Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22729 Brassica carinata HOM05D004622 ORTHO05D005431 3.0e-103 378.6 207 100.0
BcaC03g13879 Brassica carinata HOM05D004622 ORTHO05D005431 2.3e-87 325.9 207 90.3
BolC2t07154H Brassica oleracea HOM05D004622 ORTHO05D005431 2.3e-87 325.9 207 90.3
BNapus_Darmor_BZH_scaffold_38p00690 Brassica napus HOM05D004622 ORTHO05D005431 1.3e-85 320.1 207 89.4
BraA02t05656Z Brassica rapa HOM05D004622 ORTHO05D005431 1.3e-85 320.1 207 89.4
Thhalv10014710m.g Eutrema salsugineum HOM05D004622 ORTHO05D005431 4.7e-80 301.6 186 82.8
Sp6g22860 Schrenkiella parvula HOM05D004622 ORTHO05D005431 4.5e-75 285.0 191 79.1
A10p18420 Brassica napus HOM05D004622 ORTHO05D005431 2.7e-72 275.8 187 78.6
BraA10t43924Z Brassica rapa HOM05D004622 ORTHO05D005431 2.7e-72 275.8 187 78.6
AL6G33410 Arabidopsis lyrata HOM05D004622 ORTHO05D005431 5.7e-70 268.1 188 76.1
C09p54200 Brassica napus HOM05D004622 ORTHO05D005431 9.1e-68 260.8 187 75.4
BolC9t58294H Brassica oleracea HOM05D004622 ORTHO05D005431 9.1e-68 260.8 187 75.4
CARHR191140 Cardamine hirsuta HOM05D004622 ORTHO05D005431 4.5e-67 258.5 193 78.2
BcaB08g36435 Brassica carinata HOM05D004622 ORTHO05D005431 1.4e-63 246.9 183 75.4
AT5G22390 Arabidopsis thaliana HOM05D004622 ORTHO05D005431 6.7e-63 244.6 188 71.8
Carub.0006s2014 Capsella rubella HOM05D004622 ORTHO05D005431 3.1e-60 235.7 194 70.6
BcaC04g19568 Brassica carinata HOM05D004622 ORTHO05D005431 1.1e-44 184.1 176 62.5
Aa31LG1G13150 Aethionema arabicum HOM05D004622 ORTHO05D005431 3.4e-38 162.5 197 51.8
THA.LOC104799551 Tarenaya hassleriana HOM05D004622 ORTHO05D005431 2.1e-32 143.3 203 46.8
Manes.04G003000 Manihot esculenta HOM05D004622 ORTHO05D005431 3.3e-17 92.8 265 32.5
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 2.1e-16 90.1 223 38.6
Gohir.A07G110600 Gossypium hirsutum HOM05D004622 ORTHO05D005431 2.1e-16 90.1 233 36.1
HPP92_006359 Vanilla planifolia HOM05D004622 ORTHO05D005431 2.1e-16 90.1 201 36.8
Gohir.D07G114300 Gossypium hirsutum HOM05D004622 ORTHO05D005431 2.8e-16 89.7 233 35.6
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 6.2e-16 88.6 206 38.3
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 8.1e-16 88.2 221 38.5
Cfa010005 Carpinus fangiana HOM05D004622 ORTHO05D005431 1.1e-15 87.8 235 34.5
Gorai.001G122600 Gossypium raimondii HOM05D004622 ORTHO05D005431 1.1e-15 87.8 230 35.7
CSS0048557 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 1.4e-15 87.4 234 34.2
Glyma.11G182500 Glycine max HOM05D004622 ORTHO05D005431 1.2e-14 84.3 214 35.5
Haze_23364 Corylus avellana HOM05D004622 ORTHO05D005431 1.5e-14 84.0 237 35.4
Lalb_Chr03g0028141 Lupinus albus HOM05D004622 ORTHO05D005431 1.5e-14 84.0 241 34.9
SalBow6G5234 Salvia bowleyana HOM05D004622 ORTHO05D005431 2.0e-14 83.6 213 32.4
ClCG02G022240 Citrullus lanatus HOM05D004622 ORTHO05D005431 2.6e-14 83.2 233 32.6
Medtr2g086590 Medicago truncatula HOM05D004622 ORTHO05D005431 2.6e-14 83.2 236 34.7
TAR636G1327 Trochodendron aralioides HOM05D004622 ORTHO05D005431 2.6e-14 83.2 262 31.7
arahy.Tifrunner.gnm1.ann1.72VZ3I Arachis hypogaea HOM05D004622 ORTHO05D005431 4.4e-14 82.4 236 33.5
ClCG01G012170 Citrullus lanatus HOM05D004622 ORTHO05D005431 7.6e-14 81.6 236 36.0
Glyma.12G090100 Glycine max HOM05D004622 ORTHO05D005431 7.6e-14 81.6 197 38.1
Phvul.005G123200 Phaseolus vulgaris HOM05D004622 ORTHO05D005431 9.9e-14 81.3 189 40.7
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 9.9e-14 81.3 250 30.4
Prupe.6G132300 Prunus persica HOM05D004622 ORTHO05D005431 1.3e-13 80.9 265 32.5
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 1.7e-13 80.5 242 31.4
Lj3g0018609 Lotus japonicus HOM05D004622 ORTHO05D005431 1.7e-13 80.5 196 36.2
Cpa.g.sc195.5 Carica papaya HOM05D004622 ORTHO05D005431 3.8e-13 79.3 238 31.9
VMungo1080G1565 Vigna mungo HOM05D004622 ORTHO05D005431 4.9e-13 79.0 184 40.2
CANSAT54G2229 Cannabis sativa HOM05D004622 ORTHO05D005431 1.4e-12 77.4 273 31.5
QL01p012122 Quercus lobata HOM05D004622 ORTHO05D005431 1.4e-12 77.4 252 32.5
HPP92_009743 Vanilla planifolia HOM05D004622 ORTHO05D005431 1.4e-12 77.4 199 32.7
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 3.2e-12 76.3 133 46.6
Rhsim01G0204900 Rhododendron simsii HOM05D004622 ORTHO05D005431 3.2e-12 76.3 248 31.9
Dinv22834 Davidia involucrata HOM05D000892 ORTHO05D000750 4.2e-12 75.9 140 42.1
Duzib168G0112 Durio zibethinus HOM05D004622 ORTHO05D005431 4.2e-12 75.9 264 29.5
MSTRG.18765 Avicennia marina HOM05D004622 ORTHO05D005431 5.4e-12 75.5 185 33.5
Thecc.09G281500 Theobroma cacao HOM05D004622 ORTHO05D005431 5.4e-12 75.5 263 31.9
Actinidia07251 Actinidia chinensis HOM05D000892 ORTHO05D005431 7.1e-12 75.1 236 30.9
CiPaw.14G099300 Carya illinoinensis HOM05D004622 ORTHO05D005431 7.1e-12 75.1 261 31.4
Gohir.A09G096001 Gossypium hirsutum HOM05D004622 ORTHO05D005431 7.1e-12 75.1 230 33.9
Gohir.D09G095666 Gossypium hirsutum HOM05D004622 ORTHO05D005431 7.1e-12 75.1 223 32.7
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 1.2e-11 74.3 266 30.1
MELO3C014501.2 Cucumis melo HOM05D004622 ORTHO05D005431 1.6e-11 73.9 143 38.5
DCAR_010339 Daucus carota HOM05D004622 ORTHO05D005431 1.6e-11 73.9 239 31.8
MD11G1166300 Malus domestica HOM05D004622 ORTHO05D005431 1.6e-11 73.9 279 30.8
TWI79G1499 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 1.6e-11 73.9 258 32.2
EL10Ac7g15833 Beta vulgaris HOM05D004622 ORTHO05D005431 2.1e-11 73.6 133 42.1
FAN11G1623 Fragaria x ananassa HOM05D004622 ORTHO05D005431 2.1e-11 73.6 262 32.8
MD03G1147600 Malus domestica HOM05D004622 ORTHO05D005431 2.1e-11 73.6 281 30.2
Cpa.g.sc195.4 Carica papaya HOM05D004622 ORTHO05D005431 3.5e-11 72.8 252 30.2
CsaV3_1G015000 Cucumis sativus L. HOM05D004622 ORTHO05D005431 4.6e-11 72.4 235 32.3
CsaV3_1G015910 Cucumis sativus L. HOM05D004622 ORTHO05D005431 4.6e-11 72.4 235 32.3
Nn2g14192 Nelumbo nucifera HOM05D004622 ORTHO05D005431 4.6e-11 72.4 272 29.8
Oeu035435.1 Olea europaea HOM05D004622 ORTHO05D005431 4.6e-11 72.4 137 37.2
CsaV3_6G038370 Cucumis sativus L. HOM05D004622 ORTHO05D005431 6.0e-11 72.0 120 42.5
Oeu034007.1 Olea europaea HOM05D004622 ORTHO05D005431 7.8e-11 71.6 163 32.5
TWI75G1018 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 1.0e-10 71.2 178 35.4
FvH4_3g25120 Fragaria vesca HOM05D004622 ORTHO05D005431 1.3e-10 70.9 262 32.4
Potri.009G162800 Populus trichocarpa HOM05D004622 ORTHO05D005431 1.7e-10 70.5 251 31.5
Sabra09G0127000 Salix brachista HOM05D004622 ORTHO05D005431 1.7e-10 70.5 253 30.4
MELO3C004685.2 Cucumis melo HOM05D004622 ORTHO05D005431 3.0e-10 69.7 236 31.8
TAR633G0983 Trochodendron aralioides HOM05D004622 ORTHO05D005431 3.9e-10 69.3 274 31.0
CiPaw.13G134900 Carya illinoinensis HOM05D004622 ORTHO05D005431 6.6e-10 68.6 206 30.6
MBI17_g08325_MAGBIO Magnolia biondii HOM05D004622 ORTHO05D005431 6.6e-10 68.6 266 31.2
TPR.G4535 Trifolium pratense HOM05D004622 ORTHO05D005431 6.6e-10 68.6 233 31.8
CDE04G1878 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 1.1e-09 67.8 131 37.4
Migut.N02485 Erythranthe guttata HOM05D004622 ORTHO05D005431 1.1e-09 67.8 269 29.0
TWI31G0739 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 1.1e-09 67.8 253 30.0
RcHm_v2.0_Chr5g0045661 Rosa chinensis HOM05D004622 ORTHO05D005431 1.5e-09 67.4 263 30.0
RcHm_v2.0_Chr5g0046341 Rosa chinensis HOM05D004622 ORTHO05D005431 1.5e-09 67.4 263 30.0
Sed0001344 Sechium edule HOM05D004622 ORTHO05D005431 1.5e-09 67.4 187 35.3
Psat5g258080 Pisum sativum HOM05D004622 ORTHO05D005431 1.9e-09 67.0 202 33.2
PSO801G0264 Papaver somniferum HOM05D004622 ORTHO05D005431 4.3e-09 65.9 115 37.4
CSS0039489 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 7.3e-09 65.1 255 32.2
Ciclev10028879m.g Citrus clementina HOM05D004622 ORTHO05D005431 7.3e-09 65.1 266 29.7
Lsat_1_v5_gn_2_59400 Lactuca sativa HOM05D004622 ORTHO05D005431 9.6e-09 64.7 207 29.5
GSVIVG01036110001 Vitis vinifera HOM05D004622 ORTHO05D005431 9.6e-09 64.7 134 37.3
MSTRG.21036 Avicennia marina HOM05D004622 ORTHO05D005431 1.2e-08 64.3 128 33.6
SGA_v2.0_scaffold22G09855 Striga asiatica HOM05D004622 ORTHO05D005431 1.2e-08 64.3 199 31.2
Atru.chr3.3214 Acer truncatum HOM05D004622 ORTHO05D005431 1.6e-08 63.9 120 40.0
Migut.D02437 Erythranthe guttata HOM05D004622 ORTHO05D005431 1.6e-08 63.9 238 29.8
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 2.1e-08 63.5 137 35.0
Manes.11G162600 Manihot esculenta HOM05D004622 ORTHO05D005431 2.1e-08 63.5 129 38.0
Eucgr.B03842 Eucalyptus grandis HOM05D004622 ORTHO05D005431 2.8e-08 63.2 214 29.0
HanXRQChr11g0324161 Helianthus annuus HOM05D004622 ORTHO05D005431 4.7e-08 62.4 124 36.3
Potri.004G201500 Populus trichocarpa HOM05D004622 ORTHO05D005431 4.7e-08 62.4 115 40.9
Lj2C965T2 Lonicera japonica HOM05D004622 ORTHO05D005431 6.2e-08 62.0 266 27.4
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 8.1e-08 61.6 263 30.0
PGSC0003DMG400026354 Solanum tuberosum HOM05D004622 ORTHO05D005431 8.1e-08 61.6 155 32.9
DCAR_012203 Daucus carota HOM05D004622 ORTHO05D005431 1.1e-07 61.2 245 30.6
Peaxi162Scf00040g00012 Petunia axillaris HOM05D004622 ORTHO05D005431 1.1e-07 61.2 151 32.5
Zm00001eb242780 Zea mays HOM05D004622 ORTHO05D005431 1.1e-07 61.2 116 40.5
Nitab4.5_0001216g0120 Nicotiana tabacum HOM05D004622 ORTHO05D005431 1.4e-07 60.8 135 34.8
Actinidia35466 Actinidia chinensis HOM05D004622 ORTHO05D005431 3.1e-07 59.7 126 36.5
PGSC0003DMG400005882 Solanum tuberosum HOM05D004622 ORTHO05D005431 3.1e-07 59.7 155 33.5
Solyc06g074270.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 4.0e-07 59.3 155 32.9
Sopen06g030720 Solanum pennellii HOM05D004622 ORTHO05D005431 4.0e-07 59.3 155 32.9
unitig_699.g19154 Utricularia gibba HOM05D004622 ORTHO05D005431 5.3e-07 58.9 128 34.4
MSTRG.24751 Avicennia marina HOM05D001105 ORTHO05D001870 6.9e-07 58.5 155 34.8
Nitab4.5_0003661g0010 Nicotiana tabacum HOM05D004622 ORTHO05D005431 9.0e-07 58.2 136 34.6
Nitab4.5_0000755g0020 Nicotiana tabacum HOM05D004622 ORTHO05D005431 1.2e-06 57.8 139 31.7
Os12g0155100 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 2.0e-06 57.0 223 30.0
Actinidia24220 Actinidia chinensis HOM05D004622 ORTHO05D005431 2.6e-06 56.6 202 32.2
Sc21g0007040 Simmondsia chinensis HOM05D004622 ORTHO05D005431 2.6e-06 56.6 66 47.0
Solyc11g068530.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 2.6e-06 56.6 143 32.9
Aqoxy2G01109 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 5.8e-06 55.5 157 35.7


User provided reference genes

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