Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 2.0e-62 242.3 122 100.0
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 1.7e-18 96.3 157 41.4
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.7e-18 96.3 157 41.4
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 1.7e-18 96.3 157 41.4
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.7e-18 96.3 83 68.7
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 6.6e-18 94.4 54 87.0
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.1e-17 93.6 157 40.8
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 2.1e-16 89.4 83 61.4
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 3.6e-16 88.6 53 81.1
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 2.4e-15 85.9 140 42.1
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.3e-13 80.1 56 69.6
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 2.2e-13 79.3 43 90.7
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 3.8e-13 78.6 99 44.4
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 3.8e-13 78.6 53 71.7
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 3.8e-13 78.6 54 66.7
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 1.1e-12 77.0 78 53.8
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 2.4e-12 75.9 54 68.5
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 3.2e-12 75.5 77 51.9
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 4.2e-12 75.1 76 48.7
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 4.2e-12 75.1 94 45.7
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.2e-12 75.1 77 53.2
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 7.1e-12 74.3 78 52.6
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 9.3e-12 73.9 74 52.7
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.2e-11 73.6 53 62.3
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 1.6e-11 73.2 42 85.7
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 1.6e-11 73.2 77 51.9
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.6e-11 73.2 77 51.9
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.6e-11 73.2 77 51.9
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.6e-11 73.2 77 51.9
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.1e-11 72.8 54 59.3
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 2.7e-11 72.4 77 51.9
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 2.7e-11 72.4 54 63.0
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 3.5e-11 72.0 54 66.7
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 3.5e-11 72.0 90 44.4
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 4.6e-11 71.6 76 47.4
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 4.6e-11 71.6 78 51.3
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 4.6e-11 71.6 53 64.2
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 4.6e-11 71.6 56 64.3
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 6.0e-11 71.2 53 64.2
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 6.0e-11 71.2 77 51.9
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 7.9e-11 70.9 77 48.1
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 7.9e-11 70.9 42 81.0
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 1.0e-10 70.5 94 43.6
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 1.3e-10 70.1 55 60.0
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.8e-10 69.7 41 82.9
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.8e-10 69.7 39 87.2
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 3.0e-10 68.9 94 42.6
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 3.0e-10 68.9 77 48.1
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 3.9e-10 68.6 81 49.4
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 3.9e-10 68.6 81 49.4
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 5.1e-10 68.2 39 84.6
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 5.1e-10 68.2 106 36.8
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 6.7e-10 67.8 105 38.1
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-09 67.0 99 39.4
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 1.1e-09 67.0 59 57.6
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 1.9e-09 66.2 52 61.5
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.9e-09 66.2 52 61.5
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 2.5e-09 65.9 77 48.1
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 3.3e-09 65.5 81 48.1
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.3e-09 65.5 55 58.2
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 3.3e-09 65.5 52 59.6
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 4.3e-09 65.1 54 57.4
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 4.3e-09 65.1 52 63.5
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 4.3e-09 65.1 93 40.9
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 5.6e-09 64.7 78 44.9
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 5.6e-09 64.7 84 44.0
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 9.6e-09 63.9 52 59.6
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 9.6e-09 63.9 94 39.4
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.3e-08 63.5 51 58.8
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 1.6e-08 63.2 53 56.6
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 1.6e-08 63.2 73 47.9
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 2.1e-08 62.8 93 37.6
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 2.8e-08 62.4 53 54.7
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 3.7e-08 62.0 52 57.7
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 4.8e-08 61.6 53 54.7
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 4.8e-08 61.6 56 53.6
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 4.8e-08 61.6 76 43.4
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 6.2e-08 61.2 53 54.7
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 6.2e-08 61.2 82 40.2
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 6.2e-08 61.2 76 43.4
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 8.1e-08 60.8 77 45.5
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 1.4e-07 60.1 94 40.4
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.4e-07 60.1 94 40.4
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.8e-07 59.7 51 54.9
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 2.4e-07 59.3 52 51.9
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 3.1e-07 58.9 94 38.3
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 3.1e-07 58.9 77 42.9
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 3.1e-07 58.9 55 50.9
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 4.0e-07 58.5 52 55.8
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 5.3e-07 58.2 53 52.8
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 5.3e-07 58.2 67 49.3
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 5.3e-07 58.2 78 43.6
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 5.3e-07 58.2 78 43.6
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 5.3e-07 58.2 77 44.2
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 5.3e-07 58.2 53 52.8
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 6.9e-07 57.8 50 54.0
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 6.9e-07 57.8 57 50.9
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 6.9e-07 57.8 76 39.5
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 6.9e-07 57.8 53 50.9
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 9.0e-07 57.4 51 51.0
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 1.2e-06 57.0 52 53.8
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 1.5e-06 56.6 98 35.7
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 2.6e-06 55.8 66 47.0
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 3.4e-06 55.5 54 51.9
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 3.4e-06 55.5 54 48.1
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 3.4e-06 55.5 56 46.4
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 3.4e-06 55.5 76 42.1
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 4.5e-06 55.1 62 48.4
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 5.8e-06 54.7 51 52.9
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 7.6e-06 54.3 53 50.9
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 7.6e-06 54.3 64 45.3
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 1.0e-05 53.9 54 46.3


User provided reference genes

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