Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 1.1e-69 266.5 132 100.0
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 3.0e-64 248.4 136 92.6
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 1.9e-63 245.7 133 94.0
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 1.9e-63 245.7 133 94.0
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 1.9e-63 245.7 133 94.0
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 2.5e-63 245.4 133 94.0
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 4.3e-63 244.6 133 93.2
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 2.4e-61 238.8 136 87.5
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 3.1e-61 238.4 135 88.9
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.1e-58 229.9 134 86.6
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.4e-58 228.8 133 86.5
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 1.0e-56 223.4 133 83.5
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 1.5e-55 219.5 143 79.0
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 8.1e-54 213.8 130 81.5
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 3.8e-51 204.9 133 82.0
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 6.2e-46 187.6 129 73.6
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.2e-44 183.3 135 68.9
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.2e-44 183.3 135 68.9
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.8e-37 159.5 116 69.0
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 9.0e-37 157.1 132 59.8
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 1.5e-36 156.4 103 78.6
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 1.5e-36 156.4 103 78.6
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.7e-35 152.9 133 59.4
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 3.8e-35 151.8 97 82.5
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 3.8e-35 151.8 130 60.8
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 6.5e-35 151.0 132 54.5
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 8.5e-35 150.6 143 55.9
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.4e-34 149.8 133 58.6
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 2.5e-34 149.1 130 60.8
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 1.2e-33 146.7 132 57.6
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 1.2e-33 146.7 131 58.8
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.6e-33 146.4 133 57.9
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.6e-33 146.4 139 54.7
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 3.6e-33 145.2 133 57.9
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 7.9e-33 144.1 132 59.1
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 7.9e-33 144.1 129 57.4
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 7.9e-33 144.1 130 57.7
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 1.0e-32 143.7 132 62.9
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 1.0e-32 143.7 134 57.5
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 2.3e-32 142.5 135 51.9
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 3.0e-32 142.1 124 57.3
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 3.9e-32 141.7 130 56.9
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 8.7e-32 140.6 139 53.2
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.5e-31 139.8 134 56.7
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 1.9e-31 139.4 131 55.0
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 2.5e-31 139.0 133 55.6
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 4.3e-31 138.3 130 53.1
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 5.7e-31 137.9 134 53.7
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 5.7e-31 137.9 137 53.3
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 5.7e-31 137.9 131 55.7
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 7.4e-31 137.5 132 53.0
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 2.8e-30 135.6 143 51.7
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 4.8e-30 134.8 127 54.3
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 1.1e-29 133.7 128 51.6
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.4e-29 133.3 131 51.1
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.4e-29 133.3 131 51.1
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.4e-29 133.3 137 52.6
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 2.4e-29 132.5 144 53.5
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 6.9e-29 131.0 129 54.3
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 1.2e-28 130.2 146 50.7
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 2.0e-28 129.4 132 53.0
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 2.0e-28 129.4 121 53.7
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 3.4e-28 128.6 146 50.0
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 5.9e-28 127.9 127 52.8
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 7.7e-28 127.5 138 51.4
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.0e-27 127.1 132 50.8
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 1.0e-27 127.1 130 50.8
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.3e-27 126.7 128 50.0
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 2.2e-27 125.9 132 51.5
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 2.9e-27 125.6 114 56.1
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 3.8e-27 125.2 130 52.3
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.1e-26 123.6 128 48.4
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 1.4e-26 123.2 135 51.1
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.9e-26 122.9 122 54.1
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 1.9e-26 122.9 122 54.1
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 2.5e-26 122.5 114 52.6
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 2.5e-26 122.5 134 51.5
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 1.2e-25 120.2 129 51.9
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 1.2e-25 120.2 114 56.1
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 1.6e-25 119.8 111 54.1
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.6e-25 119.8 122 52.5
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.1e-25 119.4 116 51.7
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 4.7e-25 118.2 145 49.7
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 7.9e-25 117.5 124 48.4
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 7.9e-25 117.5 117 53.0
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.0e-24 117.1 128 46.1
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 1.8e-24 116.3 146 45.9
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 5.1e-24 114.8 112 51.8
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 2.0e-23 112.8 124 47.6
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 2.0e-23 112.8 115 56.5
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.6e-23 112.5 105 53.3
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 2.6e-23 112.5 112 57.1
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 5.7e-23 111.3 113 49.6
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 7.4e-23 110.9 117 49.6
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 9.7e-23 110.5 129 47.3
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 2.8e-22 109.0 105 55.2
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 3.7e-22 108.6 115 53.9
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 3.7e-22 108.6 113 49.6
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 6.3e-22 107.8 71 70.4
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 6.3e-22 107.8 136 44.9
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 1.1e-21 107.1 116 54.3
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 1.4e-21 106.7 116 49.1
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 1.8e-21 106.3 111 49.5
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 2.4e-21 105.9 113 50.4
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 2.4e-21 105.9 109 45.0
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 3.1e-21 105.5 80 61.2
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 3.1e-21 105.5 97 55.7
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 9.1e-21 104.0 111 51.4
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 2.0e-20 102.8 115 46.1
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 2.6e-20 102.4 125 46.4
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 7.7e-20 100.9 65 73.8
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 1.0e-19 100.5 122 45.1
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.3e-19 100.1 201 34.3
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 1.3e-19 100.1 119 46.2
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 1.7e-19 99.8 95 56.8
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 2.9e-19 99.0 97 51.5
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 6.5e-19 97.8 105 50.5
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 1.1e-18 97.1 127 44.9
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 1.4e-18 96.7 67 64.2
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 2.5e-18 95.9 137 38.7
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 4.2e-18 95.1 143 37.1
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.6e-17 93.2 139 40.3
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 6.1e-17 91.3 117 48.7
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 1.0e-16 90.5 58 67.2
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 1.4e-16 90.1 126 39.7
BcaC09g50389 Brassica carinata HOM05D015100 ORTHO05D005488 5.2e-16 88.2 63 79.4
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 1.1e-15 87.0 56 66.1
BolC9t53790H Brassica oleracea HOM05D015100 ORTHO05D005488 1.5e-15 86.7 63 77.8
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 2.6e-15 85.9 107 48.6
BolC1t01821H Brassica oleracea HOM05D015100 ORTHO05D005488 5.7e-15 84.7 63 76.2
BolC1t02550H Brassica oleracea HOM05D015100 ORTHO05D005488 5.7e-15 84.7 63 77.8
BolC9t55552H Brassica oleracea HOM05D015100 ORTHO05D005488 5.7e-15 84.7 63 76.2
BraA05t19187Z Brassica rapa HOM05D015100 ORTHO05D005488 1.3e-14 83.6 97 53.6
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 1.3e-14 83.6 104 47.1
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 1.1e-13 80.5 123 31.7
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 4.5e-12 75.1 111 43.2
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 5.9e-12 74.7 52 59.6
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 3.8e-11 72.0 44 72.7
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 8.5e-11 70.9 51 56.9
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 4.4e-07 58.5 39 66.7
C03p27210 Brassica napus HOM05D015100 ORTHO05D031876 7.5e-07 57.8 65 58.5
BolC3t15102H Brassica oleracea HOM05D015100 ORTHO05D031876 7.5e-07 57.8 65 58.5
BcaC01g05378 Brassica carinata HOM05D015100 ORTHO05D031876 2.2e-06 56.2 67 55.2
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 2.8e-06 55.8 73 38.4


User provided reference genes

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