Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 5.5e-92 340.9 166 100.0
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 2.3e-85 318.9 162 95.7
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 2.9e-85 318.5 162 95.7
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 3.9e-85 318.2 162 95.7
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 3.9e-85 318.2 162 95.7
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 1.1e-84 316.6 162 95.7
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 3.3e-84 315.1 162 94.4
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 4.3e-84 314.7 162 94.4
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 4.3e-84 314.7 162 95.7
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 5.6e-84 314.3 162 93.8
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 1.6e-83 312.8 162 95.1
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 1.6e-83 312.8 162 93.2
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 8.3e-80 300.4 162 88.3
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 8.3e-80 300.4 152 95.4
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 8.3e-80 300.4 152 95.4
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 7.0e-79 297.4 152 95.4
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 9.2e-79 297.0 151 95.4
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 1.9e-76 289.3 162 82.7
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 1.9e-71 272.7 162 77.2
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.9e-71 272.7 162 77.2
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 4.1e-71 271.6 162 76.5
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 2.1e-70 269.2 162 75.9
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 2.7e-70 268.9 162 77.2
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 6.0e-70 267.7 162 76.5
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 2.3e-69 265.8 162 74.7
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 3.9e-69 265.0 162 74.7
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 1.5e-68 263.1 162 73.5
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 3.3e-68 261.9 162 73.5
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 4.3e-68 261.5 162 75.9
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 1.6e-67 259.6 162 73.5
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 1.6e-67 259.6 162 73.5
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 2.8e-67 258.8 162 74.1
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 4.7e-67 258.1 162 73.5
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 4.7e-67 258.1 162 72.2
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 6.2e-67 257.7 162 71.6
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 6.2e-67 257.7 162 71.6
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 1.4e-66 256.5 162 72.2
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 2.3e-66 255.8 162 72.2
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 8.9e-66 253.8 162 82.1
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 8.9e-66 253.8 162 72.2
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 2.0e-65 252.7 147 76.2
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 2.0e-65 252.7 162 71.0
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 2.0e-65 252.7 159 73.6
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 2.0e-65 252.7 159 72.3
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 2.6e-65 252.3 162 72.2
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 4.4e-65 251.5 162 72.2
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 4.4e-65 251.5 159 73.0
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 5.8e-65 251.1 162 71.0
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 9.9e-65 250.4 162 71.0
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 1.7e-64 249.6 162 71.6
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 2.9e-64 248.8 159 73.0
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 2.9e-64 248.8 162 69.1
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 3.7e-64 248.4 162 69.1
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 4.9e-64 248.1 159 73.0
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.1e-63 246.9 162 71.0
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 1.4e-63 246.5 162 71.0
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 1.4e-63 246.5 150 75.3
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 1.9e-63 246.1 162 69.1
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 2.4e-63 245.7 151 74.2
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 2.4e-63 245.7 159 71.7
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 3.2e-63 245.4 159 71.1
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 7.1e-63 244.2 162 67.9
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.2e-62 243.4 151 73.5
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 1.6e-62 243.0 162 69.1
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 1.0e-61 240.4 147 72.8
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 1.3e-61 240.0 153 71.9
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 1.3e-61 240.0 159 67.3
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 5.1e-61 238.0 159 68.6
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 8.6e-61 237.3 155 70.3
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 1.5e-60 236.5 159 69.2
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 1.9e-60 236.1 155 69.7
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.5e-60 235.7 143 72.7
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 4.3e-60 235.0 153 69.3
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 5.6e-60 234.6 161 65.8
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 5.6e-60 234.6 153 69.9
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 9.6e-60 233.8 139 71.9
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 9.6e-60 233.8 146 73.3
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 9.6e-60 233.8 146 73.3
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 9.6e-60 233.8 143 72.0
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.2e-59 233.4 138 74.6
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.6e-59 233.0 159 67.9
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 1.6e-59 233.0 163 65.6
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 4.7e-59 231.5 161 66.5
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 4.7e-59 231.5 161 66.5
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 6.2e-59 231.1 161 64.0
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 1.1e-58 230.3 161 65.8
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 1.4e-58 229.9 161 65.2
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 1.8e-58 229.6 161 65.8
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 2.4e-58 229.2 139 69.8
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 5.2e-58 228.0 161 65.2
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 5.2e-58 228.0 147 68.7
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 6.8e-58 227.6 145 68.3
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 8.9e-58 227.3 159 62.9
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 8.9e-58 227.3 139 71.9
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.2e-57 226.9 159 62.3
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 1.5e-57 226.5 139 70.5
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 1.5e-57 226.5 139 70.5
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 2.6e-57 225.7 163 63.2
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 3.4e-57 225.3 135 71.1
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 5.8e-57 224.6 159 66.7
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 7.6e-57 224.2 162 64.2
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 2.2e-56 222.6 177 59.3
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 1.1e-55 220.3 157 65.0
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 1.4e-55 219.9 157 63.7
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 2.4e-55 219.2 159 61.6
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 3.2e-55 218.8 139 67.6
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 2.7e-54 215.7 153 62.1
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.7e-53 213.0 162 59.9
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.7e-53 213.0 138 66.7
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 2.3e-53 212.6 162 61.7
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 3.0e-53 212.2 135 66.7
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 1.1e-52 210.3 135 68.1
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 1.5e-52 209.9 162 60.5
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 2.5e-52 209.1 159 62.3
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.3e-52 208.8 123 76.4
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 2.1e-46 189.5 108 80.6
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 5.3e-42 174.9 122 65.6
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 6.9e-42 174.5 162 51.9
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 2.2e-40 169.5 162 50.6
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.9e-40 169.1 123 63.4
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 1.4e-39 166.8 123 61.0
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 6.7e-37 157.9 103 68.9
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 1.9e-36 156.4 162 53.1
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 9.6e-36 154.1 140 61.4
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 2.8e-35 152.5 148 50.7
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 4.8e-35 151.8 123 56.1
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 5.3e-34 148.3 163 48.5
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.0e-32 144.1 175 50.3
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 1.3e-32 143.7 97 68.0
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 2.2e-32 142.9 175 49.7
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 6.5e-32 141.4 162 48.1
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 9.3e-31 137.5 163 44.8
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 7.9e-30 134.4 163 45.4
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 1.9e-28 129.8 89 66.3
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 1.9e-28 129.8 165 44.8
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.0e-25 119.8 132 49.2
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 3.9e-21 105.5 62 88.7
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 7.4e-20 101.3 117 50.4
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 4.1e-18 95.5 66 68.2
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 5.3e-18 95.1 58 77.6
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 3.8e-16 89.0 49 85.7
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 3.9e-13 79.0 46 82.6
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 2.4e-10 69.7 62 56.5
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.9e-08 62.8 66 42.4
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 4.2e-07 58.9 41 65.9


User provided reference genes

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