Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22791 Brassica carinata HOM05D000359 ORTHO05D000251 8.2e-36 153.3 83 100.0
BcaC09g50203 Brassica carinata HOM05D000359 ORTHO05D000251 5.2e-22 107.5 66 89.4
A01p22330 Brassica napus HOM05D000359 ORTHO05D000251 5.2e-22 107.5 66 89.4
C01p27880 Brassica napus HOM05D000359 ORTHO05D000251 5.2e-22 107.5 66 89.4
BraA01t02148Z Brassica rapa HOM05D000359 ORTHO05D000251 5.2e-22 107.5 66 89.4
BolC1t02721H Brassica oleracea HOM05D000359 ORTHO05D000251 6.7e-22 107.1 66 87.9
BcaNung00297 Brassica carinata HOM05D000359 ORTHO05D000251 8.8e-22 106.7 67 88.1
BcaNung00299 Brassica carinata HOM05D000359 ORTHO05D000251 8.8e-22 106.7 67 88.1
Sp7g13410 Schrenkiella parvula HOM05D000359 ORTHO05D000251 2.2e-20 102.1 67 83.6
Thhalv10024386m.g Eutrema salsugineum HOM05D000359 ORTHO05D000251 2.4e-19 98.6 68 82.4
C01p22030 Brassica napus HOM05D000359 ORTHO05D000251 1.2e-18 96.3 72 75.0
CARHR221920 Cardamine hirsuta HOM05D000359 ORTHO05D000251 1.3e-17 92.8 67 73.1
Carub.0007s2676 Capsella rubella HOM05D000359 ORTHO05D000251 3.8e-17 91.3 67 73.1
BraA05t20608Z Brassica rapa HOM05D000359 ORTHO05D000251 1.1e-16 89.7 71 74.6
A05p17070 Brassica napus HOM05D000359 ORTHO05D000251 1.9e-16 89.0 73 72.6
BcaC08g44244 Brassica carinata HOM05D000359 ORTHO05D000251 4.2e-16 87.8 71 73.2
C06p16480 Brassica napus HOM05D000359 ORTHO05D000251 4.2e-16 87.8 71 73.2
BolC6t36851H Brassica oleracea HOM05D000359 ORTHO05D000251 4.2e-16 87.8 71 73.2
AL7G40490 Arabidopsis lyrata HOM05D000359 ORTHO05D000251 5.5e-16 87.4 66 75.8
BcaB02g07834 Brassica carinata HOM05D000359 ORTHO05D000251 1.2e-15 86.3 70 75.7
Aa31LG9G2220 Aethionema arabicum HOM05D000359 ORTHO05D000251 4.7e-15 84.3 67 65.7
THA.LOC104802535 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 5.2e-14 80.9 67 67.2
BolC1t02132H Brassica oleracea HOM05D000359 ORTHO05D000251 2.2e-12 75.5 58 72.4
COL.COLO4_09553 Corchorus olitorius HOM05D000359 ORTHO05D000251 2.2e-09 65.5 67 50.7
VMungo1080G0375 Vigna mungo HOM05D000359 ORTHO05D000251 2.9e-09 65.1 65 55.4
Thecc.07G055400 Theobroma cacao HOM05D000359 ORTHO05D000251 3.8e-09 64.7 66 51.5
Atru.chr6.3123 Acer truncatum HOM05D000359 ORTHO05D000251 5.0e-09 64.3 75 46.7
Duzib213G1041 Durio zibethinus HOM05D000359 ORTHO05D000251 5.0e-09 64.3 66 51.5
Duzib268G1303 Durio zibethinus HOM05D000359 ORTHO05D000251 5.0e-09 64.3 66 51.5
Sabra07G0097300 Salix brachista HOM05D000359 ORTHO05D000251 5.0e-09 64.3 75 49.3
Haze_12943 Corylus avellana HOM05D000359 ORTHO05D000251 1.1e-08 63.2 75 48.0
PSO541G6084 Papaver somniferum HOM05D000359 ORTHO05D000251 1.1e-08 63.2 65 52.3
PSO675G1110 Papaver somniferum HOM05D000359 ORTHO05D000251 1.1e-08 63.2 65 52.3
Cfa014453 Carpinus fangiana HOM05D000359 ORTHO05D000251 1.5e-08 62.8 75 48.0
Psat5g289840 Pisum sativum HOM05D000359 ORTHO05D000251 1.5e-08 62.8 65 50.8
TWI36G0319 Tripterygium wilfordii HOM05D000359 ORTHO05D000251 1.5e-08 62.8 75 45.3
Lj3g0022499 Lotus japonicus HOM05D000359 ORTHO05D000251 1.9e-08 62.4 65 52.3
TPR.G30801 Trifolium pratense HOM05D000359 ORTHO05D000251 1.9e-08 62.4 74 45.9
TWI18G0098 Tripterygium wilfordii HOM05D000359 ORTHO05D000251 1.9e-08 62.4 75 46.7
Ah.04g165490 Amaranthus hybridus HOM05D000359 ORTHO05D000251 3.2e-08 61.6 74 50.0
Phvul.005G090500 Phaseolus vulgaris HOM05D000359 ORTHO05D000251 3.2e-08 61.6 65 52.3
QL08p013840 Quercus lobata HOM05D000359 ORTHO05D000251 3.2e-08 61.6 75 48.0
Prupe.3G222000 Prunus persica HOM05D000359 ORTHO05D000251 4.2e-08 61.2 67 49.3
GSVIVG01014581001 Vitis vinifera HOM05D000359 ORTHO05D000251 4.2e-08 61.2 66 50.0
GSVIVG01030643001 Vitis vinifera HOM05D000359 ORTHO05D000251 4.2e-08 61.2 67 52.2
Cpa.g.sc8.250 Carica papaya HOM05D000359 ORTHO05D000251 5.5e-08 60.8 76 50.0
MD09G1103500 Malus domestica HOM05D000359 ORTHO05D000251 5.5e-08 60.8 65 50.8
Potri.007G119900 Populus trichocarpa HOM05D000359 ORTHO05D000251 5.5e-08 60.8 75 48.0
arahy.Tifrunner.gnm1.ann1.C1383N Arachis hypogaea HOM05D000359 ORTHO05D000251 7.2e-08 60.5 65 49.2
arahy.Tifrunner.gnm1.ann1.W0I3S7 Arachis hypogaea HOM05D000359 ORTHO05D000251 7.2e-08 60.5 65 49.2
Glyma.13G286100 Glycine max HOM05D000359 ORTHO05D000251 7.2e-08 60.5 65 52.3
TWI38G0242 Tripterygium wilfordii HOM05D000359 ORTHO05D000251 7.2e-08 60.5 74 41.9
TWI39G0270 Tripterygium wilfordii HOM05D000359 ORTHO05D000251 7.2e-08 60.5 74 41.9
CSS0026200 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 1.2e-07 59.7 75 41.3
CiPaw.04G118700 Carya illinoinensis HOM05D000359 ORTHO05D000251 1.2e-07 59.7 75 42.7
CiPaw.11G182700 Carya illinoinensis HOM05D000359 ORTHO05D000251 1.6e-07 59.3 74 48.6
Ca_01567_v3 Cicer arietinum L. HOM05D000404 ORTHO05D000251 1.6e-07 59.3 74 43.2
MELO3C019225.2 Cucumis melo HOM05D000359 ORTHO05D000251 1.6e-07 59.3 76 47.4
Lalb_Chr03g0028971 Lupinus albus HOM05D000359 ORTHO05D000251 1.6e-07 59.3 67 47.8
Nn1g03724 Nelumbo nucifera HOM05D000359 ORTHO05D000251 1.6e-07 59.3 75 48.0
Atru.chr2.3168 Acer truncatum HOM05D000359 ORTHO05D000251 2.1e-07 58.9 74 44.6
Cpa.g.sc97.84 Carica papaya HOM05D000359 ORTHO05D000251 2.1e-07 58.9 74 47.3
Eucgr.A01735 Eucalyptus grandis HOM05D000359 ORTHO05D000251 2.1e-07 58.9 74 43.2
Glyma.12G215400 Glycine max HOM05D000359 ORTHO05D000251 2.1e-07 58.9 65 49.2
Gohir.A13G141900 Gossypium hirsutum HOM05D000359 ORTHO05D000251 2.1e-07 58.9 66 47.0
Gohir.D13G146600 Gossypium hirsutum HOM05D000359 ORTHO05D000251 2.1e-07 58.9 66 47.0
Gorai.013G164400 Gossypium raimondii HOM05D000359 ORTHO05D000251 2.1e-07 58.9 66 47.0
MD17G1091400 Malus domestica HOM05D000359 ORTHO05D000251 2.1e-07 58.9 65 50.8
Nitab4.5_0000397g0130 Nicotiana tabacum HOM05D000359 ORTHO05D000251 2.1e-07 58.9 75 44.0
Nitab4.5_0002238g0040 Nicotiana tabacum HOM05D000359 ORTHO05D000251 2.1e-07 58.9 74 45.9
Prupe.4G201000 Prunus persica HOM05D000359 ORTHO05D000251 2.1e-07 58.9 75 42.7
CSS0015435 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 2.7e-07 58.5 75 41.3
Peaxi162Scf01086g00029 Petunia axillaris HOM05D000359 ORTHO05D000251 2.7e-07 58.5 74 45.9
Psat5g265840 Pisum sativum HOM05D000359 ORTHO05D000251 2.7e-07 58.5 66 48.5
Ciclev10017933m.g Citrus clementina HOM05D000359 ORTHO05D000251 3.6e-07 58.2 77 45.5
Medtr2g082190 Medicago truncatula HOM05D000359 ORTHO05D000251 3.6e-07 58.2 65 49.2
Potri.011G131700 Populus trichocarpa HOM05D000359 ORTHO05D000251 3.6e-07 58.2 76 48.7
CiPaw.03G164000 Carya illinoinensis HOM05D000359 ORTHO05D000251 4.7e-07 57.8 69 47.8
Lsat_1_v5_gn_5_4561 Lactuca sativa HOM05D000359 ORTHO05D000251 4.7e-07 57.8 76 43.4
Lj3g0000844 Lotus japonicus HOM05D000359 ORTHO05D000251 4.7e-07 57.8 65 47.7
MD03G1213400 Malus domestica HOM05D000359 ORTHO05D000251 4.7e-07 57.8 74 43.2
Medtr2g089040 Medicago truncatula HOM05D000359 ORTHO05D000251 4.7e-07 57.8 74 40.5
MSTRG.15169 Avicennia marina HOM05D000359 ORTHO05D000251 6.1e-07 57.4 65 47.7
CSS0044110 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 6.1e-07 57.4 75 42.7
Ciclev10010684m.g Citrus clementina HOM05D000359 ORTHO05D000251 6.1e-07 57.4 77 46.8
FvH4_3g21670 Fragaria vesca HOM05D000359 ORTHO05D000251 6.1e-07 57.4 74 43.2
FAN11G3509 Fragaria x ananassa HOM05D000359 ORTHO05D000251 6.1e-07 57.4 74 43.2
FAN16G2098 Fragaria x ananassa HOM05D000359 ORTHO05D000251 6.1e-07 57.4 74 43.2
Hma1.2p1_0439F.1_g153200 Hydrangea macrophylla HOM05D000359 ORTHO05D000251 6.1e-07 57.4 75 44.0
Ca_18841_v3 Cicer arietinum L. HOM05D000359 ORTHO05D000251 8.0e-07 57.0 75 41.3
Dinv03945 Davidia involucrata HOM05D000359 ORTHO05D000251 8.0e-07 57.0 74 47.3
Sabra11G0118700 Salix brachista HOM05D000359 ORTHO05D000251 8.0e-07 57.0 76 48.7
THA.LOC104799887 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 8.0e-07 57.0 75 48.0
THA.LOC104799888 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 8.0e-07 57.0 75 48.0
AUR62029240 Chenopodium quinoa HOM05D000359 ORTHO05D000251 1.0e-06 56.6 75 46.7
ClCG02G008340 Citrullus lanatus HOM05D000359 ORTHO05D000251 1.0e-06 56.6 76 46.1
Lalb_Chr24g0400321 Lupinus albus HOM05D000359 ORTHO05D000251 1.0e-06 56.6 65 49.2
Manes.13G074601 Manihot esculenta HOM05D000359 ORTHO05D000251 1.0e-06 56.6 75 46.7
TPR.G19051 Trifolium pratense HOM05D000359 ORTHO05D000251 1.0e-06 56.6 74 44.6
TAR624G0422 Trochodendron aralioides HOM05D000359 ORTHO05D000251 1.0e-06 56.6 75 45.3
vmacro11773 Vaccinium macrocarpon HOM05D000359 ORTHO05D000251 1.0e-06 56.6 66 50.0
Lj3g0003917 Lotus japonicus HOM05D000359 ORTHO05D000251 1.4e-06 56.2 76 46.1
QL08p034073 Quercus lobata HOM05D000359 ORTHO05D000251 1.4e-06 56.2 75 45.3
Actinidia09954 Actinidia chinensis HOM05D000359 ORTHO05D000251 1.8e-06 55.8 74 44.6
AUR62015632 Chenopodium quinoa HOM05D000359 ORTHO05D000251 1.8e-06 55.8 75 46.7
Oeu019126.1 Olea europaea HOM05D000359 ORTHO05D000251 1.8e-06 55.8 75 42.7
Solyc10g006540.4 Solanum lycopersicum HOM05D000359 ORTHO05D000251 1.8e-06 55.8 75 46.7
Sopen10g002490 Solanum pennellii HOM05D000359 ORTHO05D000251 1.8e-06 55.8 75 46.7
AL8G30100 Arabidopsis lyrata HOM05D000359 ORTHO05D000251 2.3e-06 55.5 67 52.2
AT5G54650 Arabidopsis thaliana HOM05D000359 ORTHO05D000251 2.3e-06 55.5 67 50.7
Carub.0008s1491 Capsella rubella HOM05D000359 ORTHO05D000251 2.3e-06 55.5 75 48.0
CAN.G337.157 Capsicum annuum HOM05D000359 ORTHO05D000251 2.3e-06 55.5 74 43.2
Dinv18543 Davidia involucrata HOM05D000359 ORTHO05D000251 2.3e-06 55.5 75 41.3
FAN21G2111 Fragaria x ananassa HOM05D000359 ORTHO05D000251 2.3e-06 55.5 74 41.9
Nitab4.5_0000780g0040 Nicotiana tabacum HOM05D000359 ORTHO05D000251 2.3e-06 55.5 75 42.7
arahy.Tifrunner.gnm1.ann1.8L3EY1 Arachis hypogaea HOM05D000359 ORTHO05D000251 3.0e-06 55.1 75 45.3
arahy.Tifrunner.gnm1.ann1.ZW8ZX0 Arachis hypogaea HOM05D000359 ORTHO05D000251 3.0e-06 55.1 75 46.7
CsaV3_2G035270 Cucumis sativus L. HOM05D000359 ORTHO05D000251 3.0e-06 55.1 76 46.1
Dinv10906 Davidia involucrata HOM05D000359 ORTHO05D000251 3.0e-06 55.1 75 41.3
Glyma.12G102700 Glycine max HOM05D000359 ORTHO05D000251 3.0e-06 55.1 75 42.7
THA.LOC104809277 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 3.0e-06 55.1 75 45.3
CAN.G1110.15 Capsicum annuum HOM05D000359 ORTHO05D000251 4.0e-06 54.7 75 46.7
Cfa020438 Carpinus fangiana HOM05D000359 ORTHO05D000251 4.0e-06 54.7 74 44.6
Medtr4g045670 Medicago truncatula HOM05D000359 ORTHO05D000251 4.0e-06 54.7 75 45.3
Nitab4.5_0002342g0130 Nicotiana tabacum HOM05D000359 ORTHO05D000251 4.0e-06 54.7 75 46.7
Peaxi162Scf00315g01119 Petunia axillaris HOM05D000359 ORTHO05D000251 4.0e-06 54.7 75 41.3
RcHm_v2.0_Chr5g0037151 Rosa chinensis HOM05D000359 ORTHO05D000251 4.0e-06 54.7 74 43.2
CARHR267960 Cardamine hirsuta HOM05D000359 ORTHO05D000251 5.2e-06 54.3 67 49.3
Glyma.06G301700 Glycine max HOM05D000359 ORTHO05D000251 5.2e-06 54.3 75 42.7
MD11G1228300 Malus domestica HOM05D000359 ORTHO05D000251 5.2e-06 54.3 76 43.4
Nn1g06946 Nelumbo nucifera HOM05D000359 ORTHO05D000251 5.2e-06 54.3 75 42.7
PGR042G0374 Punica granatum HOM05D000359 ORTHO05D000251 5.2e-06 54.3 75 44.0
CANSAT11G0182 Cannabis sativa HOM05D000359 ORTHO05D000251 6.8e-06 53.9 80 41.2
Ca_20673_v3 Cicer arietinum L. HOM05D000359 ORTHO05D000251 6.8e-06 53.9 74 41.9
Cc05_g06090 Coffea canephora HOM05D000359 ORTHO05D000251 6.8e-06 53.9 75 41.3
DCAR_000397 Daucus carota HOM05D000359 ORTHO05D000251 6.8e-06 53.9 66 45.5
Psat7g197920 Pisum sativum HOM05D000359 ORTHO05D000251 6.8e-06 53.9 75 41.3
PGSC0003DMG400014098 Solanum tuberosum HOM05D000359 ORTHO05D000251 6.8e-06 53.9 75 44.0
Aa31LG3G10580 Aethionema arabicum HOM05D000359 ORTHO05D000251 8.8e-06 53.5 75 44.0
Haze_09590 Corylus avellana HOM05D000359 ORTHO05D000251 8.8e-06 53.5 74 43.2
Eucgr.F01000 Eucalyptus grandis HOM05D000359 ORTHO05D000251 8.8e-06 53.5 70 48.6
FAN25G0314 Fragaria x ananassa HOM05D000359 ORTHO05D000251 8.8e-06 53.5 74 40.5
PGR083G1534 Punica granatum HOM05D000359 ORTHO05D000251 8.8e-06 53.5 74 44.6
Hund23321 Selenicereus undatus HOM05D000359 ORTHO05D000251 8.8e-06 53.5 74 41.9


User provided reference genes

Program Settings