Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22329 Brassica carinata HOM05D006321 ORTHO05D007929 1.3e-84 316.2 146 100.0
Thhalv10014893m.g Eutrema salsugineum HOM05D006321 ORTHO05D007929 1.4e-51 206.5 157 71.3
BcaC04g19986 Brassica carinata HOM05D006321 ORTHO05D007929 1.9e-51 206.1 157 70.7
AL8G33200 Arabidopsis lyrata HOM05D006321 ORTHO05D007929 5.5e-51 204.5 157 70.1
A10p14640 Brassica napus HOM05D006321 ORTHO05D007929 5.5e-51 204.5 157 70.7
BraA10t43551Z Brassica rapa HOM05D006321 ORTHO05D007929 5.5e-51 204.5 157 70.7
Carub.0008s1773 Capsella rubella HOM05D006321 ORTHO05D007929 7.1e-51 204.1 157 69.4
Sp6g18970 Schrenkiella parvula HOM05D006321 ORTHO05D007929 9.3e-51 203.8 157 70.1
BcaB08g36085 Brassica carinata HOM05D006321 ORTHO05D007929 1.2e-50 203.4 157 70.7
AT5G57230 Arabidopsis thaliana HOM05D006321 ORTHO05D007929 4.6e-50 201.4 157 68.8
C09p49090 Brassica napus HOM05D006321 ORTHO05D007929 4.6e-50 201.4 165 66.7
BolC9t57758H Brassica oleracea HOM05D006321 ORTHO05D007929 4.6e-50 201.4 165 66.7
CARHR271020 Cardamine hirsuta HOM05D006321 ORTHO05D007929 2.3e-49 199.1 157 68.2
Aa31LG3G13120 Aethionema arabicum HOM05D006321 ORTHO05D007929 1.5e-48 196.4 157 68.8
THA.LOC104817778 Tarenaya hassleriana HOM05D006321 ORTHO05D007929 1.0e-41 173.7 158 60.1
COL.COLO4_27457 Corchorus olitorius HOM05D006321 ORTHO05D007929 8.7e-41 170.6 157 58.0
Potri.018G143500 Populus trichocarpa HOM05D006321 ORTHO05D007929 1.9e-40 169.5 157 59.2
CiPaw.08G033200 Carya illinoinensis HOM05D006321 ORTHO05D007929 5.7e-40 167.9 157 55.4
Sed0024765 Sechium edule HOM05D006321 ORTHO05D007929 1.6e-39 166.4 154 55.8
GSVIVG01010872001 Vitis vinifera HOM05D006321 ORTHO05D007929 2.2e-39 166.0 155 56.1
Aqoxy3G01064 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 2.8e-39 165.6 157 54.8
Migut.L01889 Erythranthe guttata HOM05D006321 ORTHO05D007929 3.7e-39 165.2 157 56.7
Glyma.01G110600 Glycine max HOM05D006321 ORTHO05D007929 3.7e-39 165.2 158 56.3
Solyc07g008910.3 Solanum lycopersicum HOM05D006321 ORTHO05D007929 3.7e-39 165.2 157 54.8
Thecc.09G184700 Theobroma cacao HOM05D006321 ORTHO05D007929 3.7e-39 165.2 156 57.1
Sc03g0007150 Simmondsia chinensis HOM05D006321 ORTHO05D007929 4.8e-39 164.9 157 55.4
Cpa.g.sc95.16 Carica papaya HOM05D006321 ORTHO05D007929 6.3e-39 164.5 153 58.8
PGSC0003DMG400028738 Solanum tuberosum HOM05D006321 ORTHO05D007929 6.3e-39 164.5 157 56.1
CAN.G547.21 Capsicum annuum HOM05D006321 ORTHO05D007929 1.1e-38 163.7 158 55.7
Dinv25432 Davidia involucrata HOM05D006321 ORTHO05D007929 1.4e-38 163.3 157 54.8
Atru.chr7.791 Acer truncatum HOM05D006321 ORTHO05D007929 2.4e-38 162.5 157 55.4
CSS0046955 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 2.4e-38 162.5 157 54.8
TWI60G1509 Tripterygium wilfordii HOM05D006321 ORTHO05D007929 2.4e-38 162.5 157 54.8
TAR622G0244 Trochodendron aralioides HOM05D006321 ORTHO05D007929 2.4e-38 162.5 157 54.1
CSS0019729 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 3.1e-38 162.2 157 54.1
Duzib251G0486 Durio zibethinus HOM05D006321 ORTHO05D007929 3.1e-38 162.2 157 57.3
Gohir.A06G171500 Gossypium hirsutum HOM05D006321 ORTHO05D007929 3.1e-38 162.2 152 57.2
Gohir.D06G179600 Gossypium hirsutum HOM05D006321 ORTHO05D007929 3.1e-38 162.2 152 57.2
Gorai.010G210200 Gossypium raimondii HOM05D006321 ORTHO05D007929 3.1e-38 162.2 152 57.2
QL02p047686 Quercus lobata HOM05D006321 ORTHO05D007929 3.1e-38 162.2 155 55.5
Rhsim01G0118600 Rhododendron simsii HOM05D006321 ORTHO05D007929 3.1e-38 162.2 157 53.5
RcHm_v2.0_Chr4g0399821 Rosa chinensis HOM05D006321 ORTHO05D007929 3.1e-38 162.2 157 54.8
EL10Ac5g11827 Beta vulgaris HOM05D006321 ORTHO05D007929 4.1e-38 161.8 157 54.1
Eucgr.C00122 Eucalyptus grandis HOM05D006321 ORTHO05D007929 4.1e-38 161.8 157 54.1
Nitab4.5_0002365g0010 Nicotiana tabacum HOM05D006321 ORTHO05D007929 4.1e-38 161.8 158 55.1
CSS0021189 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 6.9e-38 161.0 158 54.4
Medtr3g465100 Medicago truncatula HOM05D006321 ORTHO05D007929 6.9e-38 161.0 157 54.8
Nitab4.5_0000366g0180 Nicotiana tabacum HOM05D006321 ORTHO05D007929 9.0e-38 160.6 158 55.7
Glyma.03G076300 Glycine max HOM05D006321 ORTHO05D007929 1.2e-37 160.2 158 54.4
Cc06_g21570 Coffea canephora HOM05D006321 ORTHO05D007929 1.5e-37 159.8 152 56.6
Phvul.006G013600 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 1.5e-37 159.8 157 55.4
VMungo0540G0928 Vigna mungo HOM05D006321 ORTHO05D007929 1.5e-37 159.8 157 55.4
CAN.G279.32 Capsicum annuum HOM05D006321 ORTHO05D007929 2.0e-37 159.5 158 55.1
FvH4_4g07380 Fragaria vesca HOM05D006321 ORTHO05D007929 2.0e-37 159.5 152 56.6
FAN12G2844 Fragaria x ananassa HOM05D006321 ORTHO05D007929 2.0e-37 159.5 152 56.6
FAN22G1279 Fragaria x ananassa HOM05D006321 ORTHO05D007929 2.0e-37 159.5 152 56.6
HPP92_002000 Vanilla planifolia HOM05D006321 ORTHO05D007929 2.0e-37 159.5 159 54.1
COL.COLO4_07534 Corchorus olitorius HOM05D006321 ORTHO05D007929 2.6e-37 159.1 141 59.6
MELO3C012967.2 Cucumis melo HOM05D006321 ORTHO05D007929 2.6e-37 159.1 154 53.9
CsaV3_3G025050 Cucumis sativus L. HOM05D006321 ORTHO05D007929 4.5e-37 158.3 154 53.9
Potri.006G076300 Populus trichocarpa HOM05D006321 ORTHO05D007929 4.5e-37 158.3 157 56.1
TPR.G32885 Trifolium pratense HOM05D006321 ORTHO05D007929 4.5e-37 158.3 157 55.4
Lalb_Chr04g0263391 Lupinus albus HOM05D006321 ORTHO05D007929 5.9e-37 157.9 155 52.9
arahy.Tifrunner.gnm1.ann1.CI6UTV Arachis hypogaea HOM05D006321 ORTHO05D007929 7.7e-37 157.5 155 53.5
FAN07G2214 Fragaria x ananassa HOM05D006321 ORTHO05D007929 1.0e-36 157.1 150 56.7
Manes.02G106300 Manihot esculenta HOM05D006321 ORTHO05D007929 1.3e-36 156.8 159 54.7
Phvul.003G138800 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 1.3e-36 156.8 157 53.5
Phvul.003G139178 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 1.3e-36 156.8 157 53.5
Prupe.1G076700 Prunus persica HOM05D006321 ORTHO05D007929 2.9e-36 155.6 157 52.2
PGR142G1933 Punica granatum HOM05D006321 ORTHO05D007929 2.9e-36 155.6 157 52.9
Nn2g12444 Nelumbo nucifera HOM05D006321 ORTHO05D007929 3.8e-36 155.2 135 59.3
Psat2g182520 Pisum sativum HOM05D006321 ORTHO05D004512 3.8e-36 155.2 157 52.9
Psat4g027120 Pisum sativum HOM05D006321 ORTHO05D007929 3.8e-36 155.2 157 52.9
Sopen07g004840 Solanum pennellii HOM05D003168 ORTHO05D003590 3.8e-36 155.2 136 58.8
MSTRG.10445 Avicennia marina HOM05D006321 ORTHO05D007929 5.0e-36 154.8 157 53.5
SGA_v2.0_scaffold21G09650 Striga asiatica HOM05D006321 ORTHO05D007929 6.5e-36 154.5 157 52.9
Ca_14974_v3 Cicer arietinum L. HOM05D006321 ORTHO05D007929 1.4e-35 153.3 157 53.5
MBI17_g07973_MAGBIO Magnolia biondii HOM05D006321 ORTHO05D007929 3.2e-35 152.1 159 52.2
arahy.Tifrunner.gnm1.ann1.N3I1N2 Arachis hypogaea HOM05D006321 ORTHO05D007929 4.2e-35 151.8 148 54.1
Lj6g0010246 Lotus japonicus HOM05D006321 ORTHO05D007929 9.4e-35 150.6 154 53.9
AUR62030699 Chenopodium quinoa HOM05D006321 ORTHO05D007929 1.2e-34 150.2 157 49.0
Ciclev10008911m.g Citrus clementina HOM05D006321 ORTHO05D007929 1.2e-34 150.2 149 53.7
AUR62030694 Chenopodium quinoa HOM05D006321 ORTHO05D007929 2.7e-34 149.1 157 48.4
HanXRQChr16g0529271 Helianthus annuus HOM05D006321 ORTHO05D007929 3.6e-34 148.7 157 47.8
CANSAT11G0316 Cannabis sativa HOM05D006321 ORTHO05D007929 7.9e-34 147.5 159 51.6
Actinidia01283 Actinidia chinensis HOM05D006321 ORTHO05D007929 1.0e-33 147.1 158 51.3
Os06g0482200 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 1.4e-33 146.7 155 49.7
ECA240G2363 Erigeron canadensis HOM05D006321 ORTHO05D007929 1.8e-33 146.4 154 50.6
Ah.12g059430 Amaranthus hybridus HOM05D006321 ORTHO05D007929 3.9e-33 145.2 151 48.3
Lsat_1_v5_gn_7_55681 Lactuca sativa HOM05D006321 ORTHO05D007929 3.9e-33 145.2 157 51.0
HanXRQChr03g0068421 Helianthus annuus HOM05D006321 ORTHO05D007929 5.1e-33 144.8 148 50.0
AUR62036340 Chenopodium quinoa HOM05D006321 ORTHO05D007929 6.7e-33 144.4 135 53.3
Os10g0162834 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 6.7e-33 144.4 155 49.0
Hund14984 Selenicereus undatus HOM05D006321 ORTHO05D007929 6.7e-33 144.4 135 52.6
PSO339G6079 Papaver somniferum HOM05D006321 ORTHO05D007929 8.8e-33 144.1 160 51.2
ECA234G0872 Erigeron canadensis HOM05D006321 ORTHO05D007929 1.1e-32 143.7 154 50.0
MD13G1243200 Malus domestica HOM05D006321 ORTHO05D007929 1.9e-32 142.9 135 56.3
PSO384G3851 Papaver somniferum HOM05D006321 ORTHO05D007929 2.5e-32 142.5 160 50.6
MD16G1249800 Malus domestica HOM05D006321 ORTHO05D007929 9.7e-32 140.6 148 54.1
Sabra18G0117000 Salix brachista HOM05D003168 ORTHO05D003525 6.3e-31 137.9 133 57.9
CDE06G2300 Ceratophyllum demersum HOM05D006321 ORTHO05D007929 1.8e-30 136.3 138 53.6
unitig_736.g22252 Utricularia gibba HOM05D006321 ORTHO05D007929 4.1e-30 135.2 140 50.7
Migut.G01073 Erythranthe guttata HOM05D006321 ORTHO05D007929 1.5e-29 133.3 116 61.2
Zm00001eb161640 Zea mays HOM05D006321 ORTHO05D007929 2.0e-29 132.9 148 48.0
Psat5g235880 Pisum sativum HOM05D006321 ORTHO05D007929 2.2e-28 129.4 116 56.9
SEGI_34333 Sequoiadendron giganteum HOM05D006321 ORTHO05D007929 2.9e-28 129.0 155 47.1
Sabra06G0057200 Salix brachista HOM05D006321 ORTHO05D007929 5.0e-28 128.3 183 44.8
Haze_22010 Corylus avellana HOM05D006321 ORTHO05D007929 3.2e-27 125.6 114 57.9
Oeu030095.1 Olea europaea HOM05D006321 ORTHO05D007929 4.7e-26 121.7 113 54.9
Oeu044678.1 Olea europaea HOM05D006321 ORTHO05D007929 1.5e-24 116.7 114 53.5
Mapoly0003s0233 Marchantia polymorpha HOM05D006321 ORTHO05D007929 7.4e-24 114.4 141 44.7
vmacro20823 Vaccinium macrocarpon HOM05D006321 ORTHO05D007929 7.4e-24 114.4 114 51.8
Mapoly0003s0169 Marchantia polymorpha HOM05D006321 ORTHO05D007929 3.1e-22 109.0 136 44.9
PSO541G2755 Papaver somniferum HOM05D006321 ORTHO05D007929 5.3e-22 108.2 116 52.6
ATR1152G025 Amborella trichopoda HOM05D006321 ORTHO05D007929 5.9e-21 104.8 96 55.2
Pp3c22_13020 Physcomitrium patens HOM05D006321 ORTHO05D007929 7.7e-21 104.4 147 43.5
FAN17G2672 Fragaria x ananassa HOM05D006321 ORTHO05D007929 3.8e-20 102.1 147 42.9
Lj6A87G16 Lonicera japonica HOM05D006321 ORTHO05D007929 5.0e-20 101.7 95 55.8
Aqoxy108s003 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 2.5e-19 99.4 80 57.5
Peaxi162Scf00324g00017 Petunia axillaris HOM05D006321 ORTHO05D007929 2.5e-19 99.4 80 62.5
TAR629G2308 Trochodendron aralioides HOM05D006321 ORTHO05D007929 3.0e-17 92.4 130 41.5
Sopen00g012850 Solanum pennellii HOM05D006321 ORTHO05D007929 2.4e-14 82.8 45 75.6
COL.COLO4_32845 Corchorus olitorius HOM05D006321 ORTHO05D007929 3.1e-14 82.4 68 61.8
BolC2t07570H Brassica oleracea HOM05D006321 ORTHO05D007929 5.3e-14 81.6 54 74.1
Dinv41168 Davidia involucrata HOM05D000015 ORTHO05D003525 1.2e-13 80.5 61 67.2
DCAR_005801 Daucus carota HOM05D006321 ORTHO05D007929 4.5e-13 78.6 100 43.0
CBR_g19745 Chara braunii HOM05D006321 ORTHO05D007929 1.3e-12 77.0 132 38.6
Lj6A100T20 Lonicera japonica HOM05D006321 ORTHO05D007929 6.7e-09 64.7 42 76.2
C02p14450 Brassica napus HOM05D006321 ORTHO05D007929 4.1e-06 55.5 67 47.8


User provided reference genes

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