Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22687 Brassica carinata HOM05D006347 ORTHO05D007835 7.0e-301 1036.6 546 100.0
BcaC03g13920 Brassica carinata HOM05D006347 ORTHO05D007835 2.8e-233 812.0 546 81.5
BNapus_Darmor_BZH_scaffold_38p00360 Brassica napus HOM05D006347 ORTHO05D007835 5.5e-229 797.7 548 80.7
BolC2t07198H Brassica oleracea HOM05D006347 ORTHO05D007835 1.3e-227 793.1 553 80.3
Thhalv10013199m.g Eutrema salsugineum HOM05D006347 ORTHO05D007835 3.0e-227 792.0 543 78.5
BraA02t05690Z Brassica rapa HOM05D006347 ORTHO05D007835 4.8e-225 784.6 551 80.2
Sp6g22600 Schrenkiella parvula HOM05D006347 ORTHO05D007835 1.1e-224 783.5 506 80.2
C02p11300 Brassica napus HOM05D006347 ORTHO05D007835 3.1e-224 781.9 548 79.9
AL6G33930 Arabidopsis lyrata HOM05D006347 ORTHO05D007835 2.0e-215 752.7 504 77.6
CARHR190750 Cardamine hirsuta HOM05D006347 ORTHO05D007835 3.4e-215 751.9 542 74.2
Carub.0006s2054 Capsella rubella HOM05D006347 ORTHO05D007835 1.0e-214 750.4 542 74.4
AT5G22820 Arabidopsis thaliana HOM05D006347 ORTHO05D007835 2.0e-207 726.1 501 76.2
Aa31LG1G12890 Aethionema arabicum HOM05D006347 ORTHO05D007835 4.2e-181 638.6 552 63.9
THA.LOC104810888 Tarenaya hassleriana HOM05D006347 ORTHO05D007835 1.4e-171 607.1 502 63.7
QL01p014117 Quercus lobata HOM05D006347 ORTHO05D007835 4.6e-143 512.3 527 51.8
CiPaw.14G105000 Carya illinoinensis HOM05D006347 ORTHO05D007835 5.6e-141 505.4 529 52.4
Thecc.09G294500 Theobroma cacao HOM05D006347 ORTHO05D007835 3.6e-140 502.7 508 54.5
Dinv29404 Davidia involucrata HOM05D006347 ORTHO05D007835 4.7e-140 502.3 516 53.3
GSVIVG01031423001 Vitis vinifera HOM05D006347 ORTHO05D007835 1.3e-137 494.2 510 51.6
Prupe.6G116300 Prunus persica HOM05D006347 ORTHO05D007835 1.9e-136 490.3 528 51.3
Sabra09G0119700 Salix brachista HOM05D006347 ORTHO05D007835 1.2e-135 487.6 539 51.0
Duzib168G1158 Durio zibethinus HOM05D006347 ORTHO05D007835 4.6e-135 485.7 525 51.6
Gorai.001G118600 Gossypium raimondii HOM05D006347 ORTHO05D007835 6.6e-134 481.9 496 54.2
arahy.Tifrunner.gnm1.ann1.PRK8FW Arachis hypogaea HOM05D006347 ORTHO05D007835 1.1e-133 481.1 525 51.2
Gohir.A07G106500 Gossypium hirsutum HOM05D006347 ORTHO05D007835 4.3e-133 479.2 496 54.2
Ciclev10028160m.g Citrus clementina HOM05D006347 ORTHO05D007835 5.6e-133 478.8 503 51.5
Gohir.D07G110400 Gossypium hirsutum HOM05D006347 ORTHO05D007835 1.4e-131 474.2 528 51.9
Potri.009G151100 Populus trichocarpa HOM05D006347 ORTHO05D007835 2.4e-131 473.4 545 51.0
Glyma.13G320700 Glycine max HOM05D006347 ORTHO05D007835 3.1e-131 473.0 520 49.2
Hma1.2p1_0884F.1_g232450 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 1.5e-130 470.7 501 51.9
MD11G1153600 Malus domestica HOM05D006347 ORTHO05D007835 5.8e-130 468.8 522 49.8
Manes.04G010900 Manihot esculenta HOM05D006347 ORTHO05D007835 2.2e-129 466.8 520 49.8
Atru.chr3.3422 Acer truncatum HOM05D006347 ORTHO05D007835 8.4e-129 464.9 489 52.8
FvH4_3g29990 Fragaria vesca HOM05D006347 ORTHO05D007835 8.4e-129 464.9 501 51.9
RcHm_v2.0_Chr5g0055941 Rosa chinensis HOM05D006347 ORTHO05D007835 9.3e-128 461.5 523 49.3
VMungo1080G1358 Vigna mungo HOM05D006347 ORTHO05D007835 1.2e-127 461.1 516 49.6
FAN11G3746 Fragaria x ananassa HOM05D006347 ORTHO05D007835 2.1e-127 460.3 507 51.5
Eucgr.J00411 Eucalyptus grandis HOM05D006347 ORTHO05D007835 2.7e-127 459.9 531 48.4
FAN21G3835 Fragaria x ananassa HOM05D006347 ORTHO05D007835 2.7e-127 459.9 541 49.0
Lalb_Chr22g0350521 Lupinus albus HOM05D006347 ORTHO05D007835 3.0e-126 456.4 503 50.5
FAN25G1668 Fragaria x ananassa HOM05D006347 ORTHO05D007835 5.1e-126 455.7 541 49.2
Medtr2g084580 Medicago truncatula HOM05D006347 ORTHO05D007835 3.3e-125 453.0 503 49.9
Cc01_g10020 Coffea canephora HOM05D006347 ORTHO05D007835 7.3e-125 451.8 501 49.7
TPR.G32394 Trifolium pratense HOM05D006347 ORTHO05D007835 2.1e-124 450.3 518 48.3
Sc12g0003850 Simmondsia chinensis HOM05D006347 ORTHO05D007835 2.8e-124 449.9 518 47.9
Psat5g253920 Pisum sativum HOM05D006347 ORTHO05D007835 1.4e-123 447.6 530 48.1
CsaV3_6G014560 Cucumis sativus L. HOM05D006347 ORTHO05D007835 2.0e-122 443.7 540 46.5
Lj3g0008152 Lotus japonicus HOM05D006347 ORTHO05D007835 2.6e-122 443.4 544 48.0
Lsat_1_v5_gn_2_96801 Lactuca sativa HOM05D006347 ORTHO05D007835 3.8e-121 439.5 532 47.7
DCAR_015490 Daucus carota HOM05D006347 ORTHO05D007835 4.9e-121 439.1 537 46.9
Sed0011208 Sechium edule HOM05D006347 ORTHO05D007835 6.0e-119 432.2 527 46.3
MELO3C021469.2 Cucumis melo HOM05D006347 ORTHO05D007835 1.3e-118 431.0 559 45.3
TWI31G1233 Tripterygium wilfordii HOM05D006347 ORTHO05D007835 1.3e-118 431.0 530 47.4
Nn2g13927 Nelumbo nucifera HOM05D006347 ORTHO05D007835 3.9e-118 429.5 465 51.8
Actinidia24168 Actinidia chinensis HOM05D006347 ORTHO05D007835 3.3e-117 426.4 485 50.7
Cfa021537 Carpinus fangiana HOM05D006347 ORTHO05D007835 3.3e-117 426.4 538 47.0
Phvul.005G128700 Phaseolus vulgaris HOM05D006347 ORTHO05D007835 6.2e-116 422.2 399 54.9
arahy.Tifrunner.gnm1.ann1.9T0HEQ Arachis hypogaea HOM05D006347 ORTHO05D007835 1.8e-115 420.6 580 44.1
MSTRG.18715 Avicennia marina HOM05D006347 ORTHO05D007835 3.1e-115 419.9 507 47.5
AUR62031770 Chenopodium quinoa HOM05D006347 ORTHO05D007835 5.3e-115 419.1 521 46.8
ECA238G1908 Erigeron canadensis HOM05D006347 ORTHO05D007835 9.0e-115 418.3 510 46.9
CAN.G1432.26 Capsicum annuum HOM05D006347 ORTHO05D007835 7.6e-114 415.2 505 47.9
PGR119G2351 Punica granatum HOM05D006347 ORTHO05D007835 2.2e-113 413.7 511 46.4
vmacro03233 Vaccinium macrocarpon HOM05D006347 ORTHO05D007835 2.9e-113 413.3 581 45.6
SalBow6G0094 Salvia bowleyana HOM05D006347 ORTHO05D007835 9.3e-112 408.3 539 45.1
Aqoxy1G01013 Aquilegia oxysepala HOM05D006347 ORTHO05D007835 3.5e-111 406.4 504 44.2
Lj2A998T24 Lonicera japonica HOM05D006347 ORTHO05D007835 2.5e-109 400.2 526 45.6
CANSAT56G1452 Cannabis sativa HOM05D006347 ORTHO05D007835 4.8e-108 396.0 518 44.4
Ca_01691_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 8.2e-108 395.2 377 54.4
Ca_30937_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 8.2e-108 395.2 377 54.4
ClCG02G021770 Citrullus lanatus HOM05D006347 ORTHO05D007835 1.1e-107 394.8 525 44.0
AUR62023970 Chenopodium quinoa HOM05D006347 ORTHO05D007835 4.0e-107 392.9 476 47.9
Peaxi162Scf00157g00213 Petunia axillaris HOM05D006347 ORTHO05D007835 5.3e-107 392.5 522 45.4
EL10Ac9g21046 Beta vulgaris HOM05D006347 ORTHO05D007835 4.5e-106 389.4 497 45.9
SGA_v2.0_scaffold27G11587 Striga asiatica HOM05D006347 ORTHO05D007835 6.5e-105 385.6 520 44.8
Sopen06g031100 Solanum pennellii HOM05D006347 ORTHO05D007835 1.1e-104 384.8 525 45.3
PGSC0003DMG400007153 Solanum tuberosum HOM05D006347 ORTHO05D007835 1.1e-104 384.8 531 45.2
COL.COLO4_19257 Corchorus olitorius HOM05D006347 ORTHO05D007835 9.3e-104 381.7 518 45.6
Migut.D02321 Erythranthe guttata HOM05D006347 ORTHO05D007835 1.2e-103 381.3 495 46.5
Haze_23473 Corylus avellana HOM05D006347 ORTHO05D007835 3.5e-103 379.8 498 45.2
Haze_23489 Corylus avellana HOM05D006347 ORTHO05D007835 3.5e-103 379.8 408 51.0
Nitab4.5_0005038g0010 Nicotiana tabacum HOM05D006347 ORTHO05D007835 6.0e-103 379.0 475 45.7
HanXRQChr07g0197561 Helianthus annuus HOM05D006347 ORTHO05D007835 7.9e-103 378.6 484 48.1
PSO063G2566 Papaver somniferum HOM05D006347 ORTHO05D007835 1.1e-101 374.8 520 41.9
Hma1.2p1_0884F.1_g232440 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 6.3e-100 369.0 464 47.4
unitig_899.g14960 Utricularia gibba HOM05D006347 ORTHO05D007835 1.0e-94 351.7 539 41.6
Nitab4.5_0003470g0080 Nicotiana tabacum HOM05D006347 ORTHO05D007835 1.8e-94 350.9 527 42.1
Solyc06g074690.3 Solanum lycopersicum HOM05D006347 ORTHO05D007835 3.9e-94 349.7 585 40.5
Rhsim13G0103600 Rhododendron simsii HOM05D006347 ORTHO05D007835 5.3e-91 339.3 376 51.6
TAR633G1474 Trochodendron aralioides HOM05D006347 ORTHO05D007835 4.2e-88 329.7 356 52.2
PSO339G5358 Papaver somniferum HOM05D006347 ORTHO05D007835 1.8e-86 324.3 436 42.9
Haze_23492 Corylus avellana HOM05D006347 ORTHO05D007835 8.8e-86 322.0 411 46.7
ATR0665G610 Amborella trichopoda HOM05D006347 ORTHO05D007835 2.8e-84 317.0 481 40.1
Ah.01g016170 Amaranthus hybridus HOM05D006347 ORTHO05D007835 1.7e-76 291.2 375 46.4
HPP92_014171 Vanilla planifolia HOM05D006347 ORTHO05D007835 6.5e-73 279.3 564 34.6
HPP92_014151 Vanilla planifolia HOM05D006347 ORTHO05D007835 5.5e-72 276.2 564 34.0
Os03g0684100 Oryza sativa ssp. japonica HOM05D006347 ORTHO05D007835 2.2e-68 264.2 502 35.9
AagrBONN_evm.TU.Sc2ySwM_117.1516 Anthoceros agrestis HOM05D006347 ORTHO05D007835 3.8e-65 253.4 519 34.7
Mapoly0004s0056 Marchantia polymorpha HOM05D006347 ORTHO05D007835 1.2e-63 248.4 340 41.2
Zm00001eb053190 Zea mays HOM05D006347 ORTHO05D007835 6.1e-63 246.1 374 38.0
Pp3c4_24670 Physcomitrium patens HOM05D006347 ORTHO05D007835 2.3e-62 244.2 515 35.0
Peaxi162Scf00755g00310 Petunia axillaris HOM05D006347 ORTHO05D007835 1.3e-60 238.4 336 43.8
Glyma.12G180067 Glycine max HOM05D006347 ORTHO05D007835 5.4e-59 233.0 197 60.4
CBR_g54933 Chara braunii HOM05D006347 ORTHO05D007835 1.6e-58 231.5 323 40.2
FAN16G0411 Fragaria x ananassa HOM05D006347 ORTHO05D007835 5.6e-48 196.4 183 55.2
Glyma.12G180133 Glycine max HOM05D006347 ORTHO05D007835 3.9e-41 173.7 195 46.7
Cpa.g.sc47.36 Carica papaya HOM05D006347 ORTHO05D007835 8.6e-41 172.6 215 48.8
Haze_23495 Corylus avellana HOM05D006347 ORTHO05D007835 1.5e-40 171.8 261 41.8
Haze_23480 Corylus avellana HOM05D006347 ORTHO05D007835 2.9e-36 157.5 152 55.3
Ah.01g016190 Amaranthus hybridus HOM05D006347 ORTHO05D007835 3.9e-33 147.1 234 43.6
SMO265G0001 Selaginella moellendorffii HOM05D006347 ORTHO05D007835 2.2e-28 131.3 228 36.8
CSS0047528 Camellia sinensis var. sinensis HOM05D006347 ORTHO05D007835 4.1e-27 127.1 164 43.3
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 8.9e-22 109.4 130 50.8
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 5.4e-19 100.1 119 51.3
CDE02G2671 Ceratophyllum demersum HOM05D006347 ORTHO05D007835 3.5e-18 97.4 303 26.1
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 3.3e-16 90.9 117 47.9
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 1.2e-15 89.0 117 47.0
TAR633G2060 Trochodendron aralioides HOM05D006347 ORTHO05D007835 4.0e-14 84.0 87 49.4
BcaC03g15934 Brassica carinata HOM05D006347 ORTHO05D007835 1.3e-12 79.0 75 58.7
SEGI_13685 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 2.2e-12 78.2 134 34.3
Hund07723 Selenicereus undatus HOM05D006347 ORTHO05D007835 2.4e-11 74.7 127 37.8
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 2.7e-10 71.2 58 63.8
CSS0039987 Camellia sinensis var. sinensis HOM05D006347 ORTHO05D007835 1.3e-09 68.9 65 60.0
SEGI_35353 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 3.0e-09 67.8 70 51.4
Haze_23490 Corylus avellana HOM05D006347 ORTHO05D007835 3.3e-08 64.3 106 38.7
Haze_23483 Corylus avellana HOM05D006347 ORTHO05D007835 4.3e-08 63.9 99 37.4
Actinidia14339 Actinidia chinensis HOM05D006347 ORTHO05D007835 4.8e-07 60.5 40 67.5


User provided reference genes

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