Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22364 Brassica carinata HOM05D007723 ORTHO05D010327 3.8e-76 288.1 149 100.0
BcaB05g22365 Brassica carinata HOM05D007723 ORTHO05D017516 7.2e-75 283.9 146 100.0
A06p01840 Brassica napus HOM05D007723 ORTHO05D017516 2.3e-65 252.3 146 90.4
BraA06t23401Z Brassica rapa HOM05D007723 ORTHO05D017516 8.9e-65 250.4 146 89.7
BcaC08g43419 Brassica carinata HOM05D007723 ORTHO05D010327 2.8e-63 245.4 142 90.1
C06p06040 Brassica napus HOM05D007723 ORTHO05D017516 1.2e-58 229.9 148 84.5
BolC6t35717H Brassica oleracea HOM05D007723 ORTHO05D017516 1.2e-58 229.9 148 84.5
BcaC08g43259 Brassica carinata HOM05D007723 ORTHO05D017516 9.2e-38 160.6 95 85.3
AL7G48800 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 3.8e-23 112.1 150 49.3
AL7G49130 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 3.8e-23 112.1 150 49.3
AL7G49150 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 1.1e-22 110.5 147 48.3
AT3G48835 Arabidopsis thaliana HOM05D007723 ORTHO05D010327 2.4e-22 109.4 160 47.5
Thhalv10018369m.g Eutrema salsugineum HOM05D007723 ORTHO05D010327 5.4e-22 108.2 153 44.4
AL7G49950 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 2.7e-21 105.9 150 46.7
Sp5g24210 Schrenkiella parvula HOM05D007723 ORTHO05D010327 2.7e-21 105.9 150 46.7
Carub.0007s3379 Capsella rubella HOM05D007723 ORTHO05D010327 2.5e-19 99.4 150 45.3
Sp5g26910 Schrenkiella parvula HOM05D007723 ORTHO05D010327 2.5e-19 99.4 148 46.6
SpUn0020_0070 Schrenkiella parvula HOM05D007723 ORTHO05D010327 2.5e-19 99.4 148 46.6
A01p10210 Brassica napus HOM05D007723 ORTHO05D019955 1.6e-18 96.7 148 48.0
BraA01t00966Z Brassica rapa HOM05D007723 ORTHO05D019955 1.6e-18 96.7 148 48.0
AL5G28350 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 2.1e-18 96.3 151 41.7
BolC3t16447H Brassica oleracea HOM05D007723 ORTHO05D010327 4.8e-18 95.1 149 45.0
AL7G48270 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 6.9e-17 91.3 143 43.4
BcaC03g18014 Brassica carinata HOM05D007723 ORTHO05D021795 1.5e-16 90.1 146 39.0
BolC2t12124H Brassica oleracea HOM05D007723 ORTHO05D021795 1.5e-16 90.1 146 39.0
AT3G10845 Arabidopsis thaliana HOM05D007723 ORTHO05D010327 7.6e-16 87.8 195 37.4
A02p40830 Brassica napus HOM05D007723 ORTHO05D021795 9.9e-16 87.4 154 40.3
AL7G47660 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 1.3e-15 87.0 97 50.5
C02p60730 Brassica napus HOM05D007723 ORTHO05D021795 1.3e-15 87.0 144 41.0
Carub.0005s1501 Capsella rubella HOM05D007723 ORTHO05D010327 3.8e-15 85.5 99 47.5
A02p17480 Brassica napus HOM05D007723 ORTHO05D010327 8.4e-15 84.3 175 38.3
C03p41670 Brassica napus HOM05D007723 ORTHO05D010327 2.4e-14 82.8 177 39.0
BraA02t06793Z Brassica rapa HOM05D007723 ORTHO05D010327 3.2e-14 82.4 179 38.0
C02p29140 Brassica napus HOM05D007723 ORTHO05D010327 4.2e-14 82.0 175 38.9
BolC2t08963H Brassica oleracea HOM05D007723 ORTHO05D010327 4.2e-14 82.0 175 38.9
BraA02t09028Z Brassica rapa HOM05D007723 ORTHO05D021795 5.4e-14 81.6 149 40.9
CARHR037380 Cardamine hirsuta HOM05D007723 ORTHO05D010327 7.1e-14 81.3 141 38.3
AL7G49680 Arabidopsis lyrata HOM05D003182 ORTHO05D003829 2.1e-13 79.7 89 50.6
BcaB05g22608 Brassica carinata HOM05D007723 ORTHO05D019955 2.1e-13 79.7 87 50.6
C06p07840 Brassica napus HOM05D007723 ORTHO05D017516 6.0e-13 78.2 88 51.1
BolC6t35870H Brassica oleracea HOM05D007723 ORTHO05D017516 6.0e-13 78.2 88 51.1
CARHR065380 Cardamine hirsuta HOM05D007723 ORTHO05D010327 6.0e-13 78.2 92 52.2
BolC2t07291H Brassica oleracea HOM05D007723 ORTHO05D019955 7.9e-13 77.8 114 46.5
AL7G49700 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 1.0e-12 77.4 97 44.3
BcaC03g15302 Brassica carinata HOM05D007723 ORTHO05D010327 1.8e-12 76.6 133 42.1
AL7G46120 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 3.9e-12 75.5 139 36.0
AT5G41690 Arabidopsis thaliana HOM05D007723 ORTHO05D010327 3.9e-12 75.5 148 38.5
AT3G48840 Arabidopsis thaliana HOM05D007723 ORTHO05D010327 5.1e-12 75.1 99 43.4
BcaB07g29891 Brassica carinata HOM05D007723 ORTHO05D021795 5.1e-12 75.1 144 39.6
AL7G46090 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 8.7e-12 74.3 97 45.4
Thhalv10018407m.g Eutrema salsugineum HOM05D007723 ORTHO05D010327 8.7e-12 74.3 151 35.8
AL7G49110 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 1.9e-11 73.2 151 37.1
BcaC09g51543 Brassica carinata HOM05D007723 ORTHO05D019955 2.5e-11 72.8 113 42.5
C01p12020 Brassica napus HOM05D007723 ORTHO05D019955 2.5e-11 72.8 113 42.5
BcaC03g18012 Brassica carinata HOM05D007723 ORTHO05D010327 5.6e-11 71.6 120 40.0
Carub.0007s3494 Capsella rubella HOM05D007723 ORTHO05D010327 7.4e-11 71.2 102 41.2
Carub.0007s2554 Capsella rubella HOM05D007723 ORTHO05D010327 1.3e-10 70.5 83 47.0
AT1G45100 Arabidopsis thaliana HOM05D007723 ORTHO05D010327 1.6e-10 70.1 125 39.2
CARHR219370 Cardamine hirsuta HOM05D007723 ORTHO05D010327 1.6e-10 70.1 98 42.9
Thhalv10019472m.g Eutrema salsugineum HOM05D007723 ORTHO05D010327 1.6e-10 70.1 143 37.8
C06p07850 Brassica napus HOM05D007723 ORTHO05D017516 2.8e-10 69.3 36 86.1
CARHR123890 Cardamine hirsuta HOM05D007723 ORTHO05D010327 3.7e-10 68.9 77 46.8
BolC1t01176H Brassica oleracea HOM05D007723 ORTHO05D019955 4.8e-10 68.6 113 41.6
CARHR253110 Cardamine hirsuta HOM05D007723 ORTHO05D010327 1.1e-09 67.4 97 41.2
CARHR037370 Cardamine hirsuta HOM05D007723 ORTHO05D010327 2.4e-09 66.2 97 43.3
Carub.0007s3512 Capsella rubella HOM05D007723 ORTHO05D010327 3.1e-09 65.9 158 36.7
Sp5g26900 Schrenkiella parvula HOM05D007723 ORTHO05D010327 6.9e-09 64.7 103 41.7
BcaB05g24685 Brassica carinata HOM05D007723 ORTHO05D010327 3.4e-08 62.4 148 37.2
BcaC05g29897 Brassica carinata HOM05D007723 ORTHO05D010327 2.2e-07 59.7 86 39.5
A05p29590 Brassica napus HOM05D007723 ORTHO05D010327 2.2e-07 59.7 89 41.6
BolC5t34971H Brassica oleracea HOM05D007723 ORTHO05D010327 2.2e-07 59.7 86 39.5
A05p29350 Brassica napus HOM05D007723 ORTHO05D010327 4.9e-07 58.5 90 40.0
A05p29750 Brassica napus HOM05D007723 ORTHO05D010327 4.9e-07 58.5 90 40.0
C05p48260 Brassica napus HOM05D007723 ORTHO05D010327 4.9e-07 58.5 90 40.0
AL3G52780 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 6.4e-07 58.2 104 41.3
BcaC05g30204 Brassica carinata HOM05D007723 ORTHO05D010327 6.4e-07 58.2 84 40.5
A05p31800 Brassica napus HOM05D007723 ORTHO05D010327 8.4e-07 57.8 90 40.0
BraA05t22011Z Brassica rapa HOM05D007723 ORTHO05D010327 8.4e-07 57.8 90 40.0
BcaC02g07541 Brassica carinata HOM05D007723 ORTHO05D010327 1.1e-06 57.4 86 38.4
BcaC07g38889 Brassica carinata HOM05D007723 ORTHO05D010327 1.9e-06 56.6 77 42.9
BolC8t49452H Brassica oleracea HOM05D007723 ORTHO05D010327 1.9e-06 56.6 77 42.9
C05p23510 Brassica napus HOM05D007723 ORTHO05D010327 7.1e-06 54.7 86 38.4
Carub.0007s3490 Capsella rubella HOM05D007723 ORTHO05D010327 7.1e-06 54.7 108 38.9
vmacro10896 Vaccinium macrocarpon HOM05D002658 ORTHO05D003000 7.1e-06 54.7 111 33.3


User provided reference genes

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