Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22740 Brassica carinata HOM05D001667 ORTHO05D001508 7.4e-43 176.8 89 100.0
BcaC03g13870 Brassica carinata HOM05D001667 ORTHO05D001508 1.2e-37 159.5 89 91.0
C02p10750 Brassica napus HOM05D001667 ORTHO05D001508 1.2e-37 159.5 89 91.0
BolC2t07145H Brassica oleracea HOM05D001667 ORTHO05D001508 2.7e-37 158.3 89 89.9
Sp6g22970 Schrenkiella parvula HOM05D001667 ORTHO05D001508 2.3e-36 155.2 92 89.1
BraA02t05647Z Brassica rapa HOM05D001667 ORTHO05D001508 1.7e-34 149.1 89 86.5
A10p18530 Brassica napus HOM05D001667 ORTHO05D001508 2.8e-34 148.3 92 84.8
BraA10t43933Z Brassica rapa HOM05D001667 ORTHO05D001508 1.1e-33 146.4 92 83.7
A03p10650 Brassica napus HOM05D001667 ORTHO05D001508 2.0e-32 142.1 93 81.7
BraA03t10377Z Brassica rapa HOM05D001667 ORTHO05D001508 2.0e-32 142.1 93 81.7
BcaC04g19563 Brassica carinata HOM05D001667 ORTHO05D001508 3.5e-32 141.4 92 81.5
C09p54380 Brassica napus HOM05D001667 ORTHO05D001508 3.5e-32 141.4 92 81.5
BolC9t58306H Brassica oleracea HOM05D001667 ORTHO05D001508 3.5e-32 141.4 92 81.5
BcaC01g06595 Brassica carinata HOM05D001667 ORTHO05D001508 5.9e-32 140.6 93 81.7
BolC3t13699H Brassica oleracea HOM05D001667 ORTHO05D001508 5.9e-32 140.6 93 81.7
BcaB01g04719 Brassica carinata HOM05D001667 ORTHO05D001508 1.0e-31 139.8 93 83.9
C03p12260 Brassica napus HOM05D001667 ORTHO05D001508 2.2e-31 138.7 94 81.9
BcaB08g36443 Brassica carinata HOM05D001667 ORTHO05D001508 2.5e-30 135.2 84 83.3
CARHR191290 Cardamine hirsuta HOM05D001667 ORTHO05D001508 5.7e-27 124.0 93 78.5
Carub.0006s2001 Capsella rubella HOM05D001667 ORTHO05D001508 4.1e-25 117.9 92 72.8
BNapus_Darmor_BZH_scaffold_38p00780 Brassica napus HOM05D001667 ORTHO05D001508 2.1e-21 105.5 63 87.3
AT5G22270 Arabidopsis thaliana HOM05D001667 ORTHO05D001508 1.5e-19 99.4 92 64.1
AL6G33270 Arabidopsis lyrata HOM05D001667 ORTHO05D001508 2.0e-19 99.0 92 64.1
THA.LOC109116579 Tarenaya hassleriana HOM05D001667 ORTHO05D001508 8.3e-18 93.6 96 58.3
THA.LOC109116036 Tarenaya hassleriana HOM05D001667 ORTHO05D001508 5.4e-17 90.9 90 55.6
Gohir.D09G097200 Gossypium hirsutum HOM05D001667 ORTHO05D001508 9.2e-09 63.5 69 47.8
Gorai.006G113900 Gossypium raimondii HOM05D001667 ORTHO05D001508 9.2e-09 63.5 69 47.8
unitig_22.g5670 Utricularia gibba HOM05D001667 ORTHO05D001508 2.7e-08 62.0 78 41.0
COL.COLO4_22643 Corchorus olitorius HOM05D001667 ORTHO05D001508 5.9e-08 60.8 68 47.1
Medtr7g105730 Medicago truncatula HOM05D001667 ORTHO05D001508 1.0e-07 60.1 91 42.9
Thecc.09G277000 Theobroma cacao HOM05D001667 ORTHO05D001508 1.0e-07 60.1 69 46.4
Nn6g34775 Nelumbo nucifera HOM05D001667 ORTHO05D001508 2.3e-07 58.9 97 42.3
TPR.G24419 Trifolium pratense HOM05D001667 ORTHO05D001508 2.3e-07 58.9 91 41.8
Gohir.A09G097500 Gossypium hirsutum HOM05D001667 ORTHO05D001508 2.9e-07 58.5 69 44.9
BNapus_Darmor_BZH_scaffold_145p00050 Brassica napus HOM05D001667 ORTHO05D001508 3.9e-07 58.2 64 42.2
BraA01t04173Z Brassica rapa HOM05D001667 ORTHO05D001508 3.9e-07 58.2 64 42.2
Duzib150G0725 Durio zibethinus HOM05D001667 ORTHO05D001508 3.9e-07 58.2 69 44.9
Prupe.6G139000 Prunus persica HOM05D001667 ORTHO05D001508 3.9e-07 58.2 84 39.3
Zm00001eb083650 Zea mays HOM05D001667 ORTHO05D001508 3.9e-07 58.2 104 36.5
Ciclev10029587m.g Citrus clementina HOM05D001667 ORTHO05D001508 5.0e-07 57.8 71 40.8
Glyma.11G180600 Glycine max HOM05D001667 ORTHO05D001508 5.0e-07 57.8 73 43.8
Lalb_Chr01g0017921 Lupinus albus HOM05D001667 ORTHO05D001508 5.0e-07 57.8 89 42.7
Manes.09G049500 Manihot esculenta HOM05D001667 ORTHO05D001508 5.0e-07 57.8 90 38.9
Potri.009G161400 Populus trichocarpa HOM05D001667 ORTHO05D001508 5.0e-07 57.8 99 39.4
BcaB04g21126 Brassica carinata HOM05D001667 ORTHO05D001508 6.6e-07 57.4 77 39.0
BcaC09g48183 Brassica carinata HOM05D001667 ORTHO05D001508 6.6e-07 57.4 64 42.2
BolC1t05304H Brassica oleracea HOM05D001667 ORTHO05D001508 6.6e-07 57.4 64 42.2
CARHR206990 Cardamine hirsuta HOM05D001667 ORTHO05D001508 6.6e-07 57.4 44 52.3
Ca_09037_v3 Cicer arietinum L. HOM05D001667 ORTHO05D001508 6.6e-07 57.4 81 43.2
MELO3C009512.2 Cucumis melo HOM05D001667 ORTHO05D001508 6.6e-07 57.4 104 37.5
Thhalv10015029m.g Eutrema salsugineum HOM05D001667 ORTHO05D001508 6.6e-07 57.4 44 52.3
Gorai.009G083300 Gossypium raimondii HOM05D001667 ORTHO05D001508 6.6e-07 57.4 69 40.6
PSO801G0813 Papaver somniferum HOM05D001667 ORTHO05D001508 6.6e-07 57.4 77 41.6
Sabra09G0126100 Salix brachista HOM05D001667 ORTHO05D001508 6.6e-07 57.4 99 39.4
Sc20g0006570 Simmondsia chinensis HOM05D001667 ORTHO05D001508 6.6e-07 57.4 102 36.3
Carub.0003s1093 Capsella rubella HOM05D001667 ORTHO05D001508 8.6e-07 57.0 78 39.7
ClCG10G018560 Citrullus lanatus HOM05D001667 ORTHO05D001508 8.6e-07 57.0 104 36.5
Gohir.A05G078800 Gossypium hirsutum HOM05D001667 ORTHO05D001508 8.6e-07 57.0 49 49.0
MD03G1151000 Malus domestica HOM05D001667 ORTHO05D001508 8.6e-07 57.0 81 38.3
Aqoxy4G02696 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 1.1e-06 56.6 65 43.1
AL3G23160 Arabidopsis lyrata HOM05D001667 ORTHO05D001508 1.1e-06 56.6 75 41.3
Glyma.12G093000 Glycine max HOM05D001667 ORTHO05D001508 1.1e-06 56.6 65 46.2
HanXRQChr05g0130531 Helianthus annuus HOM05D001667 ORTHO05D001508 1.1e-06 56.6 92 39.1
Lj5g0002622 Lotus japonicus HOM05D001667 ORTHO05D001508 1.1e-06 56.6 42 54.8
Nn2g14254 Nelumbo nucifera HOM05D001590 ORTHO05D001508 1.1e-06 56.6 96 38.5
Os04g0415000 Oryza sativa ssp. japonica HOM05D001667 ORTHO05D001508 1.1e-06 56.6 107 33.6
unitig_27.g25121 Utricularia gibba HOM05D001667 ORTHO05D001508 1.1e-06 56.6 65 43.1
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 1.5e-06 56.2 71 42.3
AT5G06270 Arabidopsis thaliana HOM05D001667 ORTHO05D001508 1.5e-06 56.2 44 50.0
Sc21g0006930 Simmondsia chinensis HOM05D001667 ORTHO05D001508 1.5e-06 56.2 76 43.4
TPR.G8730 Trifolium pratense HOM05D001667 ORTHO05D001508 1.5e-06 56.2 41 53.7
CsaV3_3G037690 Cucumis sativus L. HOM05D001667 ORTHO05D001508 1.9e-06 55.8 104 36.5
Gohir.A07G111600 Gossypium hirsutum HOM05D001667 ORTHO05D001508 1.9e-06 55.8 45 53.3
Gohir.D05G081700 Gossypium hirsutum HOM05D001667 ORTHO05D001508 1.9e-06 55.8 69 40.6
Psat3g030520 Pisum sativum HOM05D001667 ORTHO05D001508 1.9e-06 55.8 85 41.2
Sp3g09840 Schrenkiella parvula HOM05D001667 ORTHO05D001508 1.9e-06 55.8 64 42.2
Sed0007684 Sechium edule HOM05D001667 ORTHO05D001508 1.9e-06 55.8 107 35.5
HPP92_027467 Vanilla planifolia HOM05D001667 ORTHO05D001508 1.9e-06 55.8 60 43.3
arahy.Tifrunner.gnm1.ann1.8QQ9KG Arachis hypogaea HOM05D001667 ORTHO05D001508 2.5e-06 55.5 44 50.0
EL10Ac7g16324 Beta vulgaris HOM05D001667 ORTHO05D001508 2.5e-06 55.5 97 39.2
Carub.0006s0516 Capsella rubella HOM05D001667 ORTHO05D001508 2.5e-06 55.5 43 51.2
CARHR086160 Cardamine hirsuta HOM05D001667 ORTHO05D001508 2.5e-06 55.5 39 56.4
Thhalv10021790m.g Eutrema salsugineum HOM05D001667 ORTHO05D001508 2.5e-06 55.5 64 42.2
SHI27881 Sapria himalayana HOM05D001667 ORTHO05D001508 2.5e-06 55.5 70 42.9
Sed0022322 Sechium edule HOM05D001667 ORTHO05D001508 2.5e-06 55.5 108 36.1
AL6G16300 Arabidopsis lyrata HOM05D001667 ORTHO05D001508 3.3e-06 55.1 43 51.2
AT3G11600 Arabidopsis thaliana HOM05D001667 ORTHO05D001508 3.3e-06 55.1 75 40.0
EL10Ac7g16821 Beta vulgaris HOM05D001667 ORTHO05D001508 3.3e-06 55.1 84 41.7
BcaB04g18652 Brassica carinata HOM05D001667 ORTHO05D001508 3.3e-06 55.1 64 42.2
Hma1.2p1_1178F.1_g264380 Hydrangea macrophylla HOM05D001667 ORTHO05D001508 3.3e-06 55.1 79 36.7
MBI17_g16778_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 3.3e-06 55.1 97 37.1
Oeu009064.1 Olea europaea HOM05D001667 ORTHO05D001508 3.3e-06 55.1 72 41.7
PGR102G1406 Punica granatum HOM05D001667 ORTHO05D001508 3.3e-06 55.1 57 43.9
Hund18788 Selenicereus undatus HOM05D001667 ORTHO05D001508 3.3e-06 55.1 37 59.5
Sc12g0004750 Simmondsia chinensis HOM05D001667 ORTHO05D001508 3.3e-06 55.1 63 42.9
THA.LOC104816609 Tarenaya hassleriana HOM05D001667 ORTHO05D001508 3.3e-06 55.1 71 39.4
Aa31sc52G70 Aethionema arabicum HOM05D001667 ORTHO05D001508 4.3e-06 54.7 43 48.8
CiPaw.13G132200 Carya illinoinensis HOM05D001667 ORTHO05D001508 4.3e-06 54.7 45 44.4
DCAR_009174 Daucus carota HOM05D001667 ORTHO05D001508 4.3e-06 54.7 72 36.1
FAN09G1589 Fragaria x ananassa HOM05D001667 ORTHO05D001508 4.3e-06 54.7 65 40.0
Medtr1g058120 Medicago truncatula HOM05D001667 ORTHO05D001508 4.3e-06 54.7 45 51.1
Oeu043480.1 Olea europaea HOM05D001667 ORTHO05D001508 4.3e-06 54.7 77 41.6
Oeu048851.1 Olea europaea HOM05D001667 ORTHO05D001508 4.3e-06 54.7 70 45.7
Sp6g36590 Schrenkiella parvula HOM05D001667 ORTHO05D001508 4.3e-06 54.7 44 50.0
Hund03868 Selenicereus undatus HOM05D001667 ORTHO05D001508 4.3e-06 54.7 41 51.2
unitig_699.g19452 Utricularia gibba HOM05D001667 ORTHO05D001508 4.3e-06 54.7 65 41.5
HPP92_009785 Vanilla planifolia HOM05D001667 ORTHO05D001508 4.3e-06 54.7 86 34.9
Haze_23335 Corylus avellana HOM05D001667 ORTHO05D001508 5.6e-06 54.3 65 43.1
FvH4_6g19800 Fragaria vesca HOM05D001667 ORTHO05D001508 5.6e-06 54.3 65 40.0
FAN02G0800 Fragaria x ananassa HOM05D001667 ORTHO05D001508 5.6e-06 54.3 65 40.0
FAN05G2851 Fragaria x ananassa HOM05D001667 ORTHO05D001508 5.6e-06 54.3 65 40.0
FAN14G5362 Fragaria x ananassa HOM05D001667 ORTHO05D001508 5.6e-06 54.3 65 40.0
Nitab4.5_0002706g0040 Nicotiana tabacum HOM05D001667 ORTHO05D001508 5.6e-06 54.3 110 31.8
RcHm_v2.0_Chr3g0475171 Rosa chinensis HOM05D001667 ORTHO05D001508 5.6e-06 54.3 65 40.0
Sabra06G0158900 Salix brachista HOM05D001667 ORTHO05D001508 5.6e-06 54.3 63 42.9
Sed0009866 Sechium edule HOM05D001667 ORTHO05D001508 5.6e-06 54.3 103 36.9
THA.LOC104826812 Tarenaya hassleriana HOM05D001667 ORTHO05D001508 5.6e-06 54.3 76 39.5
TPR.G4507 Trifolium pratense HOM05D001667 ORTHO05D001508 5.6e-06 54.3 64 43.8
arahy.Tifrunner.gnm1.ann1.Q3K67F Arachis hypogaea HOM05D001667 ORTHO05D001508 7.3e-06 53.9 79 36.7
CiPaw.13G132300 Carya illinoinensis HOM05D001667 ORTHO05D001508 7.3e-06 53.9 86 37.2
Ca_11725_v3 Cicer arietinum L. HOM05D001667 ORTHO05D001508 7.3e-06 53.9 39 53.8
Migut.L01911 Erythranthe guttata HOM05D001667 ORTHO05D001508 7.3e-06 53.9 102 32.4
Eucgr.A02613 Eucalyptus grandis HOM05D001667 ORTHO05D001508 7.3e-06 53.9 67 44.8
Lj3g0000291 Lotus japonicus HOM05D001667 ORTHO05D001508 7.3e-06 53.9 72 44.4
Medtr2g086870 Medicago truncatula HOM05D001667 ORTHO05D001508 7.3e-06 53.9 72 41.7
Os08g0102250 Oryza sativa ssp. japonica HOM05D001667 ORTHO05D001508 7.3e-06 53.9 57 47.4
Psat6g082040 Pisum sativum HOM05D001667 ORTHO05D001508 7.3e-06 53.9 42 47.6
TWI74G1322 Tripterygium wilfordii HOM05D001667 ORTHO05D001508 7.3e-06 53.9 101 35.6
Ah.08g223650 Amaranthus hybridus HOM05D001667 ORTHO05D001508 9.5e-06 53.5 56 50.0
Ah.15g090550 Amaranthus hybridus HOM05D001667 ORTHO05D001508 9.5e-06 53.5 81 40.7
arahy.Tifrunner.gnm1.ann1.DY9K7Z Arachis hypogaea HOM05D001667 ORTHO05D001508 9.5e-06 53.5 45 51.1
BcaB05g21676 Brassica carinata HOM05D001667 ORTHO05D001508 9.5e-06 53.5 44 47.7
Ciclev10013147m.g Citrus clementina HOM05D001667 ORTHO05D001508 9.5e-06 53.5 73 39.7
Migut.D02403 Erythranthe guttata HOM05D001667 ORTHO05D001508 9.5e-06 53.5 68 44.1
Migut.D02419 Erythranthe guttata HOM05D001667 ORTHO05D001508 9.5e-06 53.5 68 44.1
FAN05G3938 Fragaria x ananassa HOM05D001667 ORTHO05D001508 9.5e-06 53.5 97 38.1
Gohir.A04G060300 Gossypium hirsutum HOM05D001667 ORTHO05D001508 9.5e-06 53.5 51 45.1
Gohir.D04G095700 Gossypium hirsutum HOM05D001667 ORTHO05D001508 9.5e-06 53.5 97 35.1
Gorai.009G398500 Gossypium raimondii HOM05D001667 ORTHO05D001508 9.5e-06 53.5 97 35.1
Manes.08G030700 Manihot esculenta HOM05D001667 ORTHO05D001508 9.5e-06 53.5 63 44.4
Os04g0684600 Oryza sativa ssp. japonica HOM05D001667 ORTHO05D001508 9.5e-06 53.5 57 49.1
Potri.004G200300 Populus trichocarpa HOM05D001667 ORTHO05D001508 9.5e-06 53.5 84 38.1
Prupe.7G099000 Prunus persica HOM05D001667 ORTHO05D001508 9.5e-06 53.5 68 41.2
Zm00001eb065690 Zea mays HOM05D001667 ORTHO05D001508 9.5e-06 53.5 67 47.8
Zm00001eb146970 Zea mays HOM05D001667 ORTHO05D001508 9.5e-06 53.5 43 53.5
Zm00001eb288880 Zea mays HOM05D001667 ORTHO05D001508 9.5e-06 53.5 53 52.8


User provided reference genes

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