Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22870 Brassica carinata HOM05D006513 ORTHO05D008150 2.6e-118 428.7 212 100.0
BolC2t07016H Brassica oleracea HOM05D006513 ORTHO05D008150 2.0e-102 375.9 190 96.8
BcaC03g13734 Brassica carinata HOM05D006513 ORTHO05D008150 4.4e-102 374.8 190 96.3
A02p06050 Brassica napus HOM05D006513 ORTHO05D008150 4.4e-102 374.8 190 96.8
BraA02t05556Z Brassica rapa HOM05D006513 ORTHO05D008150 1.3e-101 373.2 189 96.8
BNapus_Darmor_BZH_scaffold_38p01790 Brassica napus HOM05D006513 ORTHO05D008150 1.7e-98 362.8 196 92.9
Sp6g24280 Schrenkiella parvula HOM05D006513 ORTHO05D008150 1.1e-95 353.6 189 91.5
CARHR192710 Cardamine hirsuta HOM05D006513 ORTHO05D008150 1.8e-95 352.8 189 91.5
AL6G31670 Arabidopsis lyrata HOM05D006513 ORTHO05D008150 2.0e-94 349.4 189 92.1
AT5G20120 Arabidopsis thaliana HOM05D006513 ORTHO05D008150 9.9e-94 347.1 189 92.1
Carub.0006s1850 Capsella rubella HOM05D006513 ORTHO05D008150 3.8e-93 345.1 189 90.5
Thhalv10014769m.g Eutrema salsugineum HOM05D006513 ORTHO05D008150 4.9e-93 344.7 189 89.9
Aa31LG1G14240 Aethionema arabicum HOM05D006513 ORTHO05D008150 7.3e-89 330.9 189 83.6
THA.LOC104799645 Tarenaya hassleriana HOM05D006513 ORTHO05D008150 1.2e-83 313.5 189 82.0
Manes.06G049600 Manihot esculenta HOM05D006513 ORTHO05D008150 4.2e-76 288.5 189 72.0
Thecc.09G123900 Theobroma cacao HOM05D006513 ORTHO05D008150 7.1e-76 287.7 189 74.6
Manes.14G131100 Manihot esculenta HOM05D006513 ORTHO05D008150 1.2e-75 287.0 189 71.4
THA.LOC104811035 Tarenaya hassleriana HOM05D006513 ORTHO05D008150 2.7e-75 285.8 177 80.2
Gohir.A08G239200 Gossypium hirsutum HOM05D006513 ORTHO05D008150 1.3e-74 283.5 189 74.6
Potri.018G066700 Populus trichocarpa HOM05D006513 ORTHO05D008150 1.3e-74 283.5 189 70.4
Sabra18G0060100 Salix brachista HOM05D006513 ORTHO05D008150 3.9e-74 282.0 189 70.4
Gorai.001G041200 Gossypium raimondii HOM05D006513 ORTHO05D008150 1.1e-73 280.4 189 72.5
Gohir.A07G035100 Gossypium hirsutum HOM05D006513 ORTHO05D008150 1.9e-73 279.6 189 72.5
Gohir.D07G039100 Gossypium hirsutum HOM05D006513 ORTHO05D008150 2.5e-73 279.3 189 72.5
PGR102G1904 Punica granatum HOM05D006513 ORTHO05D008150 2.5e-73 279.3 189 72.5
Ciclev10009612m.g Citrus clementina HOM05D006513 ORTHO05D008150 1.6e-72 276.6 189 70.9
Glyma.13G168100 Glycine max HOM05D006513 ORTHO05D008150 1.6e-72 276.6 195 71.8
Lj4g0014130 Lotus japonicus HOM05D006513 ORTHO05D008150 2.8e-72 275.8 194 68.6
Duzib187G1241 Durio zibethinus HOM05D006513 ORTHO05D008150 3.7e-72 275.4 189 70.4
TWI34G1228 Tripterygium wilfordii HOM05D006513 ORTHO05D008150 4.8e-72 275.0 189 70.9
Eucgr.C04187 Eucalyptus grandis HOM05D006513 ORTHO05D008150 1.1e-71 273.9 190 70.0
Glyma.17G115800 Glycine max HOM05D006513 ORTHO05D008150 1.4e-71 273.5 195 70.3
Sed0011750 Sechium edule HOM05D006513 ORTHO05D008150 2.4e-71 272.7 189 69.8
TPR.G10698 Trifolium pratense HOM05D006513 ORTHO05D008150 4.0e-71 271.9 194 68.0
CiPaw.03G242700 Carya illinoinensis HOM05D006513 ORTHO05D008150 6.9e-71 271.2 189 67.7
Phvul.003G163500 Phaseolus vulgaris HOM05D006513 ORTHO05D008150 9.0e-71 270.8 195 68.7
Haze_25608 Corylus avellana HOM05D006513 ORTHO05D008150 2.6e-70 269.2 187 69.5
Gorai.004G277700 Gossypium raimondii HOM05D006513 ORTHO05D008150 3.4e-70 268.9 223 63.2
Duzib150G1190 Durio zibethinus HOM05D006513 ORTHO05D008150 7.6e-70 267.7 185 69.7
TWI63G1281 Tripterygium wilfordii HOM05D006513 ORTHO05D008150 1.7e-69 266.5 193 68.9
Hma1.2p1_0665F.1_g199090 Hydrangea macrophylla HOM05D006513 ORTHO05D008150 6.5e-69 264.6 189 67.2
Sed0002363 Sechium edule HOM05D006513 ORTHO05D008150 1.4e-68 263.5 189 68.3
GSVIVG01015511001 Vitis vinifera HOM05D006513 ORTHO05D008150 1.4e-68 263.5 189 68.8
Actinidia26398 Actinidia chinensis HOM05D006513 ORTHO05D008150 3.2e-68 262.3 189 67.2
arahy.Tifrunner.gnm1.ann1.7JIW3E Arachis hypogaea HOM05D006513 ORTHO05D008150 3.2e-68 262.3 195 65.6
PSO455G0031 Papaver somniferum HOM05D006513 ORTHO05D008150 2.1e-67 259.6 190 66.8
Psat4g039440 Pisum sativum HOM05D006513 ORTHO05D008150 2.7e-67 259.2 197 65.5
Cc06_g08720 Coffea canephora HOM05D006513 ORTHO05D008150 6.0e-67 258.1 189 66.1
PSO170G2269 Papaver somniferum HOM05D006513 ORTHO05D008150 6.7e-66 254.6 190 65.3
Prupe.7G240600 Prunus persica HOM05D006513 ORTHO05D008150 8.7e-66 254.2 188 67.6
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 3.7e-64 248.8 188 63.8
MD02G1034700 Malus domestica HOM05D006513 ORTHO05D008150 3.1e-63 245.7 188 66.5
Lsat_1_v5_gn_7_45681 Lactuca sativa HOM05D006513 ORTHO05D008150 5.3e-63 245.0 186 63.4
QL02p087926 Quercus lobata HOM05D006513 ORTHO05D008150 6.9e-63 244.6 251 51.8
Lalb_Chr13g0301941 Lupinus albus HOM05D006513 ORTHO05D008150 2.0e-62 243.0 200 64.0
CANSAT11G2038 Cannabis sativa HOM05D006513 ORTHO05D008150 2.6e-62 242.7 189 63.0
Nitab4.5_0002556g0080 Nicotiana tabacum HOM05D006513 ORTHO05D008150 2.6e-62 242.7 191 61.3
Medtr4g114105 Medicago truncatula HOM05D006513 ORTHO05D008150 3.4e-62 242.3 183 65.6
HanXRQChr09g0242331 Helianthus annuus HOM05D006513 ORTHO05D008150 4.5e-62 241.9 191 62.8
vmacro06122 Vaccinium macrocarpon HOM05D006513 ORTHO05D008150 4.5e-62 241.9 190 65.8
vmacro06182 Vaccinium macrocarpon HOM05D006513 ORTHO05D008150 4.5e-62 241.9 190 65.8
Nitab4.5_0007523g0020 Nicotiana tabacum HOM05D006513 ORTHO05D008150 5.8e-62 241.5 191 60.7
CSS0037158 Camellia sinensis var. sinensis HOM05D006513 ORTHO05D008150 5.0e-61 238.4 192 64.1
ECA240G2511 Erigeron canadensis HOM05D006513 ORTHO05D008150 6.5e-61 238.0 190 61.6
RcHm_v2.0_Chr2g0089051 Rosa chinensis HOM05D006513 ORTHO05D008150 6.5e-61 238.0 188 64.4
Ah.09g225970 Amaranthus hybridus HOM05D006513 ORTHO05D008150 8.4e-61 237.7 192 59.9
Lalb_Chr12g0197841 Lupinus albus HOM05D006513 ORTHO05D008150 1.2e-59 233.8 200 63.5
Nn2g12003 Nelumbo nucifera HOM05D006513 ORTHO05D008150 1.2e-59 233.8 189 64.0
EL10Ac8g18628 Beta vulgaris HOM05D006513 ORTHO05D008150 4.6e-59 231.9 192 59.9
Hma1.2p1_3730F.1_g337400 Hydrangea macrophylla HOM05D006513 ORTHO05D008150 6.1e-59 231.5 191 59.7
Sopen12g002610 Solanum pennellii HOM05D006513 ORTHO05D008150 6.1e-59 231.5 189 59.8
Actinidia07430 Actinidia chinensis HOM05D006513 ORTHO05D008150 7.9e-59 231.1 191 63.9
Solyc12g006660.2 Solanum lycopersicum HOM05D006513 ORTHO05D008150 7.9e-59 231.1 189 59.3
Sc08g0006720 Simmondsia chinensis HOM05D006513 ORTHO05D008150 1.0e-58 230.7 190 59.5
FvH4_1g03550 Fragaria vesca HOM05D006513 ORTHO05D008150 1.3e-58 230.3 188 62.8
FAN19G1517 Fragaria x ananassa HOM05D006513 ORTHO05D008150 1.3e-58 230.3 188 62.8
Rhsim03G0247400 Rhododendron simsii HOM05D006513 ORTHO05D008150 1.8e-58 229.9 192 63.0
Peaxi162Scf00984g00021 Petunia axillaris HOM05D006513 ORTHO05D008150 3.0e-58 229.2 190 57.9
FAN28G2022 Fragaria x ananassa HOM05D006513 ORTHO05D008150 3.9e-58 228.8 188 62.2
FAN26G1752 Fragaria x ananassa HOM05D006513 ORTHO05D008150 5.1e-58 228.4 188 62.2
CAN.G377.11 Capsicum annuum HOM05D006513 ORTHO05D008150 6.7e-58 228.0 189 58.7
CsaV3_1G029880 Cucumis sativus L. HOM05D006513 ORTHO05D008150 1.9e-57 226.5 150 70.7
PGSC0003DMG401020668 Solanum tuberosum HOM05D006513 ORTHO05D008150 5.7e-57 224.9 189 57.7
Nn8g39411 Nelumbo nucifera HOM05D006513 ORTHO05D008150 2.2e-56 223.0 189 60.3
MD15G1175500 Malus domestica HOM05D006513 ORTHO05D008150 4.8e-56 221.9 188 61.7
AUR62033489 Chenopodium quinoa HOM05D006513 ORTHO05D008150 1.1e-55 220.7 191 57.6
Oeu021588.1 Olea europaea HOM05D006513 ORTHO05D008150 1.4e-55 220.3 159 66.0
Aqoxy7G02130 Aquilegia oxysepala HOM05D006513 ORTHO05D008150 4.1e-55 218.8 190 61.1
MELO3C010361.2 Cucumis melo HOM05D006513 ORTHO05D008150 2.6e-54 216.1 142 71.8
TAR625G1184 Trochodendron aralioides HOM05D006513 ORTHO05D008150 5.9e-54 214.9 184 61.4
Duzib168G2120 Durio zibethinus HOM05D006513 ORTHO05D008150 7.7e-54 214.5 154 67.5
HanXRQChr03g0062541 Helianthus annuus HOM05D006513 ORTHO05D008150 2.9e-53 212.6 190 55.8
arahy.Tifrunner.gnm1.ann1.PME717 Arachis hypogaea HOM05D006513 ORTHO05D008150 6.5e-53 211.5 190 60.0
Ca_21690_v3 Cicer arietinum L. HOM05D006513 ORTHO05D008150 7.9e-51 204.5 156 63.5
MBI01_g37808_MAGBIO Magnolia biondii HOM05D006513 ORTHO05D008150 4.3e-49 198.7 190 57.4
AUR62011112 Chenopodium quinoa HOM05D000667 ORTHO05D002614 2.8e-48 196.1 169 58.6
TAR626G1980 Trochodendron aralioides HOM05D006513 ORTHO05D008150 4.8e-48 195.3 141 67.4
ClCG06G010970 Citrullus lanatus HOM05D006513 ORTHO05D008150 1.0e-45 187.6 161 58.4
Lj7A631T29 Lonicera japonica HOM05D006513 ORTHO05D008150 6.5e-45 184.9 145 64.1
VMungo1215G0117 Vigna mungo HOM05D006513 ORTHO05D008150 1.4e-42 177.2 190 52.1
HPP92_002794 Vanilla planifolia HOM05D006513 ORTHO05D008150 2.0e-38 163.3 190 50.0
Hund26496 Selenicereus undatus HOM05D006513 ORTHO05D008150 6.5e-37 158.3 134 56.7
Gohir.D08G259900 Gossypium hirsutum HOM05D006513 ORTHO05D008150 1.0e-34 151.0 103 72.8
ATR1156G011 Amborella trichopoda HOM05D006513 ORTHO05D008150 8.8e-34 147.9 185 45.9
SEGI_29438 Sequoiadendron giganteum HOM05D006513 ORTHO05D008150 5.7e-33 145.2 189 42.9
Duzib150G1040 Durio zibethinus HOM05D006513 ORTHO05D008150 2.8e-32 142.9 96 70.8
COL.COLO4_05780 Corchorus olitorius HOM05D006513 ORTHO05D008150 1.7e-29 133.7 87 70.1
Pp3c5_25700 Physcomitrium patens HOM05D006513 ORTHO05D008150 3.6e-27 125.9 161 43.5
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 4.7e-27 125.6 89 66.3
Mapoly0015s0101 Marchantia polymorpha HOM05D006513 ORTHO05D008150 8.8e-26 121.3 161 38.5
Nitab4.5_0017656g0020 Nicotiana tabacum HOM05D006513 ORTHO05D008150 4.5e-22 109.0 96 54.2
AagrBONN_evm.TU.Sc2ySwM_340.153 Anthoceros agrestis HOM05D006513 ORTHO05D008150 4.7e-19 99.0 166 33.1
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.4e-18 97.4 87 60.9
TAR090G0005 Trochodendron aralioides HOM05D006513 ORTHO05D008150 2.3e-18 96.7 66 74.2
CBR_g6525 Chara braunii HOM05D006513 ORTHO05D008150 5.2e-18 95.5 121 38.0
Rhsim02G0222800 Rhododendron simsii HOM05D006513 ORTHO05D008150 1.3e-16 90.9 75 60.0
HPP92_027747 Vanilla planifolia HOM05D006513 ORTHO05D008150 1.0e-13 81.3 100 47.0
Pp3c25_13070 Physcomitrium patens HOM05D006513 ORTHO05D008150 1.8e-10 70.5 95 33.7
Cpa.g.sc75.50 Carica papaya HOM05D006513 ORTHO05D008150 5.7e-09 65.5 47 70.2
RcHm_v2.0_Chr7g0212941 Rosa chinensis HOM05D006513 ORTHO05D008150 4.9e-08 62.4 45 68.9
AUR62043674 Chenopodium quinoa HOM05D006513 ORTHO05D003876 2.4e-07 60.1 51 54.9


User provided reference genes

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