 1.4e-141 506.9 415 62.2
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 3.2e-141 505.8 384 64.1
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 1.5e-138 496.9 379 64.1
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 1.9e-138 496.5 380 64.2
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 9.6e-138 494.2 380 63.4
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 1.3e-137 493.8 381 64.0
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 2.1e-137 493.0 389 63.2
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.4e-136 490.3 382 63.4
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 3.1e-136 489.2 382 63.4
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 4.0e-136 488.8 394 61.4
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 9.0e-136 487.6 383 64.2
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 2.0e-135 486.5 311 76.5
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 3.4e-135 485.7 393 62.1
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 4.5e-135 485.3 383 63.7
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 7.6e-135 484.6 397 63.2
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 2.5e-133 479.6 383 64.0
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.0e-131 472.6 405 60.5
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 1.1e-130 470.7 331 67.7
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 1.9e-130 469.9 394 60.9
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 5.8e-127 458.4 307 72.3
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.9e-126 456.1 385 60.3
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 6.9e-120 434.9 257 80.9
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.4e-117 427.2 389 56.0
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.0e-107 392.9 250 74.8
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 5.1e-107 392.1 226 80.1
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.7e-102 377.1 279 69.2
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 9.4e-101 371.3 278 67.6
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 3.6e-100 369.4 411 49.6
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 3.7e-97 359.4 204 86.8
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 2.5e-93 346.7 277 63.2
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 7.5e-90 335.1 388 46.9
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 9.7e-90 334.7 274 58.4
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 6.3e-89 332.0 250 64.0
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 3.1e-88 329.7 234 67.9
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 7.0e-88 328.6 394 45.9
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.2e-76 291.2 172 81.4
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.8e-72 277.3 197 71.6
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 5.0e-62 242.7 169 69.8
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.5e-61 241.1 281 45.6
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 2.3e-46 190.7 163 60.1
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.4e-43 181.4 338 34.9
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.6e-42 177.2 146 59.6
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.3e-38 164.1 165 53.3
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 2.3e-38 164.1 118 69.5
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.3e-36 158.3 161 52.8
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 4.0e-35 153.3 82 85.4
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 7.6e-34 149.1 181 47.5
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.7e-30 137.9 305 33.1
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.5e-29 134.0 293 32.1
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 3.3e-29 133.7 256 36.7
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 1.6e-28 131.3 252 36.5
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 5.8e-26 122.9 76 73.7
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 6.4e-25 119.4 367 30.0
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.6e-23 114.8 143 46.2
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 7.9e-23 112.5 68 75.0
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.3e-22 110.9 68 73.5
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.9e-22 110.2 68 73.5
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 2.1e-20 104.4 186 37.1
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 2.6e-18 97.4 148 36.5
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 1.4e-16 91.7 146 38.4
BolC2t07012H Brassica oleracea HOM05D004174 ORTHO05D004624 6.0e-15 86.3 49 87.8
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 6.7e-14 82.8 170 33.5
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 1.8e-11 74.7 114 38.6
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 3.4e-10 70.5 67 46.3
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.0e-09 68.9 38 78.9
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 5.5e-08 63.2 119 38.7
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 2.3e-06 57.8 181 29.8
TAR623G0918 Trochodendron aralioides HOM05D005723 ORTHO05D005968 3.0e-06 57.4 213 26.3
A05p02710 Brassica napus HOM05D005723 ORTHO05D005968 6.7e-06 56.2 181 29.3


User provided reference genes

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