Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22841 Brassica carinata HOM05D000116 ORTHO05D092815 7.2e-65 250.4 121 100.0
BcaB05g22839 Brassica carinata HOM05D000116 ORTHO05D000703 7.9e-64 246.9 119 100.0
BcaC03g13768 Brassica carinata HOM05D000116 ORTHO05D000703 2.4e-12 75.9 38 89.5
BolC2t07044H Brassica oleracea HOM05D000116 ORTHO05D000703 2.4e-12 75.9 38 89.5
A02p06270 Brassica napus HOM05D000116 ORTHO05D000703 1.2e-11 73.6 38 86.8
BNapus_Darmor_BZH_scaffold_38p01570 Brassica napus HOM05D000116 ORTHO05D000703 1.2e-11 73.6 38 86.8
BraA02t05575Z Brassica rapa HOM05D000116 ORTHO05D000703 1.2e-11 73.6 38 86.8
Thhalv10014993m.g Eutrema salsugineum HOM05D000116 ORTHO05D000703 1.0e-10 70.5 38 81.6
BcaB05g22845 Brassica carinata HOM05D000116 ORTHO05D000703 1.3e-10 70.1 38 81.6
CARHR192310 Cardamine hirsuta HOM05D000116 ORTHO05D000703 6.6e-10 67.8 38 76.3
Dinv25481 Davidia involucrata HOM05D000116 ORTHO05D000703 8.6e-10 67.4 38 73.7
Actinidia04530 Actinidia chinensis HOM05D000116 ORTHO05D000703 2.5e-09 65.9 39 66.7
AL6G32030 Arabidopsis lyrata HOM05D000116 ORTHO05D000703 2.5e-09 65.9 38 73.7
vmacro13100 Vaccinium macrocarpon HOM05D000116 ORTHO05D000703 2.5e-09 65.9 38 71.1
Sp6g23960 Schrenkiella parvula HOM05D000116 ORTHO05D000703 4.3e-09 65.1 38 78.9
Thecc.09G191800 Theobroma cacao HOM05D000116 ORTHO05D000703 4.3e-09 65.1 38 73.7
Ah.09g232610 Amaranthus hybridus HOM05D000413 ORTHO05D000292 5.6e-09 64.7 39 66.7
AT5G20500 Arabidopsis thaliana HOM05D000116 ORTHO05D000703 5.6e-09 64.7 38 71.1
BcaB08g36504 Brassica carinata HOM05D000116 ORTHO05D000703 7.3e-09 64.3 38 76.3
A10p19510 Brassica napus HOM05D000116 ORTHO05D000703 7.3e-09 64.3 38 76.3
BolC9t58437H Brassica oleracea HOM05D000116 ORTHO05D000703 7.3e-09 64.3 38 76.3
BraA10t44027Z Brassica rapa HOM05D000116 ORTHO05D000703 7.3e-09 64.3 38 76.3
CSS0010326 Camellia sinensis var. sinensis HOM05D000116 ORTHO05D000703 7.3e-09 64.3 38 65.8
CSS0034533 Camellia sinensis var. sinensis HOM05D000116 ORTHO05D000703 7.3e-09 64.3 38 65.8
CSS0046074 Camellia sinensis var. sinensis HOM05D000116 ORTHO05D000703 7.3e-09 64.3 38 65.8
Ciclev10008911m.g Citrus clementina HOM05D006321 ORTHO05D007929 7.3e-09 64.3 38 71.1
BcaC04g19436 Brassica carinata HOM05D000116 ORTHO05D000703 9.5e-09 63.9 34 85.3
C09p55710 Brassica napus HOM05D000116 ORTHO05D000703 9.5e-09 63.9 34 85.3
DCAR_020140 Daucus carota HOM05D000116 ORTHO05D000703 9.5e-09 63.9 37 75.7
Cc06_g12910 Coffea canephora HOM05D000116 ORTHO05D000703 1.2e-08 63.5 38 65.8
Eucgr.C02279 Eucalyptus grandis HOM05D000116 ORTHO05D000703 1.2e-08 63.5 36 72.2
COL.COLO4_30867 Corchorus olitorius HOM05D000116 ORTHO05D000703 1.6e-08 63.2 38 71.1
Gohir.A08G081900 Gossypium hirsutum HOM05D000116 ORTHO05D000703 1.6e-08 63.2 38 71.1
GSVIVG01029260001 Vitis vinifera HOM05D000116 ORTHO05D000703 1.6e-08 63.2 38 68.4
Rhsim01G0008000 Rhododendron simsii HOM05D007322 ORTHO05D009029 2.1e-08 62.8 39 64.1
Gohir.D08G091300 Gossypium hirsutum HOM05D000116 ORTHO05D000703 3.6e-08 62.0 38 68.4
Gorai.004G096800 Gossypium raimondii HOM05D000116 ORTHO05D000703 3.6e-08 62.0 38 68.4
Solyc11g069860.3 Solanum lycopersicum HOM05D000116 ORTHO05D000703 3.6e-08 62.0 38 63.2
Sopen11g028420 Solanum pennellii HOM05D000116 ORTHO05D000703 3.6e-08 62.0 38 63.2
Aa31LG1G14170 Aethionema arabicum HOM05D000116 ORTHO05D000703 4.7e-08 61.6 34 82.4
THA.LOC104811005 Tarenaya hassleriana HOM05D000116 ORTHO05D000703 4.7e-08 61.6 38 73.7
Cpa.g.sc115.53 Carica papaya HOM05D000116 ORTHO05D000703 6.2e-08 61.2 38 68.4
PGSC0003DMG400008049 Solanum tuberosum HOM05D000116 ORTHO05D000703 6.2e-08 61.2 38 63.2
Carub.0006s1883 Capsella rubella HOM05D000116 ORTHO05D000703 8.1e-08 60.8 34 76.5
AUR62031257 Chenopodium quinoa HOM05D000116 ORTHO05D000703 1.1e-07 60.5 34 73.5
AUR62027444 Chenopodium quinoa HOM05D000116 ORTHO05D000703 1.8e-07 59.7 38 63.2
Oeu009079.1 Olea europaea HOM05D000116 ORTHO05D000703 1.8e-07 59.7 38 68.4
Sc18g0003900 Simmondsia chinensis HOM05D000116 ORTHO05D000703 1.8e-07 59.7 38 60.5
Migut.K00226 Erythranthe guttata HOM05D000116 ORTHO05D000703 2.3e-07 59.3 38 68.4
Oeu052801.1 Olea europaea HOM05D000116 ORTHO05D000703 2.3e-07 59.3 38 68.4
CAN.G631.52 Capsicum annuum HOM05D000116 ORTHO05D000703 3.1e-07 58.9 38 60.5
Nitab4.5_0002461g0050 Nicotiana tabacum HOM05D000116 ORTHO05D000703 3.1e-07 58.9 38 63.2
HPP92_021995 Vanilla planifolia HOM05D000116 ORTHO05D000703 3.1e-07 58.9 34 70.6
Atru.chr7.794 Acer truncatum HOM05D000116 ORTHO05D000703 4.0e-07 58.5 38 65.8
RcHm_v2.0_Chr4g0398351 Rosa chinensis HOM05D000116 ORTHO05D000703 4.0e-07 58.5 38 71.1
HPP92_021960 Vanilla planifolia HOM05D000116 ORTHO05D000703 4.0e-07 58.5 34 70.6
Aqoxy7G02536 Aquilegia oxysepala HOM05D000116 ORTHO05D000703 5.2e-07 58.2 38 60.5
CANSAT01G2935 Cannabis sativa HOM05D000116 ORTHO05D000703 5.2e-07 58.2 38 65.8
TWI32G0584 Tripterygium wilfordii HOM05D000116 ORTHO05D000703 5.2e-07 58.2 38 65.8
TWI32G1256 Tripterygium wilfordii HOM05D000116 ORTHO05D000703 5.2e-07 58.2 38 65.8
ECA236G4191 Erigeron canadensis HOM05D000116 ORTHO05D000703 6.8e-07 57.8 38 60.5
Nitab4.5_0004479g0030 Nicotiana tabacum HOM05D000116 ORTHO05D000703 6.8e-07 57.8 38 60.5
PSO384G1252 Papaver somniferum HOM05D000116 ORTHO05D000703 6.8e-07 57.8 34 67.6
PSO713G0016 Papaver somniferum HOM05D000116 ORTHO05D000703 6.8e-07 57.8 34 67.6
EL10Ac8g19278 Beta vulgaris HOM05D000116 ORTHO05D000703 8.9e-07 57.4 38 63.2
Cfa013481 Carpinus fangiana HOM05D000116 ORTHO05D000703 8.9e-07 57.4 38 68.4
Haze_22061 Corylus avellana HOM05D000116 ORTHO05D000703 8.9e-07 57.4 38 65.8
Glyma.09G062300 Glycine max HOM05D000116 ORTHO05D000703 8.9e-07 57.4 38 65.8
Manes.06G000500 Manihot esculenta HOM05D000116 ORTHO05D000703 8.9e-07 57.4 37 64.9
MSTRG.6244 Avicennia marina HOM05D000116 ORTHO05D000703 1.2e-06 57.0 38 65.8
CiPaw.07G200100 Carya illinoinensis HOM05D000116 ORTHO05D000703 1.2e-06 57.0 38 63.2
Glyma.15G168700 Glycine max HOM05D000116 ORTHO05D000703 1.2e-06 57.0 34 73.5
TPR.G32609 Trifolium pratense HOM05D000116 ORTHO05D000703 1.2e-06 57.0 38 65.8
MD16G1241300 Malus domestica HOM05D000116 ORTHO05D000703 1.5e-06 56.6 38 68.4
Nn5g28750 Nelumbo nucifera HOM05D000116 ORTHO05D000703 1.5e-06 56.6 38 60.5
Prupe.1G068000 Prunus persica HOM05D000116 ORTHO05D000703 1.5e-06 56.6 38 68.4
FAN22G2123 Fragaria x ananassa HOM05D007669 ORTHO05D009624 2.0e-06 56.2 39 64.1
ClCG06G013850 Citrullus lanatus HOM05D000116 ORTHO05D000703 2.6e-06 55.8 38 65.8
FvH4_4g06520 Fragaria vesca HOM05D000116 ORTHO05D000703 2.6e-06 55.8 38 65.8
FAN07G1391 Fragaria x ananassa HOM05D000116 ORTHO05D000703 2.6e-06 55.8 38 65.8
FAN12G0581 Fragaria x ananassa HOM05D000116 ORTHO05D000703 2.6e-06 55.8 38 65.8
FAN17G1888 Fragaria x ananassa HOM05D000116 ORTHO05D000703 2.6e-06 55.8 38 65.8
MBI16_g09333_MAGBIO Magnolia biondii HOM05D007669 ORTHO05D009624 2.6e-06 55.8 38 60.5
Sed0012113 Sechium edule HOM05D000116 ORTHO05D000703 2.6e-06 55.8 38 65.8
CsaV3_1G032050 Cucumis sativus L. HOM05D000116 ORTHO05D000703 3.4e-06 55.5 37 67.6
Potri.018G133400 Populus trichocarpa HOM05D000116 ORTHO05D000703 3.4e-06 55.5 38 57.9
QL11p005610 Quercus lobata HOM05D000116 ORTHO05D000703 3.4e-06 55.5 38 63.2
SalBow6G6504 Salvia bowleyana HOM05D000116 ORTHO05D000703 3.4e-06 55.5 38 63.2
MELO3C017411.2 Cucumis melo HOM05D000116 ORTHO05D000703 4.4e-06 55.1 37 67.6
Medtr2g038560 Medicago truncatula HOM05D000116 ORTHO05D000703 4.4e-06 55.1 38 63.2
VMungo1309G2563 Vigna mungo HOM05D000116 ORTHO05D000703 4.4e-06 55.1 34 70.6
SMO141G0116 Selaginella moellendorffii HOM05D000116 ORTHO05D000703 5.8e-06 54.7 38 65.8
SGA_v2.0_scaffold17G07946 Striga asiatica HOM05D000116 ORTHO05D000703 5.8e-06 54.7 38 63.2
ATR0580G076 Amborella trichopoda HOM05D000116 ORTHO05D000703 7.6e-06 54.3 37 56.8
Phvul.009G233500 Phaseolus vulgaris HOM05D000116 ORTHO05D000703 7.6e-06 54.3 38 63.2
Sed0027181 Sechium edule HOM05D000116 ORTHO05D000703 7.6e-06 54.3 38 63.2


User provided reference genes

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