Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22858 Brassica carinata HOM05D015966 ORTHO05D092322 2.7e-89 332.0 175 100.0
BcaB08g36357 Brassica carinata HOM05D015966 ORTHO05D000065 6.1e-57 224.6 167 76.6
BcaC08g44329 Brassica carinata HOM05D031856 ORTHO05D000065 5.6e-26 121.7 87 79.3
BcaC09g48652 Brassica carinata HOM05D001728 ORTHO05D004174 1.2e-25 120.6 117 66.7
BolC1t04696H Brassica oleracea HOM05D001728 ORTHO05D004174 1.2e-25 120.6 117 66.7
C01p47260 Brassica napus HOM05D001728 ORTHO05D004174 3.6e-25 119.0 117 65.8
Sp3g15220 Schrenkiella parvula HOM05D001728 ORTHO05D004174 6.2e-25 118.2 137 59.9
A01p37320 Brassica napus HOM05D001728 ORTHO05D004174 3.1e-24 115.9 117 65.0
BraA01t03790Z Brassica rapa HOM05D001728 ORTHO05D004174 3.1e-24 115.9 117 65.0
AT3G17000 Arabidopsis thaliana HOM05D001728 ORTHO05D004174 5.2e-24 115.2 107 63.6
AL3G29980 Arabidopsis lyrata HOM05D001728 ORTHO05D004174 8.9e-24 114.4 116 61.2
Thhalv10021196m.g Eutrema salsugineum HOM05D001728 ORTHO05D004174 8.9e-24 114.4 116 64.7
CARHR092250 Cardamine hirsuta HOM05D001728 ORTHO05D004174 7.5e-23 111.3 132 59.1
Carub.0003s1675 Capsella rubella HOM05D001728 ORTHO05D004174 2.1e-20 103.2 118 58.5
C09p19910 Brassica napus HOM05D015966 ORTHO05D019956 2.3e-19 99.8 71 76.1
BcaC04g22383 Brassica carinata HOM05D015966 ORTHO05D019956 4.7e-17 92.0 64 78.1
C06p17560 Brassica napus HOM05D015966 ORTHO05D019956 4.7e-17 92.0 64 78.1
BolC6t36950H Brassica oleracea HOM05D015966 ORTHO05D019956 4.7e-17 92.0 64 78.1
BolC9t54896H Brassica oleracea HOM05D015966 ORTHO05D019956 4.7e-17 92.0 64 78.1
C03p66290 Brassica napus HOM05D015966 ORTHO05D019956 5.8e-15 85.1 64 73.4
BolC3t18901H Brassica oleracea HOM05D015966 ORTHO05D019956 5.8e-15 85.1 64 73.4
Aa31LG8G4040 Aethionema arabicum HOM05D001728 ORTHO05D004174 1.7e-11 73.6 120 43.3
BolC5t33689H Brassica oleracea HOM05D056811 ORTHO05D042642 3.0e-11 72.8 75 64.0
C05p49430 Brassica napus HOM05D056811 ORTHO05D042642 1.9e-10 70.1 75 62.7
Thhalv10025677m.g Eutrema salsugineum HOM05D001728 ORTHO05D004174 1.4e-08 63.9 116 45.7
Aa31LG10G5870 Aethionema arabicum HOM05D001728 ORTHO05D004174 4.0e-08 62.4 89 51.7
RcHm_v2.0_Chr4g0424811 Rosa chinensis HOM05D001728 ORTHO05D004174 2.0e-07 60.1 93 46.2
CARHR222630 Cardamine hirsuta HOM05D001728 ORTHO05D004174 2.6e-07 59.7 110 39.1
CSS0014848 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004174 4.4e-07 58.9 92 44.6
THA.LOC104820301 Tarenaya hassleriana HOM05D001728 ORTHO05D004174 4.4e-07 58.9 83 49.4
AL7G38800 Arabidopsis lyrata HOM05D001728 ORTHO05D004174 5.8e-07 58.5 115 43.5
CSS0020178 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004174 5.8e-07 58.5 110 42.7
ClCG05G006510 Citrullus lanatus HOM05D001728 ORTHO05D004174 5.8e-07 58.5 110 38.2
Potri.010G143900 Populus trichocarpa HOM05D001728 ORTHO05D004174 5.8e-07 58.5 80 51.2
Rhsim02G0004600 Rhododendron simsii HOM05D001728 ORTHO05D004174 7.6e-07 58.2 125 36.0
Sabra08G0080000 Salix brachista HOM05D001728 ORTHO05D004174 7.6e-07 58.2 80 53.8
Actinidia13363 Actinidia chinensis HOM05D001728 ORTHO05D004174 9.9e-07 57.8 81 46.9
BcaNung00213 Brassica carinata HOM05D001728 ORTHO05D004174 9.9e-07 57.8 91 51.6
CSS0047464 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004174 9.9e-07 57.8 81 45.7
Manes.03G203400 Manihot esculenta HOM05D001728 ORTHO05D004174 1.3e-06 57.4 78 47.4
Sabra10G0111100 Salix brachista HOM05D001728 ORTHO05D004174 1.3e-06 57.4 112 41.1
Carub.0007s2527 Capsella rubella HOM05D001728 ORTHO05D004174 2.9e-06 56.2 112 42.0
C04p50380 Brassica napus HOM05D016317 ORTHO05D022000 4.9e-06 55.5 55 50.9
BolC4t26636H Brassica oleracea HOM05D016317 ORTHO05D022000 4.9e-06 55.5 55 50.9
MELO3C006710.2 Cucumis melo HOM05D001728 ORTHO05D004174 4.9e-06 55.5 108 38.0
HanXRQChr15g0466661 Helianthus annuus HOM05D001728 ORTHO05D004174 4.9e-06 55.5 114 38.6
Sp7g14760 Schrenkiella parvula HOM05D001728 ORTHO05D004174 4.9e-06 55.5 112 42.0
FvH4_4g19560 Fragaria vesca HOM05D001728 ORTHO05D004174 6.4e-06 55.1 112 42.0
FAN12G2115 Fragaria x ananassa HOM05D001728 ORTHO05D004174 6.4e-06 55.1 112 42.0


User provided reference genes

Program Settings