Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 1.8e-81 305.8 151 100.0
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 1.6e-74 282.7 152 92.8
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 2.4e-73 278.9 152 92.1
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 4.4e-72 274.6 154 90.3
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 4.4e-72 274.6 154 90.3
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 1.2e-69 266.5 153 88.9
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 4.6e-69 264.6 151 88.1
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 1.7e-68 262.7 151 90.1
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 1.5e-67 259.6 148 86.5
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 1.9e-67 259.2 152 87.5
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 3.3e-67 258.5 153 85.6
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 2.8e-66 255.4 153 85.0
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 4.8e-66 254.6 151 86.1
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 6.2e-66 254.2 153 86.3
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 1.8e-65 252.7 152 86.8
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 3.1e-65 251.9 158 84.2
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 1.5e-64 249.6 151 83.4
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 1.0e-60 236.9 145 82.1
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 7.4e-59 230.7 165 77.0
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.1e-57 226.9 147 76.9
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.5e-56 223.0 155 72.3
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.7e-55 219.5 151 71.5
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 1.4e-54 216.5 151 79.5
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.1e-49 200.3 157 63.1
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 4.0e-49 198.4 160 66.2
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 9.0e-49 197.2 161 64.6
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.0e-47 193.7 158 62.0
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 1.7e-47 193.0 134 67.9
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 2.2e-47 192.6 154 63.6
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 1.9e-46 189.5 162 59.9
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 1.9e-46 189.5 158 61.4
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 2.5e-46 189.1 158 61.4
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.7e-45 185.7 158 60.1
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 3.5e-45 185.3 158 62.7
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 7.9e-45 184.1 137 64.2
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 1.0e-44 183.7 151 60.9
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 1.3e-44 183.3 132 68.2
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 3.0e-44 182.2 158 62.0
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 5.1e-44 181.4 158 62.7
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 6.7e-44 181.0 152 59.9
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 8.7e-44 180.6 160 60.6
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 8.7e-44 180.6 133 67.7
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 1.5e-43 179.9 156 59.0
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 3.3e-43 178.7 146 62.3
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 4.3e-43 178.3 152 64.5
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 5.7e-43 177.9 127 67.7
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 5.7e-43 177.9 158 60.1
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 5.7e-43 177.9 158 60.1
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 5.7e-43 177.9 158 60.1
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 5.7e-43 177.9 163 60.7
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 5.7e-43 177.9 119 69.7
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 5.7e-43 177.9 156 59.0
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 3.7e-42 175.3 156 60.3
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 3.7e-42 175.3 141 61.7
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 8.2e-42 174.1 120 70.8
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 8.2e-42 174.1 156 62.8
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 1.1e-41 173.7 144 60.4
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 1.1e-41 173.7 137 62.0
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 1.4e-41 173.3 161 58.4
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 2.4e-41 172.6 133 65.4
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 5.3e-41 171.4 166 56.6
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 5.3e-41 171.4 169 55.0
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 5.3e-41 171.4 149 60.4
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 9.0e-41 170.6 155 60.0
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 9.0e-41 170.6 136 64.0
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 4.5e-40 168.3 137 60.6
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 7.6e-40 167.5 147 59.9
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 7.6e-40 167.5 144 60.4
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.0e-39 167.2 157 56.1
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.7e-39 166.4 146 60.3
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 1.7e-39 166.4 160 59.4
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 2.9e-39 165.6 149 55.0
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 3.8e-39 165.2 139 59.0
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 5.0e-39 164.9 143 59.4
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 5.0e-39 164.9 145 60.0
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 6.5e-39 164.5 111 68.5
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 1.1e-38 163.7 154 56.5
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 1.1e-38 163.7 157 55.4
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 1.4e-38 163.3 154 56.5
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 3.2e-38 162.2 96 74.0
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 3.2e-38 162.2 93 73.1
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 4.2e-38 161.8 141 57.4
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 5.5e-38 161.4 136 60.3
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 5.5e-38 161.4 147 57.8
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 7.2e-38 161.0 95 73.7
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 9.3e-38 160.6 92 78.3
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.2e-37 160.2 149 58.4
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 1.6e-37 159.8 100 73.0
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 4.6e-37 158.3 152 56.6
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 6.1e-37 157.9 87 78.2
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 7.9e-37 157.5 156 56.4
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 7.9e-37 157.5 151 57.0
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 7.9e-37 157.5 132 53.8
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.0e-36 157.1 157 56.7
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 1.0e-36 157.1 131 62.6
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 1.0e-36 157.1 104 70.2
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 1.8e-36 156.4 92 72.8
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 1.8e-36 156.4 93 73.1
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 2.3e-36 156.0 89 77.5
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 2.3e-36 156.0 90 76.7
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 2.3e-36 156.0 141 58.2
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 3.0e-36 155.6 157 56.1
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 8.7e-36 154.1 89 76.4
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 1.1e-35 153.7 146 53.4
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 1.9e-35 152.9 79 83.5
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 1.9e-35 152.9 137 56.2
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 5.7e-35 151.4 131 58.8
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 1.3e-34 150.2 148 48.6
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 2.8e-34 149.1 104 68.3
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 6.3e-34 147.9 139 56.8
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 8.2e-34 147.5 145 54.5
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 1.4e-33 146.7 77 83.1
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 6.9e-33 144.4 145 53.1
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 4.5e-32 141.7 111 62.2
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 8.5e-31 137.5 135 54.8
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 1.8e-28 129.8 129 51.9
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 5.1e-28 128.3 81 70.4
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.3e-26 123.6 159 45.3
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 4.8e-26 121.7 103 60.2
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 8.2e-26 120.9 147 47.6
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.8e-25 119.8 90 64.4
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 9.1e-25 117.5 54 88.9
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 2.6e-24 115.9 77 75.3
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 2.6e-24 115.9 113 55.8
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 2.6e-24 115.9 109 56.0
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.7e-23 113.2 52 90.4
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 2.9e-23 112.5 73 69.9
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 6.1e-21 104.8 82 53.7
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 7.9e-21 104.4 79 62.0
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 2.3e-20 102.8 135 44.4
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 2.0e-19 99.8 100 51.0
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 4.8e-18 95.1 96 47.9
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 2.0e-16 89.7 134 41.0
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 1.1e-14 84.0 98 49.0
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 4.2e-14 82.0 152 37.5
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 4.0e-12 75.5 85 41.2
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 1.7e-10 70.1 83 48.2
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 4.8e-10 68.6 44 63.6
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 8.2e-10 67.8 43 65.1
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 8.2e-10 67.8 93 38.7
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 2.2e-07 59.7 41 61.0
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 8.5e-07 57.8 49 53.1


User provided reference genes

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