Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22547 Brassica carinata HOM05D009319 ORTHO05D000721 3.6e-129 464.9 236 100.0
BcaC03g14030 Brassica carinata HOM05D009319 ORTHO05D000721 1.4e-59 233.8 180 71.7
BolC2t07368H Brassica oleracea HOM05D009319 ORTHO05D000721 1.4e-59 233.8 180 71.7
BraA02t05807Z Brassica rapa HOM05D009319 ORTHO05D000721 4.0e-59 232.3 180 71.7
C02p12700 Brassica napus HOM05D009319 ORTHO05D000721 5.2e-59 231.9 180 71.1
BcaB05g22489 Brassica carinata HOM05D009319 ORTHO05D000721 2.6e-55 219.5 160 75.0
C09p51480 Brassica napus HOM05D009319 ORTHO05D000721 2.3e-51 206.5 181 65.2
BolC9t58007H Brassica oleracea HOM05D009319 ORTHO05D000721 2.3e-51 206.5 181 65.2
BcaB08g36278 Brassica carinata HOM05D009319 ORTHO05D000721 1.5e-50 203.8 181 65.2
BcaC04g19808 Brassica carinata HOM05D009319 ORTHO05D000721 9.8e-50 201.1 181 64.1
Thhalv10014238m.g Eutrema salsugineum HOM05D009319 ORTHO05D000721 1.7e-49 200.3 181 64.1
A10p16430 Brassica napus HOM05D009319 ORTHO05D000721 2.8e-49 199.5 187 63.1
BraA10t43727Z Brassica rapa HOM05D009319 ORTHO05D000721 2.8e-49 199.5 187 63.1
AT5G59050 Arabidopsis thaliana HOM05D009319 ORTHO05D000721 1.4e-48 197.2 194 61.9
CARHR285570 Cardamine hirsuta HOM05D009319 ORTHO05D000721 2.4e-48 196.4 181 65.2
Sp6g20920 Schrenkiella parvula HOM05D009319 ORTHO05D000721 2.4e-48 196.4 183 63.4
Carub.0008s1989 Capsella rubella HOM05D009319 ORTHO05D000721 1.0e-46 191.0 189 62.4
BcaB01g04601 Brassica carinata HOM05D009319 ORTHO05D000721 2.2e-46 189.9 183 61.2
C03p13890 Brassica napus HOM05D009319 ORTHO05D000721 1.1e-45 187.6 183 59.6
A03p11830 Brassica napus HOM05D009319 ORTHO05D000721 6.1e-44 181.8 183 57.9
BolC3t13836H Brassica oleracea HOM05D009319 ORTHO05D000721 8.8e-43 177.9 183 57.4
BraA03t10494Z Brassica rapa HOM05D009319 ORTHO05D000721 1.2e-42 177.6 183 56.8
A02p07280 Brassica napus HOM05D009319 ORTHO05D000721 5.0e-30 135.6 124 62.1
THA.LOC104810743 Tarenaya hassleriana HOM05D009319 ORTHO05D000721 1.3e-25 120.9 214 43.5
Aa31LG4G15830 Aethionema arabicum HOM05D009319 ORTHO05D000721 1.6e-23 114.0 172 46.5
Aa31LG1G11750 Aethionema arabicum HOM05D009319 ORTHO05D000721 2.3e-22 110.2 95 68.4
BcaB04g20734 Brassica carinata HOM05D009319 ORTHO05D000721 5.2e-19 99.0 106 54.7
BcaB04g18390 Brassica carinata HOM05D009319 ORTHO05D000721 3.2e-16 89.7 96 55.2
Duzib168G0052 Durio zibethinus HOM05D001128 ORTHO05D000721 4.3e-13 79.3 245 31.4
Gohir.A05G091900 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.4e-11 74.3 182 35.2
Thecc.09G311600 Theobroma cacao HOM05D001128 ORTHO05D000721 3.1e-11 73.2 244 29.9
Duzib170G1159 Durio zibethinus HOM05D001128 ORTHO05D000721 5.2e-11 72.4 248 30.2
Atru.chr3.4033 Acer truncatum HOM05D001128 ORTHO05D000721 8.9e-11 71.6 226 35.8
Prupe.6G067000 Prunus persica HOM05D001128 ORTHO05D000721 2.9e-09 66.6 257 30.4
Gohir.D05G092700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.1e-08 64.7 245 30.6
Gorai.009G095300 Gossypium raimondii HOM05D001128 ORTHO05D000721 2.4e-08 63.5 246 30.5
Ca_01300_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 2.7e-07 60.1 207 32.4
Psat5g286040 Pisum sativum HOM05D001128 ORTHO05D000721 3.5e-07 59.7 168 33.9
RcHm_v2.0_Chr5g0066981 Rosa chinensis HOM05D001128 ORTHO05D000721 6.0e-07 58.9 64 48.4
Gohir.A03G046700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.0e-06 58.2 140 31.4
Ciclev10029021m.g Citrus clementina HOM05D001128 ORTHO05D000721 1.3e-06 57.8 104 39.4
FvH4_3g37230 Fragaria vesca HOM05D001128 ORTHO05D000721 2.3e-06 57.0 64 48.4
FAN16G1449 Fragaria x ananassa HOM05D001128 ORTHO05D000721 6.6e-06 55.5 255 27.1
Nn2g11296 Nelumbo nucifera HOM05D001128 ORTHO05D000721 6.6e-06 55.5 73 45.2
TPR.G6832 Trifolium pratense HOM05D001128 ORTHO05D000721 6.6e-06 55.5 220 30.5
FAN25G3787 Fragaria x ananassa HOM05D001128 ORTHO05D000721 8.6e-06 55.1 64 46.9
Manes.10G020800 Manihot esculenta HOM05D001128 ORTHO05D000721 8.6e-06 55.1 54 50.0


User provided reference genes

Program Settings