Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22609 Brassica carinata HOM05D007431 ORTHO05D008438 8.8e-50 201.1 164 100.0
BolC2t07290H Brassica oleracea HOM05D007431 ORTHO05D008438 3.0e-21 106.3 81 80.2
A02p06640 Brassica napus HOM05D007431 ORTHO05D008438 4.3e-20 102.4 79 81.0
C02p11930 Brassica napus HOM05D007431 ORTHO05D008438 4.3e-20 102.4 79 81.0
BraA02t05746Z Brassica rapa HOM05D007431 ORTHO05D008438 4.3e-20 102.4 79 81.0
C03p13110 Brassica napus HOM05D007431 ORTHO05D008438 1.6e-19 100.5 120 56.7
Carub.0002s2217 Capsella rubella HOM05D007431 ORTHO05D008438 9.8e-17 91.3 90 67.8
BolC3t13774H Brassica oleracea HOM05D007431 ORTHO05D008438 1.3e-16 90.9 119 53.8
BraA03t10450Z Brassica rapa HOM05D007431 ORTHO05D008438 1.3e-16 90.9 105 58.1
AT1G75335 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 1.9e-15 87.0 70 72.9
A03p11360 Brassica napus HOM05D007431 ORTHO05D008438 9.2e-15 84.7 106 56.6
Sp6g21690 Schrenkiella parvula HOM05D007431 ORTHO05D008438 2.0e-14 83.6 120 52.5
AT5G60030 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 3.5e-14 82.8 146 45.2
Carub.0008s2073 Capsella rubella HOM05D007431 ORTHO05D008438 7.8e-14 81.6 103 54.4
AL8G36620 Arabidopsis lyrata HOM05D007431 ORTHO05D008438 1.7e-13 80.5 122 50.8
CARHR068680 Cardamine hirsuta HOM05D007431 ORTHO05D008438 1.7e-13 80.5 92 57.6
Aa31LG1G12150 Aethionema arabicum HOM05D007431 ORTHO05D008438 2.5e-12 76.6 71 62.0
MELO3C025719.2 Cucumis melo HOM05D021867 ORTHO05D008438 2.1e-11 73.6 61 63.9
Nn2g12944 Nelumbo nucifera HOM05D007431 ORTHO05D008438 8.1e-11 71.6 96 54.2
Atru.chr3.3765 Acer truncatum HOM05D007431 ORTHO05D008438 1.4e-10 70.9 63 63.5
Aa31LG4G15040 Aethionema arabicum HOM05D007431 ORTHO05D008438 1.8e-10 70.5 96 52.1
THA.LOC104799471 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 2.3e-10 70.1 70 60.0
TAR369G0100 Trochodendron aralioides HOM05D007431 ORTHO05D008438 5.2e-10 68.9 110 49.1
HanXRQChr14g0439961 Helianthus annuus HOM05D007431 ORTHO05D008438 6.8e-10 68.6 87 54.0
Thecc.03G012200 Theobroma cacao HOM05D007431 ORTHO05D008438 8.9e-10 68.2 63 55.6
MD11G1119300 Malus domestica HOM05D016629 ORTHO05D008438 2.6e-09 66.6 60 60.0
CSS0032205 Camellia sinensis var. sinensis HOM05D007431 ORTHO05D008438 3.4e-09 66.2 94 46.8
TAR623G0663 Trochodendron aralioides HOM05D007431 ORTHO05D008438 3.4e-09 66.2 90 48.9
Phvul.001G035300 Phaseolus vulgaris HOM05D007431 ORTHO05D008438 9.8e-09 64.7 61 54.1
Sed0011387 Sechium edule HOM05D007431 ORTHO05D008438 9.8e-09 64.7 61 55.7
Lalb_Chr24g0399681 Lupinus albus HOM05D007431 ORTHO05D008438 1.3e-08 64.3 60 58.3
arahy.Tifrunner.gnm1.ann1.C9XA4X Arachis hypogaea HOM05D007431 ORTHO05D008438 1.7e-08 63.9 75 52.0
MBI15_g23248_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 1.7e-08 63.9 70 54.3
Sc12g0001910 Simmondsia chinensis HOM05D007431 ORTHO05D008438 1.7e-08 63.9 62 54.8
QL01p035383 Quercus lobata HOM05D007431 ORTHO05D008438 2.2e-08 63.5 60 58.3
Cpa.g.sc139.17 Carica papaya HOM05D007431 ORTHO05D008438 2.9e-08 63.2 88 45.5
MBI11_g07544_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 2.9e-08 63.2 70 54.3
THA.LOC104810823 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 2.9e-08 63.2 106 46.2
Thecc.09G259600 Theobroma cacao HOM05D007431 ORTHO05D008438 2.9e-08 63.2 90 44.4
ClCG02G020690 Citrullus lanatus HOM05D021867 ORTHO05D008438 3.7e-08 62.8 97 49.5
Actinidia00802 Actinidia chinensis HOM05D007431 ORTHO05D008438 4.9e-08 62.4 86 46.5
Ciclev10028956m.g Citrus clementina HOM05D007431 ORTHO05D008438 4.9e-08 62.4 63 55.6
MD03G1106700 Malus domestica HOM05D016629 ORTHO05D008438 4.9e-08 62.4 56 62.5
Hma1.2p1_0321F.1_g124100 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 1.1e-07 61.2 84 48.8
MBI18_g47623_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 1.1e-07 61.2 70 51.4
Phvul.001G035400 Phaseolus vulgaris HOM05D007431 ORTHO05D008438 1.1e-07 61.2 61 54.1
THA.LOC104814853 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 1.1e-07 61.2 110 45.5
Sed0003904 Sechium edule HOM05D007431 ORTHO05D008438 1.4e-07 60.8 96 45.8
COL.COLO4_18404 Corchorus olitorius HOM05D007431 ORTHO05D008438 1.9e-07 60.5 83 44.6
Hma1.2p1_0321F.1_g124110 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 1.9e-07 60.5 84 47.6
Lj1P179T36 Lonicera japonica HOM05D007431 ORTHO05D008438 1.9e-07 60.5 68 51.5
MBI15_g23251_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 2.4e-07 60.1 70 51.4
CANSAT11G1515 Cannabis sativa HOM05D007431 ORTHO05D008438 3.2e-07 59.7 109 42.2
CsaV3_6G021930 Cucumis sativus L. HOM05D021867 ORTHO05D008438 3.2e-07 59.7 110 44.5
Dinv06340 Davidia involucrata HOM05D007431 ORTHO05D008438 3.2e-07 59.7 110 41.8
Lalb_Chr22g0356011 Lupinus albus HOM05D007431 ORTHO05D008438 3.2e-07 59.7 60 56.7
Manes.07G083300 Manihot esculenta HOM05D007431 ORTHO05D008438 3.2e-07 59.7 55 56.4
Sabra13G0105800 Salix brachista HOM05D007431 ORTHO05D008438 4.1e-07 59.3 69 47.8
TPR.G26566 Trifolium pratense HOM05D007431 ORTHO05D008438 5.4e-07 58.9 61 52.5
Lsat_1_v5_gn_8_91980 Lactuca sativa HOM05D007431 ORTHO05D008438 7.1e-07 58.5 117 41.9
Nn2g10588 Nelumbo nucifera HOM05D007431 ORTHO05D008438 7.1e-07 58.5 60 55.0
Lsat_1_v5_gn_2_80021 Lactuca sativa HOM05D007431 ORTHO05D008438 9.2e-07 58.2 95 44.2
Glyma.17G228900 Glycine max HOM05D007431 ORTHO05D008438 1.2e-06 57.8 61 52.5
Duzib168G1071 Durio zibethinus HOM05D007431 ORTHO05D008438 1.6e-06 57.4 97 41.2
Potri.019G095600 Populus trichocarpa HOM05D007431 ORTHO05D008438 1.6e-06 57.4 114 40.4
Medtr1g016270 Medicago truncatula HOM05D007431 ORTHO05D008438 2.1e-06 57.0 79 46.8
Psat6g020440 Pisum sativum HOM05D007431 ORTHO05D008438 2.1e-06 57.0 119 41.2
Gohir.A03G036200 Gossypium hirsutum HOM05D007431 ORTHO05D008438 3.5e-06 56.2 119 35.3
Gohir.D03G132100 Gossypium hirsutum HOM05D007431 ORTHO05D008438 3.5e-06 56.2 115 37.4
Gorai.003G139000 Gossypium raimondii HOM05D007431 ORTHO05D008438 3.5e-06 56.2 115 37.4
Aqoxy4G03128 Aquilegia oxysepala HOM05D007431 ORTHO05D008438 6.0e-06 55.5 96 46.9
CDE01G0792 Ceratophyllum demersum HOM05D007431 ORTHO05D008438 6.0e-06 55.5 94 43.6
Glyma.14G094600 Glycine max HOM05D007431 ORTHO05D008438 6.0e-06 55.5 61 52.5
Prupe.6G089500 Prunus persica HOM05D016629 ORTHO05D008438 6.0e-06 55.5 101 41.6
VMungo0647G2370 Vigna mungo HOM05D007431 ORTHO05D008438 6.0e-06 55.5 61 49.2
AUR62034380 Chenopodium quinoa HOM05D007431 ORTHO05D008438 7.8e-06 55.1 104 43.3


User provided reference genes

Program Settings