Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 1.9e-178 629.0 312 100.0
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 1.5e-154 549.7 312 86.2
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 8.1e-153 543.9 323 83.9
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 5.8e-151 537.7 323 83.0
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 3.2e-149 531.9 312 84.9
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 3.0e-147 525.4 326 81.6
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 1.1e-146 523.5 312 82.1
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 3.6e-145 518.5 325 79.7
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 9.0e-144 513.8 311 81.7
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 2.6e-143 512.3 326 78.8
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 8.7e-139 497.3 317 78.5
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 7.6e-135 484.2 302 80.1
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 4.5e-127 458.4 322 69.3
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.9e-109 399.8 309 64.4
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 6.1e-108 394.8 310 63.5
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 3.0e-107 392.5 311 63.0
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 1.1e-106 390.6 320 61.9
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 2.0e-106 389.8 321 61.4
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 9.7e-106 387.5 312 61.5
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 3.7e-105 385.6 319 61.4
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 1.1e-104 384.0 320 60.9
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 4.1e-104 382.1 316 60.1
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 1.2e-103 380.6 319 59.6
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 3.5e-103 379.0 307 60.6
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 7.7e-103 377.9 303 59.7
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 1.0e-102 377.5 320 59.7
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 1.7e-102 376.7 316 60.8
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 3.8e-102 375.6 318 59.4
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 5.0e-102 375.2 315 59.0
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 5.5e-101 371.7 314 60.2
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 1.6e-100 370.2 307 60.3
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 3.6e-100 369.0 322 58.1
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 5.2e-99 365.2 318 58.8
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 8.8e-99 364.4 307 58.3
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 2.0e-98 363.2 313 58.1
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 2.0e-98 363.2 316 57.3
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 7.5e-98 361.3 310 58.7
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 2.2e-97 359.8 317 57.4
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 2.8e-97 359.4 317 58.4
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 1.4e-96 357.1 328 57.6
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 2.4e-96 356.3 315 55.9
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 3.1e-96 355.9 369 53.7
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 5.3e-96 355.1 321 56.1
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 5.3e-96 355.1 321 56.1
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 1.6e-95 353.6 341 54.5
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 4.5e-95 352.1 313 55.9
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 1.3e-94 350.5 310 56.8
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 2.2e-94 349.7 309 58.3
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 2.9e-94 349.4 316 62.7
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 2.9e-94 349.4 316 57.3
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 3.8e-94 349.0 313 55.6
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 1.9e-93 346.7 318 53.1
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 4.2e-93 345.5 318 55.0
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 5.5e-93 345.1 363 51.2
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 6.1e-92 341.7 248 66.9
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.8e-91 340.1 295 59.0
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 4.0e-91 339.0 291 59.1
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.2e-90 337.4 301 56.8
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 3.4e-90 335.9 307 56.7
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 5.7e-90 335.1 304 55.3
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 7.5e-90 334.7 313 52.1
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.3e-89 334.0 367 49.9
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 1.8e-88 330.1 371 49.9
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 1.8e-88 330.1 372 48.9
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 3.1e-88 329.3 377 49.1
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 3.1e-88 329.3 377 49.1
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 5.4e-88 328.6 305 54.8
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 1.6e-87 327.0 303 56.4
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 7.7e-87 324.7 318 53.5
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 7.7e-87 324.7 251 64.1
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 2.9e-86 322.8 308 54.2
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 1.1e-85 320.9 316 53.5
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.1e-85 320.9 278 58.3
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 1.9e-85 320.1 318 54.1
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.9e-85 320.1 347 51.0
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 7.2e-85 318.2 304 54.6
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 7.2e-85 318.2 318 52.2
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 2.1e-84 316.6 275 57.8
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 1.4e-83 313.9 281 56.9
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 3.4e-82 309.3 305 53.8
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 4.1e-80 302.4 318 52.2
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 1.6e-79 300.4 333 48.3
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 2.7e-79 299.7 275 52.7
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 2.1e-76 290.0 309 49.8
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 2.1e-76 290.0 309 49.8
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.4e-75 287.3 267 54.3
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 5.2e-75 285.4 332 46.1
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 9.8e-74 281.2 230 60.4
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 4.9e-73 278.9 313 47.3
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 3.2e-72 276.2 193 69.4
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 3.0e-70 269.6 302 46.7
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 1.9e-69 266.9 230 60.4
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 2.5e-69 266.5 311 49.2
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 2.5e-69 266.5 197 66.5
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 9.5e-69 264.6 296 46.6
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 1.6e-68 263.8 219 60.3
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 4.7e-68 262.3 305 46.9
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 4.7e-68 262.3 226 60.2
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 1.0e-67 261.2 232 57.3
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 3.1e-67 259.6 309 47.2
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 6.8e-67 258.5 226 58.8
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 8.9e-67 258.1 314 46.2
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 7.5e-66 255.0 225 57.3
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 2.2e-65 253.4 235 54.5
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 4.9e-65 252.3 315 45.4
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 6.4e-65 251.9 205 59.0
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 1.9e-64 250.4 223 57.4
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 1.6e-55 220.7 153 67.3
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 1.5e-53 214.2 293 40.6
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 3.6e-52 209.5 264 45.5
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 6.2e-52 208.8 181 56.4
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 4.0e-51 206.1 141 68.8
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 6.8e-51 205.3 317 41.6
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.2e-47 194.5 182 55.5
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 7.3e-45 185.3 134 68.7
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 1.2e-42 177.9 181 53.0
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 5.4e-40 169.1 127 62.2
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 1.3e-36 157.9 220 42.3
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 9.9e-34 148.3 162 49.4
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 4.2e-32 142.9 140 53.6
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 2.1e-31 140.6 103 66.0
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 4.2e-24 116.3 168 42.9
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 9.3e-24 115.2 91 61.5
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 1.3e-22 111.3 91 63.7
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 3.9e-22 109.8 73 69.9
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 2.5e-13 80.5 102 43.1
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 6.9e-11 72.4 66 50.0
MD00G1188300 Malus domestica HOM05D006152 ORTHO05D029506 6.1e-07 59.3 41 63.4
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 7.9e-07 58.9 57 50.9
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.3e-06 58.2 81 40.7
FvH4_1g01381 Fragaria vesca HOM05D006152 ORTHO05D029506 6.7e-06 55.8 42 61.9
FAN19G2321 Fragaria x ananassa HOM05D006152 ORTHO05D029506 6.7e-06 55.8 42 61.9
FAN26G1951 Fragaria x ananassa HOM05D006152 ORTHO05D029506 6.7e-06 55.8 42 61.9


User provided reference genes

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