Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 1.2e-127 459.9 239 100.0
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 3.3e-114 415.2 239 90.4
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 3.3e-114 415.2 239 90.4
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 7.4e-114 414.1 239 90.0
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 3.7e-113 411.8 239 89.1
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 2.4e-112 409.1 239 89.1
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.5e-106 389.8 240 83.3
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 7.2e-101 370.9 240 79.6
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 1.5e-98 363.2 240 77.5
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 2.6e-98 362.5 237 77.2
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 3.0e-91 339.0 239 74.5
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 3.5e-87 325.5 230 71.7
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 3.8e-86 322.0 230 71.3
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 5.0e-86 321.6 230 71.3
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 1.1e-85 320.5 236 68.6
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 4.2e-85 318.5 230 70.4
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 9.5e-85 317.4 225 71.6
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 9.5e-85 317.4 225 71.6
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 9.5e-85 317.4 225 70.7
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.6e-84 316.6 225 71.6
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.0e-83 313.9 230 70.0
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.8e-83 313.2 230 69.6
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.8e-83 313.2 230 69.6
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 5.2e-83 311.6 230 69.1
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 1.5e-82 310.1 225 68.0
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 3.4e-82 308.9 236 65.3
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 9.8e-82 307.4 239 66.5
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 3.7e-81 305.4 223 67.7
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 4.9e-81 305.1 223 67.7
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 2.4e-80 302.8 234 64.1
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 5.4e-80 301.6 235 64.3
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 9.2e-80 300.8 235 64.3
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 1.2e-79 300.4 235 63.4
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.2e-79 300.4 239 62.8
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 1.6e-79 300.1 224 67.0
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 2.0e-79 299.7 225 66.2
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 2.7e-79 299.3 239 64.4
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 2.7e-79 299.3 223 65.9
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 4.5e-79 298.5 225 65.8
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 5.9e-79 298.1 230 62.6
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 7.8e-79 297.7 226 65.5
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 7.8e-79 297.7 226 64.2
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 7.8e-79 297.7 226 64.2
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 1.7e-78 296.6 225 64.9
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 2.3e-78 296.2 239 61.9
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 2.9e-78 295.8 225 66.2
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 2.9e-78 295.8 230 63.5
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 3.8e-78 295.4 210 71.4
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 3.8e-78 295.4 239 63.2
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 8.6e-78 294.3 239 61.9
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 1.9e-77 293.1 225 64.9
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 2.5e-77 292.7 239 62.8
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.5e-77 292.7 239 61.9
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 3.3e-77 292.4 263 58.9
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 4.3e-77 292.0 226 63.7
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 7.3e-77 291.2 239 61.1
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 9.5e-77 290.8 239 62.8
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 1.6e-76 290.0 236 63.1
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 1.6e-76 290.0 239 61.1
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 1.6e-76 290.0 225 64.4
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 2.1e-76 289.7 225 64.4
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 3.6e-76 288.9 230 62.2
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 3.6e-76 288.9 234 62.0
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 3.6e-76 288.9 225 63.1
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 3.6e-76 288.9 225 64.0
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 6.1e-76 288.1 235 63.8
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 8.0e-76 287.7 239 59.8
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 1.0e-75 287.3 231 61.9
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 3.0e-75 285.8 225 63.1
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 5.2e-75 285.0 230 62.6
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 2.6e-74 282.7 223 61.9
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 3.4e-74 282.3 236 61.0
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 9.8e-74 280.8 225 58.2
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 9.8e-74 280.8 201 69.7
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 1.7e-73 280.0 275 54.9
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 2.2e-73 279.6 236 60.6
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 2.2e-73 279.6 237 61.2
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 3.7e-73 278.9 201 68.7
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 4.1e-72 275.4 239 58.2
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 4.1e-72 275.4 224 62.9
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 5.4e-72 275.0 285 53.3
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 1.2e-71 273.9 210 66.7
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 6.0e-71 271.6 201 66.7
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 7.8e-71 271.2 225 60.9
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 3.0e-70 269.2 235 54.5
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.9e-70 268.9 234 61.1
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 2.5e-69 266.2 230 57.0
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 2.5e-69 266.2 236 58.5
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 5.6e-69 265.0 201 65.7
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 7.3e-69 264.6 233 61.4
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 7.3e-69 264.6 233 61.4
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.6e-68 262.3 209 62.7
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 4.7e-68 261.9 239 60.3
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 4.7e-68 261.9 214 62.1
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 2.6e-66 256.1 187 66.8
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 4.4e-66 255.4 237 56.5
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 4.4e-66 255.4 239 55.2
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 9.8e-66 254.2 197 62.9
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 3.7e-65 252.3 201 63.2
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 4.9e-65 251.9 200 64.0
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 7.0e-64 248.1 219 57.1
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 9.2e-64 247.7 262 51.9
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 9.2e-64 247.7 201 60.7
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.7e-63 246.1 218 58.3
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.5e-63 245.7 225 59.6
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.5e-63 245.7 236 52.1
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 4.6e-63 245.4 237 50.6
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 6.0e-63 245.0 225 56.4
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 7.8e-63 244.6 230 56.5
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 3.6e-60 235.7 223 51.6
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 1.4e-59 233.8 166 67.5
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 3.1e-59 232.6 177 66.7
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 2.6e-58 229.6 167 67.7
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.6e-58 229.6 176 60.8
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 1.3e-57 227.3 231 50.2
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.7e-57 226.9 135 85.2
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.4e-56 223.0 189 62.4
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 5.4e-56 221.9 151 76.2
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 1.0e-54 217.6 166 66.9
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 3.9e-54 215.7 219 50.7
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 5.6e-53 211.8 219 49.8
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 8.9e-51 204.5 230 50.0
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.0e-50 203.4 191 58.1
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 2.2e-49 199.9 147 68.0
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 6.4e-49 198.4 151 65.6
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.7e-47 193.0 201 53.2
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 1.1e-43 181.0 173 52.6
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 2.0e-42 176.8 150 66.7
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 2.0e-42 176.8 126 69.0
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 6.6e-38 161.8 100 83.0
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 2.9e-33 146.4 239 40.2
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 2.9e-33 146.4 103 69.9
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 1.4e-32 144.1 104 71.2
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 1.9e-32 143.7 235 38.3
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 1.6e-31 140.6 102 66.7
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 3.5e-31 139.4 106 63.2
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 1.1e-29 134.4 112 62.5
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 6.9e-27 125.2 206 36.4
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 4.2e-24 115.9 262 34.0
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 5.1e-22 109.0 216 31.5
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 3.7e-20 102.8 227 32.6
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 3.7e-20 102.8 227 32.6
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 3.7e-20 102.8 87 57.5
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 7.1e-16 88.6 94 56.4
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 2.3e-14 83.6 196 32.1
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 8.7e-14 81.6 49 79.6
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 4.3e-13 79.3 74 48.6
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 1.6e-12 77.4 50 82.0
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 3.7e-12 76.3 51 70.6
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.1e-11 74.7 79 48.1
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 1.4e-11 74.3 49 71.4
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 9.0e-11 71.6 51 66.7
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 2.9e-09 66.6 57 57.9
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 4.2e-08 62.8 53 58.5
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 9.4e-08 61.6 48 56.2


User provided reference genes

Program Settings