Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22457 Brassica carinata HOM05D007462 ORTHO05D002086 8.3e-43 176.8 99 100.0
BcaC09g49265 Brassica carinata HOM05D007462 ORTHO05D002086 5.9e-33 144.1 99 72.7
BolC4t23471H Brassica oleracea HOM05D007462 ORTHO05D002086 1.9e-31 139.0 94 85.1
BcaC01g03692 Brassica carinata HOM05D007462 ORTHO05D002086 7.5e-28 127.1 96 61.5
BcaB04g20307 Brassica carinata HOM05D007462 ORTHO05D002086 9.8e-28 126.7 96 75.0
BcaC04g20658 Brassica carinata HOM05D007462 ORTHO05D002086 2.2e-27 125.6 99 59.6
BcaC06g34269 Brassica carinata HOM05D007462 ORTHO05D002086 3.7e-27 124.8 99 59.6
BcaC02g11196 Brassica carinata HOM05D007462 ORTHO05D002086 9.2e-26 120.2 83 86.7
C06p46000 Brassica napus HOM05D007462 ORTHO05D002086 1.5e-20 102.8 99 57.6
BcaC04g21573 Brassica carinata HOM05D007462 ORTHO05D002086 3.7e-19 98.2 94 50.0
C02p52100 Brassica napus HOM05D007462 ORTHO05D002086 4.9e-19 97.8 98 46.9
BcaB04g17689 Brassica carinata HOM05D007462 ORTHO05D002086 6.4e-19 97.4 99 47.5
BolC2t11294H Brassica oleracea HOM05D006289 ORTHO05D002086 6.4e-19 97.4 98 46.9
C04p58390 Brassica napus HOM05D007462 ORTHO05D002086 1.4e-18 96.3 96 46.9
BraA02t08314Z Brassica rapa HOM05D007462 ORTHO05D002086 3.2e-18 95.1 95 46.3
BraA05t20011Z Brassica rapa HOM05D007462 ORTHO05D002086 3.2e-18 95.1 98 45.9
BcaC05g28128 Brassica carinata HOM05D007462 ORTHO05D002086 4.1e-18 94.7 89 49.4
BcaC01g02140 Brassica carinata HOM05D007462 ORTHO05D002086 5.4e-18 94.4 90 58.9
BcaC06g36027 Brassica carinata HOM05D007462 ORTHO05D002086 7.0e-18 94.0 90 61.1
BcaB06g26738 Brassica carinata HOM05D007462 ORTHO05D002086 1.2e-17 93.2 91 48.4
BcaC02g11886 Brassica carinata HOM05D007462 ORTHO05D002086 1.2e-17 93.2 95 45.3
BcaC08g44171 Brassica carinata HOM05D007462 ORTHO05D002086 1.2e-17 93.2 72 56.9
BolC4t26247H Brassica oleracea HOM05D007462 ORTHO05D002086 1.2e-17 93.2 99 45.5
BcaC02g07772 Brassica carinata HOM05D007462 ORTHO05D002086 1.6e-17 92.8 90 61.1
BolC2t08565H Brassica oleracea HOM05D007462 ORTHO05D002086 2.0e-17 92.4 65 61.5
BolC4t27363H Brassica oleracea HOM05D007462 ORTHO05D002086 2.0e-17 92.4 96 44.8
BraA01t02729Z Brassica rapa HOM05D007462 ORTHO05D002086 2.0e-17 92.4 95 46.3
BcaC03g14955 Brassica carinata HOM05D007462 ORTHO05D002086 2.7e-17 92.0 90 60.0
BolC6t36760H Brassica oleracea HOM05D007462 ORTHO05D002086 3.5e-17 91.7 72 55.6
BraA01t02125Z Brassica rapa HOM05D007462 ORTHO05D002086 4.6e-17 91.3 98 43.9
BolC3t19061H Brassica oleracea HOM05D007462 ORTHO05D002086 6.0e-17 90.9 65 60.0
BcaC01g02056 Brassica carinata HOM05D007462 ORTHO05D002086 1.3e-16 89.7 90 58.9
BolC1t01191H Brassica oleracea HOM05D007462 ORTHO05D002086 1.7e-16 89.4 65 60.0
BcaB02g11355 Brassica carinata HOM05D007462 ORTHO05D002086 2.3e-16 89.0 99 43.4
BcaC06g36483 Brassica carinata HOM05D007462 ORTHO05D002086 3.9e-16 88.2 90 57.8
BcaC07g37477 Brassica carinata HOM05D007462 ORTHO05D002086 5.0e-16 87.8 65 58.5
BolC8t47797H Brassica oleracea HOM05D007462 ORTHO05D002086 5.0e-16 87.8 65 58.5
BraA05t21229Z Brassica rapa HOM05D007462 ORTHO05D002086 1.9e-15 85.9 88 45.5
BcaB02g10757 Brassica carinata HOM05D007462 ORTHO05D002086 4.3e-15 84.7 97 44.3
BcaC04g21270 Brassica carinata HOM05D007462 ORTHO05D002086 2.1e-14 82.4 65 58.5
Aa31LG2G13790 Aethionema arabicum HOM05D007462 ORTHO05D002086 2.8e-14 82.0 63 55.6
BolC8t48748H Brassica oleracea HOM05D007462 ORTHO05D002086 1.1e-13 80.1 65 55.4
BcaC05g28261 Brassica carinata HOM05D007462 ORTHO05D002086 1.8e-13 79.3 90 51.1
BcaC07g38321 Brassica carinata HOM05D001379 ORTHO05D001277 5.2e-13 77.8 82 57.3
BraA07t28690Z Brassica rapa HOM05D007462 ORTHO05D002086 7.5e-12 73.9 50 64.0
CARHR148640 Cardamine hirsuta HOM05D000675 ORTHO05D002086 3.7e-11 71.6 75 44.0
THA.LOC104804713 Tarenaya hassleriana HOM05D007462 ORTHO05D002086 3.2e-10 68.6 65 49.2
CARHR151940 Cardamine hirsuta HOM05D000675 ORTHO05D002086 4.1e-10 68.2 75 44.0
Aa31sc689G30 Aethionema arabicum HOM05D000675 ORTHO05D002086 2.1e-09 65.9 72 43.1
BcaC05g25361 Brassica carinata HOM05D000675 ORTHO05D002086 3.5e-09 65.1 70 42.9
BcaB08g34481 Brassica carinata HOM05D000675 ORTHO05D002086 4.6e-09 64.7 67 43.3
BcaB03g15657 Brassica carinata HOM05D000675 ORTHO05D002086 7.8e-09 63.9 68 42.6
BcaB05g21895 Brassica carinata HOM05D000675 ORTHO05D002086 7.8e-09 63.9 68 42.6
BcaB05g22219 Brassica carinata HOM05D000675 ORTHO05D002086 7.8e-09 63.9 68 42.6
BcaB04g18535 Brassica carinata HOM05D000675 ORTHO05D002086 2.3e-08 62.4 68 39.7
BcaC02g11404 Brassica carinata HOM05D000675 ORTHO05D002086 2.3e-08 62.4 73 38.4
BolC3t21112H Brassica oleracea HOM05D000589 ORTHO05D001885 2.3e-08 62.4 94 38.3
CARHR293330 Cardamine hirsuta HOM05D000675 ORTHO05D002086 2.3e-08 62.4 75 40.0
BcaC01g04356 Brassica carinata HOM05D000675 ORTHO05D002086 3.0e-08 62.0 70 40.0
BcaC09g50385 Brassica carinata HOM05D000675 ORTHO05D002086 3.0e-08 62.0 73 39.7
BcaB01g01913 Brassica carinata HOM05D000675 ORTHO05D002086 3.9e-08 61.6 68 38.2
BraA05t20484Z Brassica rapa HOM05D007462 ORTHO05D002086 3.9e-08 61.6 48 54.2
Carub.0012s0017 Capsella rubella HOM05D007462 ORTHO05D011074 3.9e-08 61.6 65 43.1
Aa31LG9G5030 Aethionema arabicum HOM05D012680 ORTHO05D002086 5.1e-08 61.2 70 44.3
BcaC01g04891 Brassica carinata HOM05D007462 ORTHO05D011074 5.1e-08 61.2 95 34.7
BcaC06g33699 Brassica carinata HOM05D007462 ORTHO05D011074 5.1e-08 61.2 67 44.8
A07p20810 Brassica napus HOM05D007462 ORTHO05D002086 5.1e-08 61.2 45 60.0
THA.LOC104806974 Tarenaya hassleriana HOM05D007462 ORTHO05D002086 5.1e-08 61.2 57 49.1
BcaB04g19811 Brassica carinata HOM05D007462 ORTHO05D002086 6.6e-08 60.8 65 46.2
BcaC03g14861 Brassica carinata HOM05D007462 ORTHO05D011074 6.6e-08 60.8 69 42.0
BcaC05g26662 Brassica carinata HOM05D007462 ORTHO05D011074 6.6e-08 60.8 53 50.9
BolC6t36479H Brassica oleracea HOM05D000977 ORTHO05D001094 6.6e-08 60.8 71 38.0
Thhalv10012038m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 6.6e-08 60.8 67 40.3
Aa31LG2G17470 Aethionema arabicum HOM05D000675 ORTHO05D002086 8.6e-08 60.5 69 40.6
BcaB01g03291 Brassica carinata HOM05D000675 ORTHO05D002086 1.1e-07 60.1 73 37.0
THA.LOC104817596 Tarenaya hassleriana HOM05D007462 ORTHO05D002086 1.1e-07 60.1 59 47.5
Aa31LG7G11060 Aethionema arabicum HOM05D012680 ORTHO05D015807 1.5e-07 59.7 71 39.4
AL1G49470 Arabidopsis lyrata HOM05D007693 ORTHO05D002086 1.5e-07 59.7 65 43.1
AL9U10420 Arabidopsis lyrata HOM05D007693 ORTHO05D002086 1.5e-07 59.7 65 43.1
BcaB07g32893 Brassica carinata HOM05D000675 ORTHO05D002086 1.5e-07 59.7 71 36.6
BolC1t02623H Brassica oleracea HOM05D007462 ORTHO05D011074 1.5e-07 59.7 53 50.9
BolC7t41293H Brassica oleracea HOM05D007462 ORTHO05D002086 1.5e-07 59.7 90 51.1
BcaB08g35730 Brassica carinata HOM05D000675 ORTHO05D002086 1.9e-07 59.3 73 37.0
BcaC01g05867 Brassica carinata HOM05D007462 ORTHO05D011074 1.9e-07 59.3 53 50.9
BcaC02g11566 Brassica carinata HOM05D007462 ORTHO05D011074 1.9e-07 59.3 69 42.0
BcaC03g14143 Brassica carinata HOM05D007462 ORTHO05D011074 1.9e-07 59.3 53 50.9
BcaC04g22910 Brassica carinata HOM05D007462 ORTHO05D011074 1.9e-07 59.3 53 50.9
BcaC05g27351 Brassica carinata HOM05D000675 ORTHO05D002086 1.9e-07 59.3 73 35.6
BcaC07g38352 Brassica carinata HOM05D007462 ORTHO05D011074 1.9e-07 59.3 53 50.9
BcaB03g14368 Brassica carinata HOM05D000675 ORTHO05D002086 2.5e-07 58.9 73 35.6
BcaC06g34450 Brassica carinata HOM05D000675 ORTHO05D002086 2.5e-07 58.9 73 35.6
BcaC09g49807 Brassica carinata HOM05D000675 ORTHO05D002086 2.5e-07 58.9 73 35.6
CARHR217030 Cardamine hirsuta HOM05D007462 ORTHO05D011074 2.5e-07 58.9 77 37.7
AT4G04775 Arabidopsis thaliana HOM05D000675 ORTHO05D002086 3.3e-07 58.5 60 41.7
AT5G15690 Arabidopsis thaliana HOM05D000675 ORTHO05D002086 3.3e-07 58.5 60 41.7
BcaC04g22963 Brassica carinata HOM05D007462 ORTHO05D011074 3.3e-07 58.5 96 31.2
BcaC05g27596 Brassica carinata HOM05D000675 ORTHO05D002086 3.3e-07 58.5 68 39.7
BcaC07g36914 Brassica carinata HOM05D000675 ORTHO05D002086 3.3e-07 58.5 85 32.9
BolC9t54236H Brassica oleracea HOM05D007462 ORTHO05D011074 3.3e-07 58.5 96 31.2
Aa31LG5G22970 Aethionema arabicum HOM05D012680 ORTHO05D002086 4.3e-07 58.2 72 38.9
BcaB04g17468 Brassica carinata HOM05D007462 ORTHO05D011074 4.3e-07 58.2 60 45.0
A05p23610 Brassica napus HOM05D007462 ORTHO05D002086 4.3e-07 58.2 88 36.4
BolC4t25850H Brassica oleracea HOM05D000675 ORTHO05D002086 4.3e-07 58.2 68 39.7
BolC8t49094H Brassica oleracea HOM05D000589 ORTHO05D000401 4.3e-07 58.2 52 50.0
Aa31LG2G16780 Aethionema arabicum HOM05D000675 ORTHO05D015807 5.6e-07 57.8 72 36.1
BcaB05g22367 Brassica carinata HOM05D000675 ORTHO05D000395 5.6e-07 57.8 68 39.7
BcaC05g25220 Brassica carinata HOM05D000589 ORTHO05D001885 5.6e-07 57.8 53 49.1
BcaC08g45815 Brassica carinata HOM05D007462 ORTHO05D011074 5.6e-07 57.8 53 49.1
BcaNung00058 Brassica carinata HOM05D007462 ORTHO05D011074 5.6e-07 57.8 94 33.0
BraA01t03543Z Brassica rapa HOM05D007462 ORTHO05D002086 5.6e-07 57.8 90 35.6
Thhalv10029337m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 5.6e-07 57.8 65 43.1
BcaC03g15594 Brassica carinata HOM05D000675 ORTHO05D002086 7.3e-07 57.4 68 36.8
BcaC03g17084 Brassica carinata HOM05D007462 ORTHO05D011074 7.3e-07 57.4 67 43.3
BolC3t19562H Brassica oleracea HOM05D000589 ORTHO05D001885 7.3e-07 57.4 53 49.1
BolC7t46298H Brassica oleracea HOM05D000589 ORTHO05D001885 7.3e-07 57.4 56 48.2
BolC8t48273H Brassica oleracea HOM05D000589 ORTHO05D001885 7.3e-07 57.4 64 39.1
CARHR216410 Cardamine hirsuta HOM05D000675 ORTHO05D002086 7.3e-07 57.4 70 38.6
Aa31LG5G23570 Aethionema arabicum HOM05D012680 ORTHO05D002086 9.5e-07 57.0 74 37.8
BcaB04g16996 Brassica carinata HOM05D000675 ORTHO05D002086 9.5e-07 57.0 68 38.2
BcaC01g01799 Brassica carinata HOM05D007462 ORTHO05D011074 9.5e-07 57.0 69 40.6
BcaC03g17205 Brassica carinata HOM05D000675 ORTHO05D002086 9.5e-07 57.0 73 34.2
BcaC05g25703 Brassica carinata HOM05D000675 ORTHO05D002086 9.5e-07 57.0 68 35.3
BcaC05g28653 Brassica carinata HOM05D007462 ORTHO05D011074 9.5e-07 57.0 53 49.1
BcaC08g42855 Brassica carinata HOM05D000675 ORTHO05D002086 9.5e-07 57.0 68 35.3
BolC2t11221H Brassica oleracea HOM05D000675 ORTHO05D002086 9.5e-07 57.0 73 34.2
THA.LOC104818502 Tarenaya hassleriana HOM05D007693 ORTHO05D002086 9.5e-07 57.0 52 51.9
BcaC01g00556 Brassica carinata HOM05D007693 ORTHO05D002086 1.2e-06 56.6 69 39.1
BcaC03g16220 Brassica carinata HOM05D000675 ORTHO05D002086 1.2e-06 56.6 63 38.1
BcaC05g28255 Brassica carinata HOM05D000675 ORTHO05D002086 1.2e-06 56.6 63 38.1
BcaC06g35605 Brassica carinata HOM05D000675 ORTHO05D002086 1.2e-06 56.6 73 35.6
BcaC06g36214 Brassica carinata HOM05D000675 ORTHO05D002086 1.2e-06 56.6 63 38.1
BolC2t12077H Brassica oleracea HOM05D000675 ORTHO05D023943 1.2e-06 56.6 63 39.7
CARHR118340 Cardamine hirsuta HOM05D000675 ORTHO05D002086 1.2e-06 56.6 65 44.6
BcaB03g15647 Brassica carinata HOM05D000589 ORTHO05D001885 1.6e-06 56.2 62 40.3
BcaC07g38572 Brassica carinata HOM05D007462 ORTHO05D011074 1.6e-06 56.2 53 47.2
BcaC08g44148 Brassica carinata HOM05D007462 ORTHO05D011074 1.6e-06 56.2 95 31.6
C04p26820 Brassica napus HOM05D000675 ORTHO05D002086 1.6e-06 56.2 70 41.4
C04p27870 Brassica napus HOM05D000675 ORTHO05D032657 1.6e-06 56.2 68 38.2
BolC2t09536H Brassica oleracea HOM05D000675 ORTHO05D002086 1.6e-06 56.2 59 44.1
BolC4t24330H Brassica oleracea HOM05D000675 ORTHO05D032657 1.6e-06 56.2 68 38.2
BraA06t25708Z Brassica rapa HOM05D000589 ORTHO05D001885 1.6e-06 56.2 52 44.2
BcaC08g44362 Brassica carinata HOM05D000675 ORTHO05D002086 2.1e-06 55.8 66 39.4
BcaC09g48980 Brassica carinata HOM05D000675 ORTHO05D002086 2.1e-06 55.8 68 38.2
BcaC09g48982 Brassica carinata HOM05D000675 ORTHO05D002086 2.1e-06 55.8 68 38.2
BolC7t43826H Brassica oleracea HOM05D000589 ORTHO05D001885 2.1e-06 55.8 62 38.7
BraA04t16110Z Brassica rapa HOM05D000675 ORTHO05D002086 2.1e-06 55.8 68 39.7
AT1G48285 Arabidopsis thaliana HOM05D007462 ORTHO05D011074 2.8e-06 55.5 68 38.2
AT2G37125 Arabidopsis thaliana HOM05D007462 ORTHO05D011074 2.8e-06 55.5 68 38.2
BcaB07g32139 Brassica carinata HOM05D000675 ORTHO05D000395 2.8e-06 55.5 68 38.2
BcaC04g23550 Brassica carinata HOM05D000589 ORTHO05D001885 2.8e-06 55.5 52 50.0
BcaC05g29076 Brassica carinata HOM05D000675 ORTHO05D032634 2.8e-06 55.5 51 45.1
BcaC07g39835 Brassica carinata HOM05D000589 ORTHO05D001885 2.8e-06 55.5 62 38.7
BolC5t32981H Brassica oleracea HOM05D007462 ORTHO05D002086 2.8e-06 55.5 90 48.9
BraA06t25204Z Brassica rapa HOM05D007693 ORTHO05D002086 2.8e-06 55.5 68 42.6
BraA07t28124Z Brassica rapa HOM05D007462 ORTHO05D002086 2.8e-06 55.5 95 32.6
THA.LOC104810579 Tarenaya hassleriana HOM05D028755 ORTHO05D002086 2.8e-06 55.5 59 49.2
BcaB06g27534 Brassica carinata HOM05D000675 ORTHO05D000395 3.6e-06 55.1 68 38.2
BcaB07g32457 Brassica carinata HOM05D007462 ORTHO05D002086 3.6e-06 55.1 47 53.2
A06p23400 Brassica napus HOM05D000675 ORTHO05D002086 3.6e-06 55.1 70 41.4
BolC7t43381H Brassica oleracea HOM05D000589 ORTHO05D001885 3.6e-06 55.1 52 48.1
CARHR258030 Cardamine hirsuta HOM05D007462 ORTHO05D011074 3.6e-06 55.1 93 30.1
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 3.6e-06 55.1 46 50.0
SpUn1230_0020 Schrenkiella parvula HOM05D007693 ORTHO05D002086 3.6e-06 55.1 59 47.5
BcaB04g19206 Brassica carinata HOM05D000675 ORTHO05D003044 4.7e-06 54.7 68 38.2
BcaB05g22170 Brassica carinata HOM05D000589 ORTHO05D001885 4.7e-06 54.7 52 44.2
BcaC04g22824 Brassica carinata HOM05D000675 ORTHO05D002086 4.7e-06 54.7 63 36.5
BcaC08g42872 Brassica carinata HOM05D007462 ORTHO05D011074 4.7e-06 54.7 69 40.6
C02p48400 Brassica napus HOM05D000675 ORTHO05D002086 4.7e-06 54.7 71 39.4
C07p06000 Brassica napus HOM05D007693 ORTHO05D002086 4.7e-06 54.7 65 40.0
BolC7t41011H Brassica oleracea HOM05D007693 ORTHO05D002086 4.7e-06 54.7 65 40.0
Carub.0008s1552 Capsella rubella HOM05D000675 ORTHO05D002086 4.7e-06 54.7 73 35.6
BolC8t47336H Brassica oleracea HOM05D000589 ORTHO05D000401 6.2e-06 54.3 56 41.1
Carub.0003s3077 Capsella rubella HOM05D007693 ORTHO05D002086 6.2e-06 54.3 67 41.8
BcaB01g01312 Brassica carinata HOM05D000675 ORTHO05D003044 8.1e-06 53.9 70 40.0
BcaB07g31602 Brassica carinata HOM05D000675 ORTHO05D000395 8.1e-06 53.9 67 37.3
BcaC06g33294 Brassica carinata HOM05D007693 ORTHO05D002086 8.1e-06 53.9 57 40.4
BolC5t30704H Brassica oleracea HOM05D000589 ORTHO05D000401 8.1e-06 53.9 64 43.8
Thhalv10003330m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 8.1e-06 53.9 53 47.2


User provided reference genes

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