Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 1.3e-85 319.7 161 100.0
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 1.7e-74 282.7 161 84.5
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 8.6e-74 280.4 161 87.0
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 8.6e-74 280.4 161 87.0
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 8.6e-74 280.4 161 87.0
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 2.1e-72 275.8 161 85.7
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 2.1e-72 275.8 161 85.7
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 2.1e-72 275.8 161 85.7
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 2.1e-72 275.8 162 86.4
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 9.9e-70 266.9 163 81.0
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 9.9e-70 266.9 159 83.0
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 3.2e-68 261.9 161 83.2
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 1.2e-67 260.0 145 86.9
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 4.3e-65 251.5 162 77.8
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 1.8e-63 246.1 146 78.8
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 5.2e-63 244.6 146 80.1
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 3.2e-60 235.3 143 76.2
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 6.0e-59 231.1 144 75.7
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 2.3e-58 229.2 144 74.3
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 3.9e-58 228.4 143 75.5
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 6.6e-58 227.6 143 74.8
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 6.6e-58 227.6 143 73.4
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 1.9e-57 226.1 143 72.7
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 4.3e-57 224.9 143 72.0
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 4.3e-57 224.9 159 67.3
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 1.3e-56 223.4 142 71.8
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 1.6e-56 223.0 143 74.1
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 2.1e-56 222.6 143 74.1
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 2.8e-56 222.2 143 74.1
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 6.2e-56 221.1 145 72.4
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 6.2e-56 221.1 143 71.3
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 1.1e-55 220.3 159 67.9
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 1.1e-55 220.3 143 73.4
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 1.4e-55 219.9 142 71.8
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 1.8e-55 219.5 139 74.8
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 1.8e-55 219.5 156 67.3
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 2.4e-55 219.2 143 72.0
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 4.0e-55 218.4 150 68.0
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 1.2e-54 216.9 154 68.2
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 1.5e-54 216.5 146 71.9
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 1.5e-54 216.5 146 71.9
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 2.0e-54 216.1 153 70.6
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 2.6e-54 215.7 147 71.4
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 3.4e-54 215.3 141 72.3
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 4.5e-54 214.9 157 68.2
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 4.5e-54 214.9 146 71.2
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 5.8e-54 214.5 143 73.4
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 9.9e-54 213.8 144 70.1
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 9.9e-54 213.8 148 70.3
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 9.9e-54 213.8 145 71.7
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 1.7e-53 213.0 154 66.9
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 2.9e-53 212.2 144 70.8
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 2.9e-53 212.2 145 70.3
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 3.8e-53 211.8 168 63.7
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 4.9e-53 211.5 143 69.2
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 4.9e-53 211.5 141 73.0
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 1.9e-52 209.5 145 70.3
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 4.2e-52 208.4 132 75.0
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 5.4e-52 208.0 162 62.3
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 1.2e-51 206.8 143 70.6
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 1.6e-51 206.5 141 70.9
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 3.5e-51 205.3 144 70.1
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 3.5e-51 205.3 146 71.2
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 4.6e-51 204.9 142 66.9
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 6.0e-51 204.5 142 70.4
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 1.0e-50 203.8 152 65.1
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 1.0e-50 203.8 152 63.8
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 5.1e-50 201.4 144 67.4
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 6.7e-50 201.1 143 69.2
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 6.7e-50 201.1 143 70.6
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 8.7e-50 200.7 139 69.1
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 1.1e-49 200.3 143 67.8
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 1.1e-49 200.3 135 68.1
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 1.9e-49 199.5 142 68.3
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 1.9e-49 199.5 147 65.3
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 1.9e-49 199.5 145 69.0
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 3.3e-49 198.7 143 65.7
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 4.3e-49 198.4 144 66.0
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 2.1e-48 196.1 138 68.1
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 2.4e-47 192.6 140 66.4
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 4.5e-46 188.3 137 66.4
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 9.9e-46 187.2 143 63.6
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 9.9e-46 187.2 143 63.6
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 9.9e-46 187.2 136 69.9
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 2.2e-45 186.0 141 65.2
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 2.2e-45 186.0 136 70.6
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 1.9e-44 183.0 139 64.0
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 4.2e-44 181.8 156 62.8
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 1.6e-43 179.9 135 62.2
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 1.1e-39 167.2 151 58.9
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 2.4e-39 166.0 107 71.0
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 5.8e-38 161.4 134 59.0
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 1.0e-37 160.6 135 57.0
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 2.9e-37 159.1 139 55.4
Zm00001eb217400 Zea mays HOM05D001568 ORTHO05D009161 3.8e-37 158.7 149 57.0
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 3.9e-34 148.7 143 53.1
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 8.7e-34 147.5 135 53.3
Mapoly0117s0004 Marchantia polymorpha HOM05D001568 ORTHO05D009161 1.5e-33 146.7 135 55.6
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 1.5e-33 146.7 135 54.1
Oeu037289.1 Olea europaea HOM05D001568 ORTHO05D009161 1.1e-31 140.6 145 52.4
BcaB03g16261 Brassica carinata HOM05D001568 ORTHO05D009161 1.8e-31 139.8 127 61.4
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 5.0e-29 131.7 98 66.3
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 8.5e-29 131.0 95 68.4
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 4.6e-27 125.2 143 47.6
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 7.9e-27 124.4 97 62.9
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 7.9e-27 124.4 97 62.9
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 2.4e-23 112.8 138 47.1
ECA234G4452 Erigeron canadensis HOM05D000058 ORTHO05D000255 5.0e-21 105.1 81 69.1
Os08g0485300 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 5.0e-21 105.1 103 54.4
MCO07G364 Micromonas commoda HOM05D001568 ORTHO05D009161 4.4e-17 92.0 164 36.0
Cre12.g497650 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D009161 5.7e-17 91.7 157 36.9
MD05G1105400 Malus domestica HOM05D001568 ORTHO05D009161 1.5e-14 83.6 74 55.4
COL.COLO4_02194 Corchorus olitorius HOM05D001568 ORTHO05D009161 2.8e-08 62.8 103 36.9


User provided reference genes

Program Settings