Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22605 Brassica carinata HOM05D042783 ORTHO05D039130 2.1e-141 505.8 263 100.0
BcaB01g05287 Brassica carinata HOM05D000137 ORTHO05D000503 2.0e-35 153.7 106 78.3
C03p10790 Brassica napus HOM05D000137 ORTHO05D000503 1.7e-34 150.6 107 78.5
A03p09260 Brassica napus HOM05D000137 ORTHO05D000503 3.8e-34 149.4 107 77.6
BraA03t10245Z Brassica rapa HOM05D000137 ORTHO05D000503 3.8e-34 149.4 107 77.6
BolC3t13552H Brassica oleracea HOM05D000137 ORTHO05D000503 1.2e-32 144.4 108 76.9
Sp6g25380 Schrenkiella parvula HOM05D000137 ORTHO05D000503 1.6e-32 144.1 113 71.7
AT5G19010 Arabidopsis thaliana HOM05D000137 ORTHO05D000503 7.8e-32 141.7 107 74.8
Thhalv10013120m.g Eutrema salsugineum HOM05D000137 ORTHO05D000503 1.0e-31 141.4 108 74.1
AL6G30360 Arabidopsis lyrata HOM05D000137 ORTHO05D000503 2.5e-30 136.7 107 73.8
Carub.0006s1732 Capsella rubella HOM05D000137 ORTHO05D000503 1.2e-29 134.4 107 72.9
BcaC04g18628 Brassica carinata HOM05D000137 ORTHO05D000503 2.4e-28 130.2 106 70.8
BcaB08g36628 Brassica carinata HOM05D000137 ORTHO05D000503 5.2e-28 129.0 104 70.2
CARHR193990 Cardamine hirsuta HOM05D000137 ORTHO05D000503 5.2e-28 129.0 109 71.6
Sp3g25730 Schrenkiella parvula HOM05D042783 ORTHO05D039130 4.4e-27 125.9 61 100.0
A10p20680 Brassica napus HOM05D000137 ORTHO05D000503 5.8e-27 125.6 107 70.1
BraA10t44131Z Brassica rapa HOM05D000137 ORTHO05D000503 5.8e-27 125.6 107 70.1
C09p57470 Brassica napus HOM05D000137 ORTHO05D000503 1.9e-25 120.6 107 70.1
BolC9t58615H Brassica oleracea HOM05D000137 ORTHO05D000503 1.9e-25 120.6 107 70.1
Aa31LG11G10720 Aethionema arabicum HOM05D000137 ORTHO05D000503 1.6e-21 107.5 138 56.5
THA.LOC104802740 Tarenaya hassleriana HOM05D000137 ORTHO05D000503 1.5e-19 100.9 118 58.5
Haze_00978 Corylus avellana HOM05D000137 ORTHO05D000503 4.9e-18 95.9 129 51.9
Cfa015564 Carpinus fangiana HOM05D000137 ORTHO05D000503 1.6e-16 90.9 135 48.9
QL06p005838 Quercus lobata HOM05D000137 ORTHO05D000503 1.6e-16 90.9 134 50.0
Duzib151G0642 Durio zibethinus HOM05D000137 ORTHO05D000503 4.6e-16 89.4 114 54.4
Manes.15G021900 Manihot esculenta HOM05D000137 ORTHO05D000503 6.0e-16 89.0 135 45.9
COL.COLO4_21628 Corchorus olitorius HOM05D000137 ORTHO05D000503 7.9e-16 88.6 117 52.1
Gohir.A02G024900 Gossypium hirsutum HOM05D000137 ORTHO05D000503 1.0e-15 88.2 149 44.3
Gohir.D02G032100 Gossypium hirsutum HOM05D000137 ORTHO05D000503 3.9e-15 86.3 149 43.6
Gorai.005G035600 Gossypium raimondii HOM05D000137 ORTHO05D000503 3.9e-15 86.3 149 43.6
Thecc.04G219700 Theobroma cacao HOM05D000137 ORTHO05D000503 5.1e-15 85.9 131 48.1
MD13G1181100 Malus domestica HOM05D000137 ORTHO05D000503 6.7e-15 85.5 98 59.2
Prupe.1G149300 Prunus persica HOM05D000137 ORTHO05D000503 6.7e-15 85.5 124 52.4
Actinidia00082 Actinidia chinensis HOM05D000137 ORTHO05D000503 8.7e-15 85.1 116 52.6
Dinv38370 Davidia involucrata HOM05D000137 ORTHO05D000503 1.5e-14 84.3 133 45.9
GSVIVG01017873001 Vitis vinifera HOM05D000137 ORTHO05D000503 2.5e-14 83.6 117 50.4
CiPaw.01G158500 Carya illinoinensis HOM05D000137 ORTHO05D000503 3.3e-14 83.2 133 46.6
CiPaw.02G090700 Carya illinoinensis HOM05D000137 ORTHO05D000503 3.3e-14 83.2 135 45.9
MD16G1181800 Malus domestica HOM05D000137 ORTHO05D000503 3.3e-14 83.2 98 57.1
Duzib212G0741 Durio zibethinus HOM05D000137 ORTHO05D000503 4.3e-14 82.8 114 50.9
Cpa.g.sc16.44 Carica papaya HOM05D000137 ORTHO05D000503 7.4e-14 82.0 133 46.6
Manes.03G186100 Manihot esculenta HOM05D000137 ORTHO05D000503 7.4e-14 82.0 114 50.9
EL10Ac3g06324 Beta vulgaris HOM05D000137 ORTHO05D000503 9.6e-14 81.6 138 44.2
Ca_00613_v3 Cicer arietinum L. HOM05D000137 ORTHO05D000503 1.3e-13 81.3 134 44.0
Actinidia08520 Actinidia chinensis HOM05D000137 ORTHO05D000503 2.8e-13 80.1 98 56.1
Nn4g26162 Nelumbo nucifera HOM05D000137 ORTHO05D000503 2.8e-13 80.1 134 45.5
Potri.008G200800 Populus trichocarpa HOM05D000137 ORTHO05D000503 2.8e-13 80.1 122 49.2
CSS0027011 Camellia sinensis var. sinensis HOM05D000137 ORTHO05D000503 3.7e-13 79.7 97 55.7
CSS0035254 Camellia sinensis var. sinensis HOM05D000137 ORTHO05D000503 3.7e-13 79.7 97 55.7
CANSAT78G0090 Cannabis sativa HOM05D000137 ORTHO05D000503 4.8e-13 79.3 134 45.5
CSS0017766 Camellia sinensis var. sinensis HOM05D000137 ORTHO05D000503 6.2e-13 79.0 116 49.1
Sabra08G0160400 Salix brachista HOM05D000137 ORTHO05D000503 6.2e-13 79.0 142 43.7
arahy.Tifrunner.gnm1.ann1.9G5FU0 Arachis hypogaea HOM05D000137 ORTHO05D000503 1.1e-12 78.2 115 47.8
FvH4_4g14280 Fragaria vesca HOM05D000137 ORTHO05D000503 1.1e-12 78.2 103 51.5
Ciclev10004660m.g Citrus clementina HOM05D000137 ORTHO05D000503 2.4e-12 77.0 132 45.5
FAN07G2554 Fragaria x ananassa HOM05D000137 ORTHO05D000503 2.4e-12 77.0 103 50.5
Hund12210 Selenicereus undatus HOM05D000137 ORTHO05D000503 2.4e-12 77.0 132 46.2
TWI53G2101 Tripterygium wilfordii HOM05D000137 ORTHO05D000503 2.4e-12 77.0 128 44.5
arahy.Tifrunner.gnm1.ann1.VK23H5 Arachis hypogaea HOM05D000137 ORTHO05D000503 3.1e-12 76.6 115 47.0
Lj6g0015212 Lotus japonicus HOM05D000137 ORTHO05D000503 3.1e-12 76.6 133 43.6
RcHm_v2.0_Chr4g0418931 Rosa chinensis HOM05D000137 ORTHO05D000503 3.1e-12 76.6 123 45.5
TWI09G1239 Tripterygium wilfordii HOM05D000137 ORTHO05D000503 3.1e-12 76.6 123 46.3
Glyma.07G255400 Glycine max HOM05D000137 ORTHO05D000503 4.0e-12 76.3 138 41.3
Aqoxy2G03232 Aquilegia oxysepala HOM05D000137 ORTHO05D000503 6.9e-12 75.5 149 41.6
Medtr2g021330 Medicago truncatula HOM05D000137 ORTHO05D000503 6.9e-12 75.5 117 45.3
Nn1g02138 Nelumbo nucifera HOM05D000137 ORTHO05D000503 6.9e-12 75.5 134 44.8
Nitab4.5_0000732g0180 Nicotiana tabacum HOM05D000137 ORTHO05D000503 9.0e-12 75.1 116 48.3
PGR031G3611 Punica granatum HOM05D000137 ORTHO05D000503 9.0e-12 75.1 106 50.0
Sopen01g032020 Solanum pennellii HOM05D000137 ORTHO05D000503 9.0e-12 75.1 116 49.1
PGSC0003DMG400004357 Solanum tuberosum HOM05D000137 ORTHO05D000503 9.0e-12 75.1 116 49.1
Nitab4.5_0002592g0010 Nicotiana tabacum HOM05D000137 ORTHO05D000503 1.2e-11 74.7 116 48.3
MSTRG.24759 Avicennia marina HOM05D000137 ORTHO05D000503 2.0e-11 73.9 96 49.0
FAN17G1874 Fragaria x ananassa HOM05D000137 ORTHO05D000503 2.0e-11 73.9 106 48.1
Solyc01g080240.4 Solanum lycopersicum HOM05D000137 ORTHO05D000503 2.0e-11 73.9 116 48.3
AUR62030051 Chenopodium quinoa HOM05D000137 ORTHO05D000503 2.6e-11 73.6 149 37.6
ClCG06G005720 Citrullus lanatus HOM05D000137 ORTHO05D000503 2.6e-11 73.6 124 46.0
Glyma.13G210300 Glycine max HOM05D000137 ORTHO05D000503 2.6e-11 73.6 116 44.8
Sc13g0003860 Simmondsia chinensis HOM05D000137 ORTHO05D000503 3.4e-11 73.2 100 47.0
MELO3C021394.2 Cucumis melo HOM05D000137 ORTHO05D000503 4.5e-11 72.8 123 45.5
FAN22G0878 Fragaria x ananassa HOM05D000137 ORTHO05D000503 4.5e-11 72.8 103 49.5
Peaxi162Scf00095g00913 Petunia axillaris HOM05D000137 ORTHO05D000503 4.5e-11 72.8 116 46.6
Phvul.006G155300 Phaseolus vulgaris HOM05D000137 ORTHO05D000503 5.8e-11 72.4 133 42.1
AUR62002635 Chenopodium quinoa HOM05D000137 ORTHO05D000503 7.6e-11 72.0 129 40.3
Potri.010G029700 Populus trichocarpa HOM05D000137 ORTHO05D000503 7.6e-11 72.0 133 43.6
vmacro15299 Vaccinium macrocarpon HOM05D000137 ORTHO05D000503 7.6e-11 72.0 98 48.0
Cc03_g02990 Coffea canephora HOM05D000137 ORTHO05D000503 9.9e-11 71.6 131 45.8
Psat1g184720 Pisum sativum HOM05D000137 ORTHO05D000503 9.9e-11 71.6 115 45.2
SalBow2G1082 Salvia bowleyana HOM05D000137 ORTHO05D000503 9.9e-11 71.6 107 46.7
VMungo0540G1614 Vigna mungo HOM05D000137 ORTHO05D000503 9.9e-11 71.6 133 41.4
Lalb_Chr12g0196261 Lupinus albus HOM05D000137 ORTHO05D000503 1.3e-10 71.2 134 41.0
CAN.G522.2 Capsicum annuum HOM05D000137 ORTHO05D000503 1.7e-10 70.9 115 46.1
CsaV3_6G005430 Cucumis sativus L. HOM05D000137 ORTHO05D000503 1.7e-10 70.9 121 47.1
Sed0021666 Sechium edule HOM05D000137 ORTHO05D000503 2.2e-10 70.5 120 45.0
HanXRQChr03g0071491 Helianthus annuus HOM05D000137 ORTHO05D000503 2.9e-10 70.1 104 45.2
TWI73G1247 Tripterygium wilfordii HOM05D000137 ORTHO05D000503 3.8e-10 69.7 119 45.4
TAR365G1238 Trochodendron aralioides HOM05D000137 ORTHO05D000503 3.8e-10 69.7 114 45.6
TAR365G1262 Trochodendron aralioides HOM05D000137 ORTHO05D000503 3.8e-10 69.7 114 45.6
MSTRG.3983 Avicennia marina HOM05D000137 ORTHO05D000503 6.4e-10 68.9 97 49.5
DCAR_030590 Daucus carota HOM05D000137 ORTHO05D000503 6.4e-10 68.9 134 43.3
Lalb_Chr15g0087321 Lupinus albus HOM05D000137 ORTHO05D000503 6.4e-10 68.9 106 46.2
TPR.G28921 Trifolium pratense HOM05D000137 ORTHO05D000503 8.4e-10 68.6 117 43.6
MBI17_g47758_MAGBIO Magnolia biondii HOM05D000137 ORTHO05D000503 1.4e-09 67.8 135 40.0
Atru.chr4.2591 Acer truncatum HOM05D000137 ORTHO05D000503 4.2e-09 66.2 156 38.5
ECA240G2969 Erigeron canadensis HOM05D000137 ORTHO05D000503 4.2e-09 66.2 138 38.4
Eucgr.B01157 Eucalyptus grandis HOM05D000137 ORTHO05D000503 1.6e-08 64.3 118 41.5
PSO170G5369 Papaver somniferum HOM05D000137 ORTHO05D000503 4.6e-08 62.8 118 43.2
Rhsim02G0019000 Rhododendron simsii HOM05D000137 ORTHO05D000503 7.9e-08 62.0 154 37.7
THA.LOC104818787 Tarenaya hassleriana HOM05D000137 ORTHO05D000503 7.9e-08 62.0 114 45.6
Migut.N00143 Erythranthe guttata HOM05D000137 ORTHO05D000503 1.0e-07 61.6 91 42.9
Lj6A663T87 Lonicera japonica HOM05D000137 ORTHO05D000503 1.0e-07 61.6 107 46.7
Rhsim04G0209600 Rhododendron simsii HOM05D000137 ORTHO05D000503 1.0e-07 61.6 114 43.0
VMungo1215G0501 Vigna mungo HOM05D000137 ORTHO05D000503 1.0e-07 61.6 134 38.1
Oeu042775.1 Olea europaea HOM05D000137 ORTHO05D000503 1.8e-07 60.8 96 46.9
Oeu029296.2 Olea europaea HOM05D000137 ORTHO05D000503 6.7e-07 58.9 95 47.4
Lalb_Chr13g0304051 Lupinus albus HOM05D000137 ORTHO05D000503 8.7e-07 58.5 134 38.1
HanXRQChr09g0248301 Helianthus annuus HOM05D000137 ORTHO05D000503 1.5e-06 57.8 132 38.6
Lsat_1_v5_gn_7_62441 Lactuca sativa HOM05D000137 ORTHO05D000503 1.9e-06 57.4 140 37.9
SGA_v2.0_scaffold107G30785 Striga asiatica HOM05D000137 ORTHO05D000503 3.3e-06 56.6 111 33.3
Phvul.003G095900 Phaseolus vulgaris HOM05D000137 ORTHO05D000503 4.3e-06 56.2 121 40.5


User provided reference genes

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