Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 1.0e-93 346.7 172 100.0
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 1.7e-80 302.8 173 87.3
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 3.9e-80 301.6 173 87.9
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 4.7e-78 294.7 173 85.5
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 1.8e-77 292.7 173 83.8
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 2.6e-76 288.9 173 83.8
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 2.9e-75 285.4 173 81.5
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.4e-74 283.1 173 82.1
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 5.4e-74 281.2 173 79.8
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 1.6e-73 279.6 171 81.9
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 1.3e-72 276.6 173 79.8
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 1.5e-71 273.1 173 78.6
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 1.4e-66 256.5 154 83.8
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 2.4e-66 255.8 173 73.4
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 1.8e-45 186.4 174 57.5
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 2.4e-45 186.0 175 59.4
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 9.0e-45 184.1 174 58.0
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 3.0e-32 142.5 174 47.7
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 3.9e-32 142.1 179 45.8
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 4.3e-31 138.7 172 44.8
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 2.8e-30 136.0 178 46.1
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 2.8e-30 136.0 180 45.0
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 4.8e-30 135.2 169 45.6
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 6.3e-30 134.8 180 43.9
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 8.2e-30 134.4 180 45.0
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 1.8e-29 133.3 169 45.6
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 2.4e-29 132.9 173 43.9
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 4.1e-29 132.1 177 44.6
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 5.3e-29 131.7 169 44.4
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 6.9e-29 131.3 178 44.4
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.2e-28 130.6 169 45.6
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 1.5e-28 130.2 180 42.2
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 2.0e-28 129.8 169 45.6
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.0e-28 129.8 169 45.6
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 2.0e-28 129.8 166 46.4
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 3.4e-28 129.0 170 45.9
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 4.5e-28 128.6 180 44.4
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 4.5e-28 128.6 171 46.8
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 5.9e-28 128.3 173 45.7
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 1.0e-27 127.5 180 44.4
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.0e-27 127.5 169 45.0
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 1.0e-27 127.5 165 45.5
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.0e-27 127.5 164 44.5
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 1.3e-27 127.1 173 42.8
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 1.3e-27 127.1 173 42.8
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 1.3e-27 127.1 174 47.1
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 1.3e-27 127.1 172 45.3
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 1.7e-27 126.7 176 44.3
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 1.7e-27 126.7 167 44.9
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 2.2e-27 126.3 172 43.6
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 2.9e-27 125.9 171 43.3
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 3.8e-27 125.6 167 45.5
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 6.5e-27 124.8 175 45.7
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 1.9e-26 123.2 175 44.6
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 1.9e-26 123.2 181 45.9
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 2.5e-26 122.9 175 43.4
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 3.2e-26 122.5 175 44.0
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 3.2e-26 122.5 178 43.3
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 3.2e-26 122.5 165 44.8
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 4.2e-26 122.1 163 43.6
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 9.3e-26 120.9 170 44.1
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 1.2e-25 120.6 170 44.7
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.6e-25 120.2 177 42.9
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 2.1e-25 119.8 181 40.9
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 2.1e-25 119.8 179 45.3
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 2.7e-25 119.4 178 41.0
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 2.7e-25 119.4 170 43.5
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 3.6e-25 119.0 171 44.4
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 4.6e-25 118.6 178 42.1
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 7.9e-25 117.9 172 42.4
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 1.0e-24 117.5 171 43.9
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 1.0e-24 117.5 153 47.1
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 1.3e-24 117.1 167 44.9
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 1.3e-24 117.1 180 41.1
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 1.8e-24 116.7 169 43.2
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 1.8e-24 116.7 177 43.5
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 2.3e-24 116.3 188 39.9
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 3.0e-24 115.9 176 43.8
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 3.0e-24 115.9 196 36.7
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 3.0e-24 115.9 170 44.1
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 5.1e-24 115.2 168 40.5
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 6.7e-24 114.8 168 40.5
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 6.7e-24 114.8 168 39.9
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 1.5e-23 113.6 169 39.6
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 1.5e-23 113.6 183 39.3
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 1.5e-23 113.6 183 40.4
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 1.9e-23 113.2 165 43.0
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 1.9e-23 113.2 175 42.9
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.9e-23 113.2 179 39.7
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 4.3e-23 112.1 177 41.2
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 4.3e-23 112.1 187 39.6
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 5.7e-23 111.7 168 44.0
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 5.7e-23 111.7 176 40.9
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 7.4e-23 111.3 180 41.7
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 7.4e-23 111.3 179 41.9
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 9.7e-23 110.9 170 40.6
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 9.7e-23 110.9 177 40.7
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 2.8e-22 109.4 183 41.5
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 3.7e-22 109.0 183 37.7
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 8.2e-22 107.8 171 40.9
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 1.1e-21 107.5 178 42.1
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 1.1e-21 107.5 179 39.7
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 1.4e-21 107.1 180 41.1
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 1.4e-21 107.1 182 38.5
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 1.4e-21 107.1 179 39.1
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 1.8e-21 106.7 176 42.0
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 1.8e-21 106.7 169 40.8
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 4.1e-21 105.5 172 38.4
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 5.3e-21 105.1 168 38.1
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 5.3e-21 105.1 181 38.7
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 6.9e-21 104.8 174 41.4
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 6.9e-21 104.8 183 36.6
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 2.6e-20 102.8 133 45.9
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 3.4e-20 102.4 174 41.4
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 4.5e-20 102.1 174 40.8
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 5.9e-20 101.7 169 40.2
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 5.9e-20 101.7 174 39.7
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 5.9e-20 101.7 174 40.2
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 1.7e-19 100.1 174 40.2
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 2.9e-19 99.4 166 38.0
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 8.5e-19 97.8 174 39.7
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 8.5e-19 97.8 174 39.7
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 1.9e-18 96.7 174 40.8
A10p18400 Brassica napus HOM05D005110 ORTHO05D006074 2.5e-18 96.3 65 76.9
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 2.5e-18 96.3 179 36.9
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 5.5e-18 95.1 174 40.8
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 2.1e-17 93.2 174 38.5
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 2.7e-17 92.8 159 37.7
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 7.9e-17 91.3 189 36.5
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 1.0e-16 90.9 173 40.5
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 1.8e-16 90.1 187 35.8
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 3.9e-16 89.0 133 44.4
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 5.1e-16 88.6 120 45.0
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 1.1e-15 87.4 176 36.9
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 2.6e-15 86.3 107 41.1
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 1.7e-14 83.6 126 45.2
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 7.7e-12 74.7 203 31.0
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 2.9e-11 72.8 188 34.6
BraA10t43921Z Brassica rapa HOM05D005110 ORTHO05D006074 3.8e-11 72.4 52 73.1
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 6.5e-11 71.6 108 38.9
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 8.5e-11 71.2 117 37.6
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 1.4e-10 70.5 92 45.7
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 8.8e-08 61.2 120 31.7
Os02g0535300 Oryza sativa ssp. japonica HOM05D005110 ORTHO05D006074 3.7e-06 55.8 173 31.8


User provided reference genes

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