Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 4.9e-63 244.2 116 100.0
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 2.5e-59 231.9 113 95.6
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 2.5e-59 231.9 113 95.6
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 2.5e-59 231.9 113 95.6
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 4.3e-59 231.1 113 94.7
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 4.3e-59 231.1 113 94.7
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 1.2e-53 213.0 115 85.2
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 1.5e-48 196.1 116 79.3
C09p49280 Brassica napus HOM05D007262 ORTHO05D008524 1.0e-47 193.4 115 79.1
BolC9t57779H Brassica oleracea HOM05D007262 ORTHO05D008524 1.0e-47 193.4 115 79.1
BcaC04g19970 Brassica carinata HOM05D007262 ORTHO05D008524 3.8e-47 191.4 115 78.3
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 1.4e-46 189.5 118 74.6
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 4.6e-45 184.5 116 75.0
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 1.8e-44 182.6 118 72.9
A10p14860 Brassica napus HOM05D007262 ORTHO05D008524 2.2e-42 175.6 115 73.9
BraA10t43564Z Brassica rapa HOM05D007262 ORTHO05D008524 1.1e-41 173.3 115 73.0
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 3.3e-35 151.8 118 65.3
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 1.4e-33 146.4 112 67.0
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 1.1e-27 126.7 114 60.5
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 1.8e-25 119.4 114 57.0
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 4.5e-24 114.8 114 56.1
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 7.7e-24 114.0 114 55.3
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 1.7e-23 112.8 117 53.8
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 2.9e-23 112.1 114 54.4
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 5.0e-23 111.3 114 54.4
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 8.5e-23 110.5 114 53.5
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 8.5e-23 110.5 114 53.5
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 1.1e-22 110.2 116 54.3
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 1.1e-22 110.2 114 53.5
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 1.1e-22 110.2 114 53.5
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 1.5e-22 109.8 110 55.5
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 3.6e-21 105.1 117 53.8
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 2.0e-19 99.4 115 51.3
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 2.0e-16 89.4 92 48.9
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 2.7e-16 89.0 88 52.3
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 2.7e-16 89.0 83 56.6
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 5.9e-16 87.8 91 54.9
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 1.3e-15 86.7 92 50.0
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 1.7e-15 86.3 96 51.0
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 2.9e-15 85.5 107 46.7
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 3.8e-15 85.1 112 42.9
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 3.8e-15 85.1 94 52.1
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 3.8e-15 85.1 83 51.8
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 5.0e-15 84.7 68 63.2
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 6.5e-15 84.3 97 47.4
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 6.5e-15 84.3 85 52.9
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 1.5e-14 83.2 90 51.1
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 1.9e-14 82.8 87 49.4
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 2.5e-14 82.4 91 51.6
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 2.5e-14 82.4 87 54.0
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 2.5e-14 82.4 87 50.6
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 5.5e-14 81.3 87 48.3
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 5.5e-14 81.3 104 51.0
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 5.5e-14 81.3 105 45.7
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 9.4e-14 80.5 86 45.3
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 9.4e-14 80.5 97 45.4
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 1.2e-13 80.1 83 51.8
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.6e-13 79.7 91 47.3
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 1.6e-13 79.7 82 53.7
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 2.1e-13 79.3 84 48.8
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 3.6e-13 78.6 99 48.5
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 4.7e-13 78.2 85 50.6
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 6.1e-13 77.8 85 50.6
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 8.0e-13 77.4 95 48.4
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 1.0e-12 77.0 113 46.0
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 1.4e-12 76.6 93 48.4
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 1.4e-12 76.6 85 50.6
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 1.8e-12 76.3 73 56.2
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 2.3e-12 75.9 85 51.8
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 5.2e-12 74.7 90 46.7
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 5.2e-12 74.7 94 48.9
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 6.8e-12 74.3 65 58.5
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 6.8e-12 74.3 95 44.2
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 1.2e-11 73.6 94 47.9
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 1.2e-11 73.6 87 46.0
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 2.0e-11 72.8 75 54.7
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 3.4e-11 72.0 86 45.3
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 3.4e-11 72.0 100 47.0
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 4.4e-11 71.6 99 42.4
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 5.7e-11 71.2 86 45.3
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 5.7e-11 71.2 90 46.7
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 9.8e-11 70.5 63 52.4
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 8.3e-10 67.4 90 42.2
DCAR_017972 Daucus carota HOM05D007262 ORTHO05D008524 1.1e-09 67.0 101 40.6
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 1.1e-09 67.0 91 44.0
BolC8t48635H Brassica oleracea HOM05D030154 ORTHO05D043166 1.4e-09 66.6 94 47.9
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 1.8e-09 66.2 89 46.1
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 2.4e-09 65.9 76 44.7
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 3.1e-09 65.5 98 40.8
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 4.1e-09 65.1 76 44.7
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 5.4e-09 64.7 73 41.1
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 9.1e-09 63.9 65 53.8
SGA_v2.0_scaffold69G23249 Striga asiatica HOM05D007262 ORTHO05D008524 9.1e-09 63.9 97 40.2
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 1.2e-08 63.5 65 52.3
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 1.2e-08 63.5 98 43.9
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 1.6e-08 63.2 65 50.8
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 2.7e-08 62.4 116 38.8
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 3.5e-08 62.0 89 42.7
SalBow6G4300 Salvia bowleyana HOM05D007262 ORTHO05D008524 5.9e-08 61.2 73 46.6
MELO3C017460.2 Cucumis melo HOM05D007262 ORTHO05D008524 7.7e-08 60.8 67 52.2
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 7.7e-08 60.8 90 35.6
COL.COLO4_32474 Corchorus olitorius HOM05D018436 ORTHO05D025173 1.0e-07 60.5 75 46.7
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 1.0e-07 60.5 79 43.0
COL.COLO4_37718 Corchorus olitorius HOM05D018436 ORTHO05D008524 1.7e-07 59.7 69 46.4
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 1.7e-07 59.7 90 40.0
ClCG11G005770 Citrullus lanatus HOM05D002277 ORTHO05D001770 2.3e-07 59.3 87 39.1
QL02p097844 Quercus lobata HOM05D007262 ORTHO05D008524 2.3e-07 59.3 109 39.4
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.8e-07 58.5 94 41.5
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 3.8e-07 58.5 97 35.1
CiPaw.08G035800 Carya illinoinensis HOM05D007262 ORTHO05D008524 5.0e-07 58.2 127 36.2
Atru.chr12.148 Acer truncatum HOM05D002277 ORTHO05D001770 6.6e-07 57.8 63 49.2
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 8.6e-07 57.4 80 41.2
Lj2C62G11 Lonicera japonica HOM05D002277 ORTHO05D001770 8.6e-07 57.4 119 36.1
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 8.6e-07 57.4 86 41.9
Sed0006032 Sechium edule HOM05D002277 ORTHO05D001770 1.1e-06 57.0 62 51.6
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 1.5e-06 56.6 75 42.7
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 1.5e-06 56.6 63 44.4
Gorai.011G129500 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.5e-06 56.6 100 39.0
Gorai.011G210700 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.5e-06 56.6 109 34.9
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 1.5e-06 56.6 73 46.6
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 1.9e-06 56.2 83 42.2
Migut.J01486 Erythranthe guttata HOM05D007262 ORTHO05D008524 1.9e-06 56.2 83 42.2
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 2.5e-06 55.8 95 41.1
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 2.5e-06 55.8 75 45.3
Thecc.09G176700 Theobroma cacao HOM05D018436 ORTHO05D025173 2.5e-06 55.8 66 48.5
MELO3C019998.2 Cucumis melo HOM05D002277 ORTHO05D001770 3.3e-06 55.5 87 36.8
Gohir.A10G181050 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.3e-06 55.5 77 39.0
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 3.3e-06 55.5 80 38.8
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 4.2e-06 55.1 73 43.8
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 4.2e-06 55.1 73 41.1
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 4.2e-06 55.1 65 43.1
PGR044G1930 Punica granatum HOM05D002277 ORTHO05D001770 4.2e-06 55.1 92 38.0
Sabra04G0150900 Salix brachista HOM05D002277 ORTHO05D001770 4.2e-06 55.1 86 43.0
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 4.2e-06 55.1 79 43.0
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 5.5e-06 54.7 67 44.8
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 5.5e-06 54.7 94 40.4
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 5.5e-06 54.7 88 38.6
LjContig00357g0012454 Lotus japonicus HOM05D002277 ORTHO05D001770 5.5e-06 54.7 75 41.3
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 5.5e-06 54.7 85 36.5
Sabra18G0078900 Salix brachista HOM05D007262 ORTHO05D008524 5.5e-06 54.7 91 39.6
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 5.5e-06 54.7 80 40.0
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 5.5e-06 54.7 74 43.2
Actinidia29050 Actinidia chinensis HOM05D002277 ORTHO05D001770 7.2e-06 54.3 88 40.9
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 7.2e-06 54.3 102 38.2
CDE12G0812 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 7.2e-06 54.3 101 36.6
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.2e-06 54.3 94 40.4
Phvul.001G249100 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 7.2e-06 54.3 50 56.0
Potri.016G133200 Populus trichocarpa HOM05D002277 ORTHO05D001770 7.2e-06 54.3 77 42.9
Rhsim01G0241900 Rhododendron simsii HOM05D002277 ORTHO05D001770 7.2e-06 54.3 87 41.4
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 7.2e-06 54.3 66 43.9
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 7.2e-06 54.3 79 41.8
Gohir.D02G005400 Gossypium hirsutum HOM05D002277 ORTHO05D001770 9.5e-06 53.9 84 39.3


User provided reference genes

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