Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 1.2e-93 346.7 191 100.0
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 5.1e-57 224.9 191 73.8
BcaC04g19454 Brassica carinata HOM05D003803 ORTHO05D004456 1.0e-28 131.0 169 57.4
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 4.4e-24 115.5 216 49.1
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 5.7e-24 115.2 162 51.9
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 9.1e-22 107.8 61 86.9
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 2.5e-19 99.8 61 83.6
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 2.5e-19 99.8 61 83.6
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 1.0e-17 94.4 60 78.3
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 1.8e-17 93.6 60 76.7
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 1.8e-17 93.6 60 76.7
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 6.7e-17 91.7 61 77.0
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 6.7e-17 91.7 61 77.0
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 1.2e-16 90.9 180 43.3
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 2.8e-15 86.3 66 72.7
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 6.3e-15 85.1 61 77.0
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 5.3e-14 82.0 60 71.7
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 1.0e-12 77.8 42 88.1
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 2.2e-12 76.6 45 77.8
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 2.9e-12 76.3 54 70.4
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 3.8e-12 75.9 49 75.5
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 8.5e-12 74.7 45 82.2
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 1.1e-11 74.3 49 73.5
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 1.5e-11 73.9 66 60.6
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.5e-11 73.9 49 73.5
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.9e-11 73.6 44 79.5
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 2.5e-11 73.2 49 73.5
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 3.2e-11 72.8 44 77.3
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 3.2e-11 72.8 49 73.5
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 4.2e-11 72.4 49 71.4
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.2e-11 72.4 52 73.1
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 7.2e-11 71.6 49 69.4
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 7.2e-11 71.6 49 75.5
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 9.4e-11 71.2 50 74.0
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 9.4e-11 71.2 50 74.0
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 9.4e-11 71.2 50 74.0
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 9.4e-11 71.2 50 74.0
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 9.4e-11 71.2 50 74.0
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 9.4e-11 71.2 50 74.0
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 9.4e-11 71.2 44 75.0
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.2e-10 70.9 37 89.2
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.2e-10 70.9 44 79.5
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 1.2e-10 70.9 49 71.4
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 1.6e-10 70.5 42 78.6
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.6e-10 70.5 49 71.4
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 2.1e-10 70.1 37 86.5
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 2.1e-10 70.1 37 86.5
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 2.7e-10 69.7 49 71.4
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 2.7e-10 69.7 49 69.4
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 2.7e-10 69.7 44 77.3
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 3.6e-10 69.3 49 69.4
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 3.6e-10 69.3 44 75.0
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 3.6e-10 69.3 56 58.9
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 3.6e-10 69.3 37 86.5
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 3.6e-10 69.3 44 77.3
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 3.6e-10 69.3 44 75.0
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 3.6e-10 69.3 39 79.5
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 4.7e-10 68.9 42 78.6
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 6.1e-10 68.6 45 75.6
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 8.0e-10 68.2 37 83.8
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 8.0e-10 68.2 62 61.3
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 1.0e-09 67.8 42 76.2
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.0e-09 67.8 37 86.5
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.0e-09 67.8 44 72.7
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 1.0e-09 67.8 42 78.6
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.4e-09 67.4 44 75.0
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 1.4e-09 67.4 37 83.8
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 1.4e-09 67.4 38 78.9
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 1.8e-09 67.0 44 72.7
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 2.3e-09 66.6 33 93.9
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.0e-09 66.2 37 83.8
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 4.0e-09 65.9 37 83.8
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 5.2e-09 65.5 37 81.1
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 5.2e-09 65.5 37 83.8
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 5.2e-09 65.5 37 81.1
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 5.2e-09 65.5 37 83.8
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 5.2e-09 65.5 37 81.1
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 5.2e-09 65.5 37 81.1
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 8.8e-09 64.7 60 61.7
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 8.8e-09 64.7 33 90.9
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 1.2e-08 64.3 41 73.2
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.5e-08 63.9 40 75.0
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.5e-08 63.9 37 78.4
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.5e-08 63.9 37 78.4
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.5e-08 63.9 37 78.4
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 2.0e-08 63.5 133 42.1
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 2.0e-08 63.5 49 63.3
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 2.0e-08 63.5 37 78.4
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.6e-08 63.2 37 81.1
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.4e-08 62.8 49 65.3
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.4e-08 62.8 49 65.3
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 5.7e-08 62.0 34 85.3
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 5.7e-08 62.0 151 36.4
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 7.5e-08 61.6 37 78.4
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 7.5e-08 61.6 37 75.7
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 7.5e-08 61.6 37 81.1
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 7.5e-08 61.6 37 81.1
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 7.5e-08 61.6 32 87.5
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 9.8e-08 61.2 37 78.4
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 1.3e-07 60.8 185 38.9
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.7e-07 60.5 42 71.4
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.7e-07 60.5 49 63.3
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.7e-07 60.5 43 65.1
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 2.2e-07 60.1 37 78.4
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 3.7e-07 59.3 37 81.1
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 3.7e-07 59.3 37 75.7
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 4.8e-07 58.9 153 39.2
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 6.3e-07 58.5 39 69.2
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 6.3e-07 58.5 39 69.2
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 8.3e-07 58.2 37 75.7
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 8.3e-07 58.2 31 80.6
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 8.3e-07 58.2 31 80.6
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.1e-06 57.8 34 76.5
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 1.8e-06 57.0 31 80.6
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 4.1e-06 55.8 44 68.2
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 5.4e-06 55.5 188 36.2
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 7.0e-06 55.1 171 36.8


User provided reference genes

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