Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 1.4e-60 236.1 124 100.0
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 9.4e-28 127.1 181 50.8
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 1.6e-27 126.3 181 50.3
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 1.6e-27 126.3 181 50.3
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 3.6e-27 125.2 181 49.7
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 3.6e-27 125.2 181 49.7
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 2.3e-26 122.5 181 49.2
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 3.0e-26 122.1 164 52.4
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 2.6e-25 119.0 181 49.2
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 4.4e-25 118.2 181 48.6
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 9.1e-23 110.5 166 48.8
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 5.9e-22 107.8 188 46.3
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 5.9e-22 107.8 173 47.4
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.7e-22 107.5 120 57.5
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.0e-21 107.1 188 45.7
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.0e-21 107.1 188 45.7
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 2.2e-21 105.9 188 45.7
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 1.9e-20 102.8 188 45.7
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 9.4e-20 100.5 167 44.9
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 4.0e-18 95.1 190 41.1
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 4.4e-17 91.7 195 41.5
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 5.7e-17 91.3 189 40.2
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 1.3e-16 90.1 190 40.5
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 1.7e-16 89.7 190 39.5
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.7e-16 89.7 189 39.7
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.7e-16 89.7 189 39.7
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 1.7e-16 89.7 189 40.2
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 1.7e-16 89.7 189 40.7
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.2e-16 89.4 190 40.5
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 2.2e-16 89.4 189 39.2
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 2.8e-16 89.0 189 39.7
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 4.8e-16 88.2 179 41.9
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 6.3e-16 87.8 189 39.2
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 6.3e-16 87.8 190 38.9
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 6.3e-16 87.8 190 40.0
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 6.3e-16 87.8 189 39.7
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 6.3e-16 87.8 190 41.1
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 8.3e-16 87.4 190 40.5
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 1.1e-15 87.0 188 38.8
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.1e-15 87.0 189 38.6
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.1e-15 87.0 189 39.7
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.1e-15 87.0 189 39.7
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 1.4e-15 86.7 189 39.7
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.4e-15 86.7 189 39.7
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.4e-15 86.7 190 40.5
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 1.8e-15 86.3 190 38.9
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.4e-15 85.9 189 39.2
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 2.4e-15 85.9 190 38.4
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 3.1e-15 85.5 190 37.4
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 3.1e-15 85.5 190 37.4
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 3.1e-15 85.5 75 70.7
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 3.1e-15 85.5 199 38.7
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.1e-15 85.1 189 38.6
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 4.1e-15 85.1 190 38.4
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 5.4e-15 84.7 190 40.0
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 7.0e-15 84.3 189 39.2
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 9.1e-15 84.0 190 39.5
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 1.2e-14 83.6 189 38.6
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 1.2e-14 83.6 169 38.5
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 1.6e-14 83.2 188 38.3
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 1.6e-14 83.2 189 37.0
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 2.0e-14 82.8 191 38.2
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 2.0e-14 82.8 192 38.0
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 2.7e-14 82.4 183 37.7
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 2.7e-14 82.4 190 39.5
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 2.7e-14 82.4 189 38.6
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 3.5e-14 82.0 190 35.8
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 4.5e-14 81.6 190 38.4
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 4.5e-14 81.6 191 37.2
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 4.5e-14 81.6 188 38.3
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 5.9e-14 81.3 190 40.0
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 7.7e-14 80.9 191 37.2
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 7.7e-14 80.9 192 37.0
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 7.7e-14 80.9 189 37.6
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 1.0e-13 80.5 191 37.7
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 1.0e-13 80.5 190 39.5
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 1.3e-13 80.1 190 37.9
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 1.3e-13 80.1 190 37.9
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 1.3e-13 80.1 190 37.9
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 1.7e-13 79.7 189 38.1
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 1.7e-13 79.7 190 37.4
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 1.7e-13 79.7 194 36.6
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 2.2e-13 79.3 191 37.2
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 2.9e-13 79.0 190 35.8
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 3.8e-13 78.6 189 39.7
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 5.0e-13 78.2 189 35.4
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 6.5e-13 77.8 190 36.8
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 6.5e-13 77.8 190 36.3
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 8.5e-13 77.4 190 37.9
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 1.1e-12 77.0 194 36.1
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.9e-12 76.3 190 37.4
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 3.2e-12 75.5 183 37.2
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 5.5e-12 74.7 189 37.0
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 7.2e-12 74.3 195 34.4
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 9.4e-12 73.9 190 36.3
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 3.6e-11 72.0 197 34.0
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 6.1e-11 71.2 189 34.9
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 6.1e-11 71.2 188 36.7
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 8.0e-11 70.9 46 82.6
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 1.8e-10 69.7 194 35.1
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 2.0e-09 66.2 189 33.9
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 2.0e-09 66.2 189 33.9
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 3.4e-09 65.5 176 35.2
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 3.4e-09 65.5 189 33.3
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 7.5e-09 64.3 203 31.0
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 9.8e-09 63.9 190 32.6
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 1.7e-08 63.2 203 31.5
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 2.8e-08 62.4 40 77.5
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 2.8e-08 62.4 40 77.5
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.3e-08 61.2 40 72.5
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.3e-08 61.2 40 72.5
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.3e-08 61.2 40 72.5
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.8e-07 59.7 40 70.0
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 2.4e-07 59.3 40 72.5
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 5.4e-07 58.2 193 31.1
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 5.4e-07 58.2 40 70.0
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 5.4e-07 58.2 105 36.2
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 7.0e-07 57.8 40 72.5
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 9.2e-07 57.4 170 33.5
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 1.2e-06 57.0 194 29.9
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 2.0e-06 56.2 40 67.5
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 4.5e-06 55.1 33 75.8
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 5.9e-06 54.7 92 44.6
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 5.9e-06 54.7 40 65.0


User provided reference genes

Program Settings