Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 1.7e-120 436.0 227 100.0
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 8.0e-118 427.2 227 99.1
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 8.0e-118 427.2 227 99.1
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 8.0e-118 427.2 227 99.1
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 1.1e-117 426.8 227 98.7
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 3.1e-117 425.2 227 98.2
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 2.0e-116 422.5 227 98.2
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 4.4e-116 421.4 227 98.7
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 2.2e-115 419.1 227 97.4
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 1.9e-114 416.0 227 95.6
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 3.2e-114 415.2 227 96.9
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 9.2e-114 413.7 227 96.9
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 1.2e-113 413.3 227 95.2
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 1.6e-113 412.9 227 96.9
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 1.6e-113 412.9 227 96.9
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 3.5e-113 411.8 228 95.2
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 3.5e-113 411.8 228 95.2
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 5.6e-111 404.4 227 95.2
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 4.9e-107 391.3 227 90.3
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.9e-106 389.4 227 89.9
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 1.9e-106 389.4 229 89.1
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 2.4e-106 389.0 230 89.1
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 6.0e-105 384.4 227 88.5
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.3e-104 383.3 225 89.3
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 2.3e-104 382.5 226 88.9
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 5.1e-104 381.3 230 87.8
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 5.1e-104 381.3 231 87.4
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 5.1e-104 381.3 230 88.7
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 6.6e-104 380.9 231 87.4
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 8.6e-104 380.6 230 88.3
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.1e-103 380.2 231 87.4
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.1e-103 380.2 231 87.4
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 1.5e-103 379.8 227 88.5
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 1.9e-103 379.4 225 89.3
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 2.5e-103 379.0 212 93.4
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 2.5e-103 379.0 216 90.7
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 2.5e-103 379.0 232 86.2
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 3.3e-103 378.6 224 87.9
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 3.3e-103 378.6 224 87.9
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 4.3e-103 378.3 227 87.7
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 7.3e-103 377.5 227 88.5
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 7.3e-103 377.5 227 87.2
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 7.3e-103 377.5 227 85.5
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 9.6e-103 377.1 227 87.7
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 9.6e-103 377.1 227 87.2
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 1.6e-102 376.3 229 87.3
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.6e-102 376.3 229 86.0
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 2.1e-102 375.9 234 85.0
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 2.1e-102 375.9 231 86.6
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 2.1e-102 375.9 224 89.3
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 2.1e-102 375.9 224 87.5
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 2.8e-102 375.6 231 86.6
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 2.8e-102 375.6 232 85.3
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 2.8e-102 375.6 232 86.2
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 3.6e-102 375.2 225 87.1
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.6e-102 375.2 227 87.2
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 4.7e-102 374.8 227 86.3
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 4.7e-102 374.8 231 86.6
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 6.2e-102 374.4 230 87.0
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 6.2e-102 374.4 227 88.1
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 6.2e-102 374.4 225 88.4
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 1.1e-101 373.6 231 85.3
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 1.8e-101 372.9 210 91.4
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 1.8e-101 372.9 227 85.5
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 2.4e-101 372.5 208 92.8
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 2.4e-101 372.5 232 85.8
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 2.4e-101 372.5 232 85.8
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 4.0e-101 371.7 229 85.6
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 4.0e-101 371.7 227 86.8
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 4.0e-101 371.7 226 88.1
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 4.0e-101 371.7 224 87.1
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 4.0e-101 371.7 225 86.7
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 5.2e-101 371.3 229 86.5
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 5.2e-101 371.3 210 91.9
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 8.9e-101 370.5 225 85.3
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 8.9e-101 370.5 208 92.8
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 1.2e-100 370.2 230 84.8
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.2e-100 370.2 231 86.6
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 1.5e-100 369.8 212 90.1
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 1.5e-100 369.8 227 85.5
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 2.0e-100 369.4 230 84.8
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 2.6e-100 369.0 224 87.1
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 3.4e-100 368.6 208 90.9
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 3.4e-100 368.6 224 87.5
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 4.4e-100 368.2 230 85.2
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 4.4e-100 368.2 224 87.5
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 7.6e-100 367.5 207 93.2
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 9.9e-100 367.1 225 84.9
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 1.7e-99 366.3 223 86.5
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 1.7e-99 366.3 204 94.6
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 2.2e-99 365.9 227 85.5
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.9e-99 365.5 257 79.0
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 2.9e-99 365.5 206 91.7
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 6.4e-99 364.4 231 83.5
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 1.1e-98 363.6 231 84.4
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 1.1e-98 363.6 228 85.5
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 3.2e-98 362.1 229 83.0
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 4.2e-98 361.7 208 90.9
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 7.1e-98 360.9 231 82.7
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 7.1e-98 360.9 224 81.7
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 1.6e-97 359.8 219 84.9
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 2.1e-97 359.4 231 83.5
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 2.7e-97 359.0 207 91.3
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 3.5e-97 358.6 206 91.3
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 4.6e-97 358.2 224 81.2
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 4.6e-97 358.2 207 89.4
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 1.0e-96 357.1 203 90.6
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 1.3e-96 356.7 224 83.9
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 1.7e-96 356.3 225 82.2
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 4.0e-93 345.1 228 81.1
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 5.3e-93 344.7 215 82.8
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 2.4e-90 335.9 300 64.3
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 1.2e-89 333.6 233 78.1
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 3.0e-88 328.9 192 89.6
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 4.3e-87 325.1 208 80.8
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 5.8e-84 314.7 203 77.8
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 3.8e-83 312.0 212 76.9
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 2.1e-78 296.2 211 73.9
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 1.8e-77 293.1 190 82.6
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 4.9e-75 285.0 194 81.4
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.5e-74 282.7 162 90.7
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 4.2e-74 282.0 179 86.0
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 1.6e-73 280.0 157 94.3
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 2.7e-73 279.3 157 92.4
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 3.5e-73 278.9 175 82.3
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 6.0e-73 278.1 157 93.0
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 1.6e-70 270.0 192 78.6
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.1e-69 267.3 186 76.9
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 1.4e-69 266.9 170 83.5
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.8e-69 266.5 180 77.2
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 9.0e-69 264.2 161 88.8
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 3.4e-60 235.7 160 77.5
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 2.4e-53 213.0 124 89.5
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 4.5e-52 208.8 175 69.1
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.0e-43 181.0 109 89.0
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 3.2e-42 176.0 103 89.3
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 8.8e-40 167.9 97 90.7
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 6.5e-35 151.8 157 56.1
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 4.7e-33 145.6 87 88.5
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 1.4e-29 134.0 79 83.5
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 3.6e-25 119.4 206 38.3
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 4.0e-24 115.9 78 78.2
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 2.2e-22 110.2 57 93.0
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 4.7e-17 92.4 66 69.7
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 3.0e-16 89.7 63 74.6
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 1.5e-15 87.4 65 67.7
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 1.9e-10 70.5 46 76.1


User provided reference genes

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