Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 2.5e-63 245.4 131 100.0
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 1.2e-54 216.5 131 87.8
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 2.1e-54 215.7 131 87.8
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 4.7e-54 214.5 130 86.9
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 4.7e-54 214.5 130 86.9
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 8.1e-54 213.8 131 87.0
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 8.1e-54 213.8 129 87.6
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 6.8e-53 210.7 130 85.4
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 6.8e-53 210.7 130 85.4
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 3.9e-48 194.9 131 81.7
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 1.9e-47 192.6 131 80.9
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 1.6e-46 189.5 131 81.7
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 4.0e-45 184.9 131 78.6
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 4.0e-45 184.9 131 78.6
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 7.1e-42 174.1 121 76.9
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 5.1e-40 167.9 137 71.5
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 9.6e-39 163.7 125 72.8
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 1.4e-29 133.3 87 82.8
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 1.4e-29 133.3 87 82.8
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 7.4e-23 110.9 116 54.3
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 2.1e-22 109.4 122 54.9
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 2.8e-22 109.0 119 52.9
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 2.8e-22 109.0 122 54.1
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 1.1e-21 107.1 130 53.1
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.8e-21 106.3 124 51.6
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 4.0e-21 105.1 121 54.5
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 5.3e-21 104.8 124 53.2
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.6e-20 102.4 119 51.3
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 3.4e-20 102.1 127 49.6
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 5.8e-20 101.3 120 51.7
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 7.6e-20 100.9 126 52.4
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.0e-19 100.5 120 51.7
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 1.0e-19 100.5 124 51.6
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.0e-19 100.5 131 48.1
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 1.3e-19 100.1 126 53.2
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.3e-19 100.1 124 48.4
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.3e-19 100.1 120 50.8
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 2.2e-19 99.4 124 49.2
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.8e-19 98.6 120 50.8
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 8.4e-19 97.4 115 52.2
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 8.4e-19 97.4 116 52.6
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 8.4e-19 97.4 112 53.6
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.4e-18 96.7 122 50.0
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.4e-18 96.7 124 49.2
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 1.4e-18 96.7 130 51.5
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 1.9e-18 96.3 125 50.4
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.9e-18 96.3 115 48.7
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 3.2e-18 95.5 120 50.8
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 4.2e-18 95.1 123 48.0
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.1e-18 94.4 124 49.2
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 9.3e-18 94.0 119 46.2
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 9.3e-18 94.0 131 45.8
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.1e-17 92.8 124 48.4
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.1e-17 92.8 124 48.4
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 2.1e-17 92.8 116 50.9
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 3.5e-17 92.0 129 50.4
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 6.0e-17 91.3 118 44.1
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 7.9e-17 90.9 121 49.6
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.0e-16 90.5 117 51.3
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.0e-16 90.5 123 44.7
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.3e-16 90.1 117 51.3
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 1.3e-16 90.1 125 44.0
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.3e-16 89.4 118 50.0
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 2.3e-16 89.4 129 49.6
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.0e-16 89.0 132 47.0
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 3.9e-16 88.6 115 45.2
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.1e-16 88.2 129 49.6
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 8.7e-16 87.4 129 44.2
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.5e-15 86.7 118 47.5
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 1.5e-15 86.7 130 44.6
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 2.5e-15 85.9 125 52.0
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 2.5e-15 85.9 114 47.4
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 3.3e-15 85.5 129 46.5
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 3.3e-15 85.5 119 47.1
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 4.3e-15 85.1 123 48.0
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 4.3e-15 85.1 123 51.2
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 4.3e-15 85.1 113 48.7
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 4.3e-15 85.1 113 48.7
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 5.7e-15 84.7 116 48.3
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 5.7e-15 84.7 127 45.7
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 7.4e-15 84.3 137 40.1
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 7.4e-15 84.3 112 49.1
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 7.4e-15 84.3 126 47.6
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 3.7e-14 82.0 114 43.9
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 4.8e-14 81.6 120 39.2
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 8.2e-14 80.9 134 41.0
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 8.2e-14 80.9 123 45.5
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.1e-13 80.5 120 45.8
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 1.4e-13 80.1 120 45.0
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 1.8e-13 79.7 121 41.3
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 1.8e-13 79.7 116 44.8
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.8e-13 79.7 125 44.0
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 1.8e-13 79.7 126 45.2
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 2.4e-13 79.3 120 48.3
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.1e-13 79.0 134 40.3
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 4.1e-13 78.6 116 38.8
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 4.1e-13 78.6 74 58.1
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 5.3e-13 78.2 114 42.1
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 5.3e-13 78.2 125 44.0
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 9.0e-13 77.4 114 43.0
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.5e-12 76.6 119 47.1
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.5e-12 76.6 119 47.1
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.0e-12 76.3 112 46.4
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 2.6e-12 75.9 122 42.6
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 3.4e-12 75.5 116 43.1
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 4.5e-12 75.1 120 45.8
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 5.9e-12 74.7 118 42.4
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.0e-11 73.9 130 42.3
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.3e-11 73.6 130 41.5
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 1.3e-11 73.6 121 47.1
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 1.7e-11 73.2 112 42.9
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 1.7e-11 73.2 129 43.4
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.2e-11 72.8 122 42.6
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.2e-11 72.8 116 41.4
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 5.0e-11 71.6 122 39.3
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 8.4e-11 70.9 109 43.1
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 8.4e-11 70.9 98 52.0
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.1e-10 70.5 128 35.9
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 1.1e-10 70.5 125 43.2
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 1.9e-10 69.7 131 40.5
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.9e-10 69.7 113 42.5
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.5e-10 69.3 126 38.9
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 2.5e-10 69.3 116 43.1
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 2.5e-10 69.3 116 43.1
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.5e-10 69.3 124 38.7
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 3.2e-10 68.9 111 44.1
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.2e-10 68.9 122 38.5
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.2e-10 68.9 116 38.8
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 4.2e-10 68.6 151 32.5
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 5.5e-10 68.2 117 38.5
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 5.5e-10 68.2 119 42.9
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 7.2e-10 67.8 134 35.1
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 2.1e-09 66.2 118 40.7
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.1e-09 66.2 98 50.0
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.5e-09 65.5 122 37.7
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 3.5e-09 65.5 122 41.0
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 4.6e-09 65.1 122 36.9
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 1.0e-08 63.9 134 38.8
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 1.3e-08 63.5 151 35.8
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 1.3e-08 63.5 118 37.3
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 1.8e-08 63.2 69 55.1
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 3.0e-08 62.4 104 42.3
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 3.0e-08 62.4 121 34.7
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 3.9e-08 62.0 138 34.1
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.1e-07 60.5 110 39.1
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 3.3e-07 58.9 144 35.4
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 1.3e-06 57.0 112 38.4
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 3.7e-06 55.5 163 30.7
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 6.3e-06 54.7 131 34.4
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 8.2e-06 54.3 137 31.4


User provided reference genes

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