Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22495 Brassica carinata HOM05D000031 ORTHO05D010178 1.8e-48 195.7 104 100.0
Sp3g23230 Schrenkiella parvula HOM05D000031 ORTHO05D000030 1.6e-20 102.8 79 65.8
Sp5g20100 Schrenkiella parvula HOM05D000031 ORTHO05D000030 2.2e-17 92.4 108 52.8
CARHR062730 Cardamine hirsuta HOM05D000031 ORTHO05D010178 8.2e-17 90.5 111 49.5
CARHR073450 Cardamine hirsuta HOM05D000031 ORTHO05D000030 8.2e-17 90.5 104 52.9
AT1G79680 Arabidopsis thaliana HOM05D000031 ORTHO05D000030 1.4e-16 89.7 106 50.9
Thhalv10001848m.g Eutrema salsugineum HOM05D000031 ORTHO05D000030 1.8e-16 89.4 115 50.4
Carub.0002s1639 Capsella rubella HOM05D000031 ORTHO05D000030 2.4e-16 89.0 111 50.5
CARHR057010 Cardamine hirsuta HOM05D000031 ORTHO05D000030 9.0e-16 87.0 108 48.1
BcaC08g47527 Brassica carinata HOM05D000031 ORTHO05D000030 4.5e-15 84.7 108 49.1
BolC6t40367H Brassica oleracea HOM05D000031 ORTHO05D000030 4.5e-15 84.7 108 49.1
AL2G28900 Arabidopsis lyrata HOM05D000031 ORTHO05D000030 1.3e-14 83.2 111 46.8
AL3G52410 Arabidopsis lyrata HOM05D000031 ORTHO05D000030 2.9e-14 82.0 107 49.5
A07p44680 Brassica napus HOM05D000031 ORTHO05D000030 2.9e-14 82.0 109 49.5
BraA07t31977Z Brassica rapa HOM05D000031 ORTHO05D000030 2.9e-14 82.0 109 49.5
BcaB02g07231 Brassica carinata HOM05D000031 ORTHO05D000030 3.8e-14 81.6 106 45.3
C06p53510 Brassica napus HOM05D000031 ORTHO05D000030 1.4e-13 79.7 105 48.6
AL3G52440 Arabidopsis lyrata HOM05D000031 ORTHO05D000030 1.9e-13 79.3 107 48.6
Aa31csc388G30 Aethionema arabicum HOM05D000031 ORTHO05D000030 3.2e-13 78.6 102 48.0
A03p32710 Brassica napus HOM05D000031 ORTHO05D000030 1.2e-12 76.6 103 50.5
CARHR016610 Cardamine hirsuta HOM05D000031 ORTHO05D000030 1.6e-12 76.3 79 48.1
C06p29740 Brassica napus HOM05D000031 ORTHO05D000030 3.6e-12 75.1 106 41.5
BcaNung04172 Brassica carinata HOM05D000031 ORTHO05D000030 6.1e-12 74.3 108 42.6
BolC6t38133H Brassica oleracea HOM05D000031 ORTHO05D000030 7.9e-12 73.9 107 42.1
Sp1g14395 Schrenkiella parvula HOM05D000031 ORTHO05D000030 7.9e-12 73.9 102 42.2
A07p27010 Brassica napus HOM05D000031 ORTHO05D000030 1.8e-11 72.8 109 43.1
BraA07t30344Z Brassica rapa HOM05D000031 ORTHO05D000030 1.8e-11 72.8 111 43.2
THA.LOC104813168 Tarenaya hassleriana HOM05D000031 ORTHO05D000030 1.8e-11 72.8 95 46.3
C03p39810 Brassica napus HOM05D000031 ORTHO05D000030 2.3e-11 72.4 103 48.5
C06p29720 Brassica napus HOM05D000031 ORTHO05D000030 2.3e-11 72.4 106 40.6
Thhalv10006943m.g Eutrema salsugineum HOM05D000031 ORTHO05D000030 2.3e-11 72.4 77 48.1
BraA07t31976Z Brassica rapa HOM05D000031 ORTHO05D000030 3.0e-11 72.0 92 44.6
BraA08t35566Z Brassica rapa HOM05D000031 ORTHO05D000030 3.0e-11 72.0 107 46.7
THA.LOC104799065 Tarenaya hassleriana HOM05D000031 ORTHO05D000030 3.9e-11 71.6 103 43.7
AT1G79670 Arabidopsis thaliana HOM05D000031 ORTHO05D000030 6.7e-11 70.9 92 42.4
BcaB03g13465 Brassica carinata HOM05D000031 ORTHO05D000030 8.8e-11 70.5 105 44.8
BraA03t12440Z Brassica rapa HOM05D000031 ORTHO05D000030 8.8e-11 70.5 103 47.6
BraA09t41475Z Brassica rapa HOM05D000031 ORTHO05D000030 8.8e-11 70.5 102 40.2
AT1G69730 Arabidopsis thaliana HOM05D000031 ORTHO05D000030 1.1e-10 70.1 117 42.7
C08p44620 Brassica napus HOM05D000031 ORTHO05D000030 1.1e-10 70.1 102 41.2
BolC8t52008H Brassica oleracea HOM05D000031 ORTHO05D000030 1.1e-10 70.1 102 41.2
AL1G28290 Arabidopsis lyrata HOM05D000031 ORTHO05D000030 1.5e-10 69.7 100 43.0
BcaB02g07233 Brassica carinata HOM05D000031 ORTHO05D000030 1.5e-10 69.7 108 39.8
Carub.0001s1591 Capsella rubella HOM05D000031 ORTHO05D000030 1.5e-10 69.7 102 42.2
AT1G16130 Arabidopsis thaliana HOM05D000031 ORTHO05D000030 2.5e-10 68.9 105 43.8
AT1G16160 Arabidopsis thaliana HOM05D000031 ORTHO05D000030 2.5e-10 68.9 80 45.0
CARHR062760 Cardamine hirsuta HOM05D000031 ORTHO05D000030 2.5e-10 68.9 111 42.3
A08p36640 Brassica napus HOM05D000031 ORTHO05D000030 4.3e-10 68.2 107 44.9
A09p61010 Brassica napus HOM05D000031 ORTHO05D000030 4.3e-10 68.2 78 46.2
BolC8t52007H Brassica oleracea HOM05D000031 ORTHO05D000030 4.3e-10 68.2 73 50.7
BraA09t41474Z Brassica rapa HOM05D000031 ORTHO05D000030 4.3e-10 68.2 78 46.2
BcaC05g25827 Brassica carinata HOM05D001555 ORTHO05D001616 5.7e-10 67.8 103 44.7
C08p44610 Brassica napus HOM05D000031 ORTHO05D000030 5.7e-10 67.8 85 45.9
AL1G28280 Arabidopsis lyrata HOM05D000031 ORTHO05D000030 9.7e-10 67.0 98 41.8
A07p44670 Brassica napus HOM05D000031 ORTHO05D000030 9.7e-10 67.0 92 41.3
CARHR019980 Cardamine hirsuta HOM05D000031 ORTHO05D000030 9.7e-10 67.0 105 42.9
BcaB02g06595 Brassica carinata HOM05D000031 ORTHO05D000030 1.3e-09 66.6 103 41.7
BcaB07g31947 Brassica carinata HOM05D000031 ORTHO05D010178 1.3e-09 66.6 95 42.1
BcaB07g31948 Brassica carinata HOM05D001555 ORTHO05D010178 1.3e-09 66.6 106 42.5
BcaB07g31951 Brassica carinata HOM05D000031 ORTHO05D000030 1.3e-09 66.6 106 42.5
BcaB03g14504 Brassica carinata HOM05D000031 ORTHO05D000030 1.7e-09 66.2 85 44.7
Carub.0001s1589 Capsella rubella HOM05D000031 ORTHO05D000030 2.2e-09 65.9 78 42.3
CARHR016620 Cardamine hirsuta HOM05D000031 ORTHO05D000030 2.2e-09 65.9 101 40.6
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 2.8e-09 65.5 79 43.0
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 2.8e-09 65.5 79 43.0
A09p61020 Brassica napus HOM05D000031 ORTHO05D000030 3.7e-09 65.1 102 38.2
Thhalv10018175m.g Eutrema salsugineum HOM05D000031 ORTHO05D000030 3.7e-09 65.1 94 40.4
AL1G32000 Arabidopsis lyrata HOM05D000031 ORTHO05D000030 4.8e-09 64.7 106 45.3
Carub.0002s1640 Capsella rubella HOM05D000031 ORTHO05D000030 4.8e-09 64.7 92 44.6
AL2G40360 Arabidopsis lyrata HOM05D000031 ORTHO05D000030 6.3e-09 64.3 72 44.4
AT1G16120 Arabidopsis thaliana HOM05D000031 ORTHO05D000030 6.3e-09 64.3 74 45.9
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 6.3e-09 64.3 79 40.5
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 6.3e-09 64.3 79 40.5
BcaC05g25599 Brassica carinata HOM05D000031 ORTHO05D010178 1.1e-08 63.5 102 39.2
Aa31LG5G12540 Aethionema arabicum HOM05D000084 ORTHO05D012289 1.4e-08 63.2 104 41.3
BraA08t35567Z Brassica rapa HOM05D000031 ORTHO05D000030 1.4e-08 63.2 80 43.8
AT1G16150 Arabidopsis thaliana HOM05D000031 ORTHO05D000030 1.8e-08 62.8 107 38.3
BolC5t30486H Brassica oleracea HOM05D000031 ORTHO05D000030 1.8e-08 62.8 106 45.3
BraA06t24666Z Brassica rapa HOM05D000031 ORTHO05D001616 1.8e-08 62.8 106 39.6
BcaB07g31952 Brassica carinata HOM05D000031 ORTHO05D000030 2.4e-08 62.4 104 39.4
C08p01580 Brassica napus HOM05D000031 ORTHO05D000030 2.4e-08 62.4 80 43.8
BolC2t09683H Brassica oleracea HOM05D000031 ORTHO05D000030 2.4e-08 62.4 92 38.0
BolC8t46961H Brassica oleracea HOM05D000031 ORTHO05D000030 2.4e-08 62.4 80 43.8
BcaC01g04499 Brassica carinata HOM05D000031 ORTHO05D000030 3.1e-08 62.0 105 43.8
BolC3t16244H Brassica oleracea HOM05D001730 ORTHO05D002202 3.1e-08 62.0 105 43.8
Carub.0001s1592 Capsella rubella HOM05D000031 ORTHO05D000030 3.1e-08 62.0 67 49.3
Thhalv10006827m.g Eutrema salsugineum HOM05D000031 ORTHO05D000030 3.1e-08 62.0 108 41.7
BcaC07g36871 Brassica carinata HOM05D000031 ORTHO05D000030 4.1e-08 61.6 80 43.8
C07p58440 Brassica napus HOM05D000031 ORTHO05D039454 4.1e-08 61.6 59 54.2
THA.LOC104808164 Tarenaya hassleriana HOM05D000031 ORTHO05D000030 4.1e-08 61.6 105 42.9
C05p17810 Brassica napus HOM05D000031 ORTHO05D000030 5.3e-08 61.2 106 45.3
BcaB03g12914 Brassica carinata HOM05D000031 ORTHO05D000030 6.9e-08 60.8 105 41.0
BolC5t30162H Brassica oleracea HOM05D000031 ORTHO05D000030 6.9e-08 60.8 102 38.2
CARHR004290 Cardamine hirsuta HOM05D000031 ORTHO05D000030 6.9e-08 60.8 107 41.1
Aa31LG7G660 Aethionema arabicum HOM05D000031 ORTHO05D000030 9.1e-08 60.5 91 45.1
BcaB02g06593 Brassica carinata HOM05D000031 ORTHO05D000030 9.1e-08 60.5 52 57.7
THA.LOC104808165 Tarenaya hassleriana HOM05D000031 ORTHO05D000030 9.1e-08 60.5 102 39.2
BcaB03g14448 Brassica carinata HOM05D000031 ORTHO05D000030 1.2e-07 60.1 77 42.9
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 1.2e-07 60.1 70 45.7
BcaNung03417 Brassica carinata HOM05D000031 ORTHO05D000030 1.2e-07 60.1 59 52.5
CARHR157870 Cardamine hirsuta HOM05D000031 ORTHO05D000030 1.2e-07 60.1 109 40.4
AL1G28270 Arabidopsis lyrata HOM05D000031 ORTHO05D000030 1.5e-07 59.7 64 51.6
BcaB02g06592 Brassica carinata HOM05D000031 ORTHO05D000030 1.5e-07 59.7 101 42.6
BcaB03g12913 Brassica carinata HOM05D000031 ORTHO05D000030 1.5e-07 59.7 106 39.6
A08p29800 Brassica napus HOM05D000031 ORTHO05D000030 1.5e-07 59.7 106 40.6
BolC8t51822H Brassica oleracea HOM05D000031 ORTHO05D000030 1.5e-07 59.7 102 41.2
BraA08t34915Z Brassica rapa HOM05D000031 ORTHO05D000030 1.5e-07 59.7 106 40.6
Carub.0007s0943 Capsella rubella HOM05D000031 ORTHO05D000030 1.5e-07 59.7 59 49.2
Aa31LG4G1410 Aethionema arabicum HOM05D000031 ORTHO05D000030 2.0e-07 59.3 107 38.3
Aa31LG7G680 Aethionema arabicum HOM05D000031 ORTHO05D000030 2.0e-07 59.3 105 40.0
BcaNung03412 Brassica carinata HOM05D000031 ORTHO05D010178 2.0e-07 59.3 59 50.8
A01p07110 Brassica napus HOM05D000031 ORTHO05D000030 2.0e-07 59.3 110 40.0
BraA01t00663Z Brassica rapa HOM05D000031 ORTHO05D000030 2.0e-07 59.3 110 40.0
THA.LOC104818194 Tarenaya hassleriana HOM05D000031 ORTHO05D000030 2.0e-07 59.3 93 45.2
AT4G31110 Arabidopsis thaliana HOM05D000031 ORTHO05D000030 2.6e-07 58.9 59 49.2
BcaB02g06597 Brassica carinata HOM05D000031 ORTHO05D000030 2.6e-07 58.9 72 40.3
BcaB07g31954 Brassica carinata HOM05D000031 ORTHO05D010178 2.6e-07 58.9 102 37.3
AT1G19390 Arabidopsis thaliana HOM05D000031 ORTHO05D000030 3.4e-07 58.5 107 39.3
Aa31LG7G700 Aethionema arabicum HOM05D000031 ORTHO05D000030 4.5e-07 58.2 75 49.3
AL1G30260 Arabidopsis lyrata HOM05D000031 ORTHO05D000030 4.5e-07 58.2 77 41.6
BcaB07g31950 Brassica carinata HOM05D000031 ORTHO05D010178 4.5e-07 58.2 102 36.3
C06p53500 Brassica napus HOM05D000031 ORTHO05D000030 4.5e-07 58.2 59 49.2
BolC1t00774H Brassica oleracea HOM05D000031 ORTHO05D000030 4.5e-07 58.2 110 38.2
Carub.0001s1898 Capsella rubella HOM05D000031 ORTHO05D000030 4.5e-07 58.2 103 42.7
CARHR073440 Cardamine hirsuta HOM05D000031 ORTHO05D000030 4.5e-07 58.2 94 39.4
Thecc.04G189200 Theobroma cacao HOM05D000031 ORTHO05D000030 4.5e-07 58.2 81 38.3
BcaB03g14446 Brassica carinata HOM05D000031 ORTHO05D010178 5.9e-07 57.8 102 40.2
BcaB03g14447 Brassica carinata HOM05D000031 ORTHO05D010178 5.9e-07 57.8 102 40.2
BcaC07g41255 Brassica carinata HOM05D000031 ORTHO05D000030 5.9e-07 57.8 102 40.2
C08p42610 Brassica napus HOM05D000031 ORTHO05D010178 5.9e-07 57.8 102 40.2
BolC8t49570H Brassica oleracea HOM05D000031 ORTHO05D000030 5.9e-07 57.8 88 39.8
CARHR018530 Cardamine hirsuta HOM05D000031 ORTHO05D000030 5.9e-07 57.8 73 43.8
BcaB03g13466 Brassica carinata HOM05D000031 ORTHO05D000030 7.7e-07 57.4 88 39.8
BcaNung02724 Brassica carinata HOM05D000031 ORTHO05D039454 7.7e-07 57.4 59 54.2
A09p59350 Brassica napus HOM05D000031 ORTHO05D000030 7.7e-07 57.4 101 38.6
C08p19460 Brassica napus HOM05D000031 ORTHO05D010178 7.7e-07 57.4 88 39.8
BolC7t46297H Brassica oleracea HOM05D000031 ORTHO05D000030 7.7e-07 57.4 59 54.2
COL.COLO4_07318 Corchorus olitorius HOM05D000031 ORTHO05D010178 7.7e-07 57.4 86 39.5
Thhalv10009310m.g Eutrema salsugineum HOM05D000031 ORTHO05D000030 7.7e-07 57.4 105 38.1
MBI15_g43262_MAGBIO Magnolia biondii HOM05D000031 ORTHO05D000030 7.7e-07 57.4 81 39.5
AT4G31100 Arabidopsis thaliana HOM05D000031 ORTHO05D000030 1.3e-06 56.6 59 47.5
BcaC03g15916 Brassica carinata HOM05D000031 ORTHO05D000030 1.3e-06 56.6 95 37.9
BcaC09g51893 Brassica carinata HOM05D000031 ORTHO05D000030 1.3e-06 56.6 111 38.7
BcaNung03415 Brassica carinata HOM05D000031 ORTHO05D000030 1.3e-06 56.6 59 49.2
BolC2t09681H Brassica oleracea HOM05D000031 ORTHO05D000030 1.3e-06 56.6 95 37.9
Carub.0003s3006 Capsella rubella HOM05D000031 ORTHO05D000030 1.3e-06 56.6 52 57.7
Sp7g28980 Schrenkiella parvula HOM05D000031 ORTHO05D000030 1.3e-06 56.6 59 45.8
AT1G17910 Arabidopsis thaliana HOM05D000031 ORTHO05D000030 1.7e-06 56.2 72 41.7
BcaC05g25602 Brassica carinata HOM05D000031 ORTHO05D000030 1.7e-06 56.2 103 35.9
Carub.0001s2511 Capsella rubella HOM05D000031 ORTHO05D000030 1.7e-06 56.2 73 42.5
CARHR018520 Cardamine hirsuta HOM05D000031 ORTHO05D000030 1.7e-06 56.2 75 42.7
CiPaw.15G026200 Carya illinoinensis HOM05D000031 ORTHO05D000030 1.7e-06 56.2 75 50.7
CiPaw.15G026900 Carya illinoinensis HOM05D000031 ORTHO05D000030 1.7e-06 56.2 75 50.7
TAR628G0429 Trochodendron aralioides HOM05D000031 ORTHO05D000030 1.7e-06 56.2 52 50.0
BcaC08g47526 Brassica carinata HOM05D000031 ORTHO05D000030 2.2e-06 55.8 52 51.9
C05p14300 Brassica napus HOM05D000031 ORTHO05D000030 2.2e-06 55.8 105 35.2
BraA09t41317Z Brassica rapa HOM05D000031 ORTHO05D000030 2.2e-06 55.8 104 40.4
RcHm_v2.0_Chr2g0152591 Rosa chinensis HOM05D000031 ORTHO05D000030 2.2e-06 55.8 52 50.0
CARHR016600 Cardamine hirsuta HOM05D000031 ORTHO05D000030 2.9e-06 55.5 57 54.4
CARHR239000 Cardamine hirsuta HOM05D000031 ORTHO05D000030 2.9e-06 55.5 80 41.2
HanXRQChr01g0000861 Helianthus annuus HOM05D000031 ORTHO05D000030 2.9e-06 55.5 59 49.2
Sp1g14400 Schrenkiella parvula HOM05D000031 ORTHO05D000030 2.9e-06 55.5 72 40.3
BcaC09g51894 Brassica carinata HOM05D000031 ORTHO05D000030 3.8e-06 55.1 111 38.7
CiPaw.04G073800 Carya illinoinensis HOM05D000031 ORTHO05D000030 3.8e-06 55.1 101 36.6
BcaNung01545 Brassica carinata HOM05D000031 ORTHO05D000030 5.0e-06 54.7 111 36.0
Migut.L00751 Erythranthe guttata HOM05D000031 ORTHO05D000030 6.5e-06 54.3 52 53.8
Prupe.3G181000 Prunus persica HOM05D000031 ORTHO05D000030 6.5e-06 54.3 52 50.0
RcHm_v2.0_Chr7g0221871 Rosa chinensis HOM05D000031 ORTHO05D000030 6.5e-06 54.3 102 34.3
VMungo1309G1564 Vigna mungo HOM05D000031 ORTHO05D000030 6.5e-06 54.3 52 53.8
A08p36650 Brassica napus HOM05D000031 ORTHO05D000030 8.5e-06 53.9 76 39.5
BolC5t30161H Brassica oleracea HOM05D000031 ORTHO05D000030 8.5e-06 53.9 52 50.0
CiPaw.04G074700 Carya illinoinensis HOM05D000031 ORTHO05D000030 8.5e-06 53.9 102 38.2
CiPaw.04G076000 Carya illinoinensis HOM05D000031 ORTHO05D000030 8.5e-06 53.9 101 35.6
FAN02G0309 Fragaria x ananassa HOM05D000031 ORTHO05D000030 8.5e-06 53.9 53 47.2
Manes.01G013225 Manihot esculenta HOM05D000031 ORTHO05D000030 8.5e-06 53.9 52 51.9
PSO339G3109 Papaver somniferum HOM05D000031 ORTHO05D000030 8.5e-06 53.9 52 50.0
QL11p048495 Quercus lobata HOM05D000031 ORTHO05D000030 8.5e-06 53.9 52 50.0


User provided reference genes

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