Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22524 Brassica carinata HOM05D004939 ORTHO05D005843 3.4e-115 418.3 205 100.0
BcaC03g13999 Brassica carinata HOM05D004939 ORTHO05D005843 6.9e-60 234.6 188 71.3
C02p12380 Brassica napus HOM05D004939 ORTHO05D005843 2.9e-58 229.2 192 64.6
C05p49160 Brassica napus HOM05D004939 ORTHO05D005843 6.9e-52 208.0 238 54.2
BcaC09g49204 Brassica carinata HOM05D004939 ORTHO05D005843 2.2e-45 186.4 279 46.2
C01p41420 Brassica napus HOM05D004939 ORTHO05D005843 2.2e-45 186.4 262 48.1
BolC1t04101H Brassica oleracea HOM05D004939 ORTHO05D005843 2.8e-45 186.0 280 45.7
C06p34250 Brassica napus HOM05D004939 ORTHO05D005843 3.1e-44 182.6 269 47.6
BraA02t08500Z Brassica rapa HOM05D004939 ORTHO05D005843 4.2e-41 172.2 270 46.3
BcaB06g28697 Brassica carinata HOM05D004939 ORTHO05D005843 8.8e-39 164.5 289 42.2
BolC6t38544H Brassica oleracea HOM05D004939 ORTHO05D005843 1.3e-37 160.6 270 44.8
BcaC08g45668 Brassica carinata HOM05D004939 ORTHO05D005843 1.1e-36 157.5 273 44.0
C04p15520 Brassica napus HOM05D004939 ORTHO05D005843 4.5e-35 152.1 290 42.8
BolC4t23123H Brassica oleracea HOM05D004939 ORTHO05D005843 4.5e-35 152.1 290 42.8
Sp4g15900 Schrenkiella parvula HOM05D004939 ORTHO05D005843 5.0e-34 148.7 288 40.3
BcaC02g11440 Brassica carinata HOM05D004939 ORTHO05D005843 1.2e-32 144.1 290 40.3
AL4G29230 Arabidopsis lyrata HOM05D004939 ORTHO05D005843 4.0e-31 139.0 295 39.3
Thhalv10016779m.g Eutrema salsugineum HOM05D004939 ORTHO05D005843 5.2e-31 138.7 289 38.1
BolC2t07338H Brassica oleracea HOM05D004939 ORTHO05D005843 1.2e-30 137.5 151 55.0
Carub.0004s1519 Capsella rubella HOM05D004939 ORTHO05D005843 3.3e-30 136.0 294 38.1
Aa31LG9G13490 Aethionema arabicum HOM05D004939 ORTHO05D005843 1.1e-28 131.0 289 36.3
BcaC02g07802 Brassica carinata HOM05D004939 ORTHO05D005843 1.3e-26 124.0 266 37.2
BcaC05g28813 Brassica carinata HOM05D004939 ORTHO05D005843 1.7e-26 123.6 140 56.4
CARHR127580 Cardamine hirsuta HOM05D004939 ORTHO05D005843 6.5e-26 121.7 303 35.0
BraA05t20140Z Brassica rapa HOM05D004939 ORTHO05D005843 8.5e-26 121.3 290 36.9
BcaB02g10574 Brassica carinata HOM05D004939 ORTHO05D005843 7.2e-25 118.2 290 36.9
A05p11970 Brassica napus HOM05D004939 ORTHO05D005843 1.6e-24 117.1 295 36.6
AT2G33560 Arabidopsis thaliana HOM05D004939 ORTHO05D005843 1.8e-23 113.6 295 35.6
C04p63070 Brassica napus HOM05D004939 ORTHO05D005843 2.2e-21 106.7 158 51.9
BolC4t27782H Brassica oleracea HOM05D004939 ORTHO05D005843 2.2e-21 106.7 158 51.9
THA.LOC104805020 Tarenaya hassleriana HOM05D004939 ORTHO05D005843 7.7e-19 98.2 296 31.8
BcaB05g22459 Brassica carinata HOM05D004939 ORTHO05D005843 1.5e-17 94.0 292 33.9
Potri.005G258300 Populus trichocarpa HOM05D004939 ORTHO05D005843 4.2e-17 92.4 291 28.9
Hma1.2p1_0914F.1_g236160 Hydrangea macrophylla HOM05D004939 ORTHO05D005843 7.2e-17 91.7 290 28.3
Sabra05G0200000 Salix brachista HOM05D004939 ORTHO05D005843 2.1e-16 90.1 289 28.4
Eucgr.F03614 Eucalyptus grandis HOM05D004939 ORTHO05D005843 4.7e-16 89.0 284 28.9
CiPaw.07G131300 Carya illinoinensis HOM05D004939 ORTHO05D005843 1.0e-15 87.8 290 29.3
Hma1.2p1_0914F.1_g236170 Hydrangea macrophylla HOM05D004939 ORTHO05D005843 1.0e-15 87.8 151 35.8
Haze_22877 Corylus avellana HOM05D004939 ORTHO05D005843 1.4e-15 87.4 147 36.7
Gohir.A05G282600 Gossypium hirsutum HOM05D004939 ORTHO05D005843 6.8e-15 85.1 289 29.1
Lj4A813T64 Lonicera japonica HOM05D004939 ORTHO05D005843 1.5e-14 84.0 151 35.8
Migut.N02996 Erythranthe guttata HOM05D004939 ORTHO05D005843 2.6e-14 83.2 290 29.0
DCAR_023017 Daucus carota HOM05D004939 ORTHO05D005843 3.4e-14 82.8 151 34.4
Gohir.D05G283802 Gossypium hirsutum HOM05D004939 ORTHO05D005843 3.4e-14 82.8 289 29.1
Gorai.009G298300 Gossypium raimondii HOM05D004939 ORTHO05D005843 3.4e-14 82.8 289 29.1
Thecc.10G149200 Theobroma cacao HOM05D004939 ORTHO05D005843 5.7e-14 82.0 290 29.7
BraA02t04781Z Brassica rapa HOM05D004939 ORTHO05D005843 7.5e-14 81.6 56 78.6
Medtr1g035090 Medicago truncatula HOM05D004939 ORTHO05D005843 1.3e-13 80.9 150 35.3
Gohir.D05G283800 Gossypium hirsutum HOM05D004939 ORTHO05D005843 1.7e-13 80.5 289 28.7
Lsat_1_v5_gn_2_3201 Lactuca sativa HOM05D004939 ORTHO05D005843 1.7e-13 80.5 292 28.1
Prupe.5G002900 Prunus persica HOM05D004939 ORTHO05D005843 2.8e-13 79.7 151 33.1
SalBow6G2808 Salvia bowleyana HOM05D004939 ORTHO05D005843 2.8e-13 79.7 175 32.6
Dinv23346 Davidia involucrata HOM05D004939 ORTHO05D005843 4.9e-13 79.0 254 28.0
Rhsim06G0001700 Rhododendron simsii HOM05D004939 ORTHO05D005843 6.3e-13 78.6 134 35.1
Actinidia37902 Actinidia chinensis HOM05D004939 ORTHO05D005843 8.3e-13 78.2 135 35.6
FAN18G1404 Fragaria x ananassa HOM05D004939 ORTHO05D005843 1.1e-12 77.8 204 30.9
PGR031G2869 Punica granatum HOM05D004939 ORTHO05D005843 1.1e-12 77.8 292 29.5
TPR.G22378 Trifolium pratense HOM05D004939 ORTHO05D005843 1.1e-12 77.8 150 34.0
Ciclev10001515m.g Citrus clementina HOM05D004939 ORTHO05D005843 1.4e-12 77.4 151 33.8
Duzib128G1725 Durio zibethinus HOM05D004939 ORTHO05D005843 1.4e-12 77.4 288 26.4
HanXRQChr14g0427951 Helianthus annuus HOM05D004939 ORTHO05D005843 1.4e-12 77.4 175 31.4
unitig_85.g27224 Utricularia gibba HOM05D004939 ORTHO05D005843 1.4e-12 77.4 135 34.8
Cfa014153 Carpinus fangiana HOM05D004939 ORTHO05D005843 2.4e-12 76.6 182 30.2
Cc10_g00160 Coffea canephora HOM05D004939 ORTHO05D005843 3.1e-12 76.3 138 35.5
ECA238G2856 Erigeron canadensis HOM05D004939 ORTHO05D005843 3.1e-12 76.3 293 27.0
TAR381G1514 Trochodendron aralioides HOM05D000924 ORTHO05D001209 3.1e-12 76.3 172 29.7
FvH4_5g26460 Fragaria vesca HOM05D004939 ORTHO05D005843 4.1e-12 75.9 209 30.1
Lalb_Chr10g0095291 Lupinus albus HOM05D004939 ORTHO05D005843 4.1e-12 75.9 149 33.6
Nitab4.5_0000464g0110 Nicotiana tabacum HOM05D004939 ORTHO05D005843 4.1e-12 75.9 259 26.3
PGSC0003DMG400010009 Solanum tuberosum HOM05D004939 ORTHO05D005843 5.4e-12 75.5 259 25.9
TWI56G0687 Tripterygium wilfordii HOM05D004939 ORTHO05D005843 5.4e-12 75.5 151 33.8
CSS0014437 Camellia sinensis var. sinensis HOM05D004939 ORTHO05D005843 7.0e-12 75.1 135 34.8
arahy.Tifrunner.gnm1.ann1.6I9FYE Arachis hypogaea HOM05D004939 ORTHO05D005843 9.2e-12 74.7 269 26.8
arahy.Tifrunner.gnm1.ann1.V9NZM2 Arachis hypogaea HOM05D004939 ORTHO05D005843 9.2e-12 74.7 268 25.0
CSS0031643 Camellia sinensis var. sinensis HOM05D004939 ORTHO05D005843 9.2e-12 74.7 136 34.6
FAN04G1628 Fragaria x ananassa HOM05D004939 ORTHO05D005843 9.2e-12 74.7 209 31.1
FAN08G1940 Fragaria x ananassa HOM05D004939 ORTHO05D005843 9.2e-12 74.7 124 37.1
Lj2g0017318 Lotus japonicus HOM05D004939 ORTHO05D005843 9.2e-12 74.7 150 33.3
Ca_12499_v3 Cicer arietinum L. HOM05D004939 ORTHO05D005843 1.2e-11 74.3 150 32.0
FAN13G2929 Fragaria x ananassa HOM05D004939 ORTHO05D005843 1.2e-11 74.3 124 36.3
Nn5g31070 Nelumbo nucifera HOM05D004939 ORTHO05D005843 1.2e-11 74.3 290 25.5
Manes.05G129700 Manihot esculenta HOM05D004939 ORTHO05D005843 2.0e-11 73.6 151 31.8
Potri.002G002900 Populus trichocarpa HOM05D004939 ORTHO05D005843 2.0e-11 73.6 151 31.8
Peaxi162Scf00385g00719 Petunia axillaris HOM05D004939 ORTHO05D005843 2.7e-11 73.2 253 26.1
Glyma.07G159700 Glycine max HOM05D004939 ORTHO05D005843 3.5e-11 72.8 135 33.3
Sopen04g036540 Solanum pennellii HOM05D004939 ORTHO05D005843 3.5e-11 72.8 259 25.9
Solyc04g082900.4 Solanum lycopersicum HOM05D004939 ORTHO05D005843 5.9e-11 72.0 259 25.9
Glyma.20G006600 Glycine max HOM05D004939 ORTHO05D005843 7.8e-11 71.6 135 34.1
QL02p016036 Quercus lobata HOM05D004939 ORTHO05D005843 7.8e-11 71.6 135 31.9
RcHm_v2.0_Chr7g0217371 Rosa chinensis HOM05D004939 ORTHO05D005843 7.8e-11 71.6 129 34.9
TAR625G0897 Trochodendron aralioides HOM05D004939 ORTHO05D005843 7.8e-11 71.6 34 79.4
MSTRG.22074 Avicennia marina HOM05D004939 ORTHO05D005843 1.0e-10 71.2 180 29.4
CAN.G1330.25 Capsicum annuum HOM05D004939 ORTHO05D005843 1.7e-10 70.5 259 25.5
Lalb_Chr17g0338141 Lupinus albus HOM05D004939 ORTHO05D005843 2.3e-10 70.1 149 31.5
Sabra02G0001700 Salix brachista HOM05D004939 ORTHO05D005843 2.3e-10 70.1 174 28.2
GSVIVG01013446001 Vitis vinifera HOM05D004939 ORTHO05D005843 2.3e-10 70.1 151 31.8
A05p29890 Brassica napus HOM05D004939 ORTHO05D005843 2.9e-10 69.7 37 91.9
BolC8t46884H Brassica oleracea HOM05D004939 ORTHO05D005843 2.9e-10 69.7 37 91.9
SGA_v2.0_scaffold227G43179 Striga asiatica HOM05D004939 ORTHO05D005843 2.9e-10 69.7 34 76.5
CsaV3_4G037720 Cucumis sativus L. HOM05D004939 ORTHO05D005843 3.8e-10 69.3 173 28.3
Psat6g131960 Pisum sativum HOM05D004939 ORTHO05D005843 6.6e-10 68.6 34 76.5
Oeu035772.5 Olea europaea HOM05D004939 ORTHO05D005843 1.5e-09 67.4 137 32.1
Phvul.003G009000 Phaseolus vulgaris HOM05D004939 ORTHO05D005843 1.5e-09 67.4 34 73.5
Sc02g0009340 Simmondsia chinensis HOM05D004939 ORTHO05D005843 1.5e-09 67.4 175 29.7
VMungo1215G1457 Vigna mungo HOM05D004939 ORTHO05D005843 1.5e-09 67.4 34 73.5
CANSAT11G2529 Cannabis sativa HOM05D004939 ORTHO05D005843 1.9e-09 67.0 251 25.9
MD00G1178400 Malus domestica HOM05D004939 ORTHO05D005843 1.9e-09 67.0 34 73.5
EL10Ac1g01845 Beta vulgaris HOM05D004939 ORTHO05D005843 2.5e-09 66.6 180 28.9
PSO017G2996 Papaver somniferum HOM05D004939 ORTHO05D005843 2.5e-09 66.6 34 73.5
PSO170G6093 Papaver somniferum HOM05D004939 ORTHO05D005843 2.5e-09 66.6 34 73.5
Sed0003879 Sechium edule HOM05D004939 ORTHO05D005843 3.3e-09 66.2 174 28.7
Os02g0193600 Oryza sativa ssp. japonica HOM05D004939 ORTHO05D005843 4.3e-09 65.9 34 73.5
ATR0605G152 Amborella trichopoda HOM05D004939 ORTHO05D005843 5.6e-09 65.5 174 27.0
MBI04_g18018_MAGBIO Magnolia biondii HOM05D004939 ORTHO05D005843 5.6e-09 65.5 151 30.5
Cpa.g.sc36.110 Carica papaya HOM05D004939 ORTHO05D005843 7.3e-09 65.1 126 31.7
MELO3C017066.2 Cucumis melo HOM05D004939 ORTHO05D005843 7.3e-09 65.1 174 27.0
ClCG11G019130 Citrullus lanatus HOM05D004939 ORTHO05D005843 9.5e-09 64.7 150 29.3
Zm00001eb236510 Zea mays HOM05D004939 ORTHO05D005843 1.2e-08 64.3 34 70.6
Aqoxy6G03042 Aquilegia oxysepala HOM05D004939 ORTHO05D005843 1.8e-07 60.5 153 29.4
SEGI_14150 Sequoiadendron giganteum HOM05D004939 ORTHO05D005843 2.3e-07 60.1 34 70.6
HPP92_020523 Vanilla planifolia HOM05D004939 ORTHO05D005843 5.7e-06 55.5 40 57.5


User provided reference genes

Program Settings