Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 6.4e-91 337.4 172 100.0
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 1.0e-72 276.9 172 84.9
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 3.9e-72 275.0 172 84.3
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 3.9e-72 275.0 172 84.3
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 4.9e-67 258.1 172 80.2
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 4.9e-67 258.1 172 80.2
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 9.3e-58 227.3 170 73.5
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 3.9e-56 221.9 172 69.8
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 3.9e-56 221.9 172 69.8
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 4.3e-55 218.4 179 70.4
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 3.1e-53 212.2 185 65.9
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 1.2e-52 210.3 175 70.9
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 7.6e-52 207.6 174 69.5
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 1.3e-51 206.8 176 68.8
BolC3t13964H Brassica oleracea HOM05D003238 ORTHO05D003571 4.9e-51 204.9 172 66.3
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 1.1e-50 203.8 171 69.6
BcaNung05246 Brassica carinata HOM05D003238 ORTHO05D003571 6.0e-49 198.0 172 65.1
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 6.0e-49 198.0 171 67.8
BcaC01g06458 Brassica carinata HOM05D003238 ORTHO05D003571 3.9e-48 195.3 172 64.5
C03p15230 Brassica napus HOM05D003238 ORTHO05D003571 3.9e-48 195.3 172 64.5
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 8.7e-48 194.1 171 67.3
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 3.2e-42 175.6 182 59.3
Carub.0008s1748 Capsella rubella HOM05D003238 ORTHO05D003571 7.4e-39 164.5 175 57.1
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 3.7e-38 162.2 176 58.0
AL8G32890 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 1.2e-36 157.1 173 57.2
AT5G57000 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 6.7e-32 141.4 173 53.8
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 5.7e-23 111.7 180 40.6
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 1.3e-22 110.5 164 47.0
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 4.2e-18 95.5 188 35.6
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 4.2e-18 95.5 188 35.6
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 7.9e-17 91.3 164 42.7
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 7.9e-17 91.3 164 42.7
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 1.0e-16 90.9 110 47.3
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.4e-16 90.5 174 39.7
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 6.7e-16 88.2 236 32.2
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 8.8e-16 87.8 134 44.0
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 3.3e-15 85.9 210 33.3
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 5.7e-15 85.1 216 33.3
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 7.4e-15 84.7 145 39.3
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 7.4e-15 84.7 130 43.1
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.3e-14 84.0 204 34.8
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.8e-14 82.0 204 34.8
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.8e-14 82.0 147 40.1
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 4.1e-13 79.0 132 40.2
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 4.1e-13 79.0 135 38.5
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 6.9e-13 78.2 217 34.6
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.5e-12 77.0 204 33.8
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 1.5e-12 77.0 129 40.3
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 1.5e-12 77.0 126 44.4
Sed0023757 Sechium edule HOM05D003238 ORTHO05D003571 1.5e-12 77.0 145 41.4
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 2.0e-12 76.6 134 41.8
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 2.0e-12 76.6 168 36.3
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 3.4e-12 75.9 225 32.0
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 3.4e-12 75.9 181 35.4
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 1.0e-11 74.3 119 40.3
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.3e-11 73.9 124 37.9
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.2e-11 73.2 62 56.5
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 2.2e-11 73.2 130 40.0
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 3.8e-11 72.4 71 60.6
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 3.8e-11 72.4 151 35.8
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 6.5e-11 71.6 213 30.5
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.9e-10 70.1 55 67.3
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 2.5e-10 69.7 182 34.1
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 4.2e-10 68.9 215 30.2
Sc14g0000680 Simmondsia chinensis HOM05D051806 ORTHO05D003571 5.5e-10 68.6 202 28.7
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 1.2e-09 67.4 79 45.6
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 1.6e-09 67.0 121 40.5
Aa31LG3G12880 Aethionema arabicum HOM05D003238 ORTHO05D003571 2.1e-09 66.6 45 75.6
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 2.1e-09 66.6 125 40.0
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 2.1e-09 66.6 69 55.1
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 2.7e-09 66.2 95 42.1
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 2.7e-09 66.2 138 35.5
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 3.6e-09 65.9 192 33.3
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 3.6e-09 65.9 141 36.2
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 4.7e-09 65.5 166 34.9
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 4.7e-09 65.5 65 58.5
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 8.0e-09 64.7 140 35.7
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 1.0e-08 64.3 88 44.3
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 1.0e-08 64.3 118 41.5
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.0e-08 64.3 118 41.5
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 3.9e-08 62.4 143 37.8
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 3.9e-08 62.4 134 38.8
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 5.2e-08 62.0 124 42.7
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 8.8e-08 61.2 139 34.5
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 1.1e-07 60.8 54 59.3
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 1.1e-07 60.8 71 49.3
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 1.1e-07 60.8 174 31.0
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 1.5e-07 60.5 75 52.0
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.5e-07 60.5 75 52.0
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.5e-07 60.5 75 52.0
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 1.5e-07 60.5 117 40.2
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.0e-07 60.1 75 52.0
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.6e-07 59.7 64 50.0
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 3.3e-07 59.3 66 50.0
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 3.3e-07 59.3 91 39.6
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 4.4e-07 58.9 183 31.7
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 9.7e-07 57.8 117 34.2
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 9.7e-07 57.8 59 52.5
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.3e-06 57.4 76 46.1
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 1.3e-06 57.4 113 42.5
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.3e-06 57.4 159 30.2
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.7e-06 57.0 134 32.8
Sc18g0002230 Simmondsia chinensis HOM05D003238 ORTHO05D003571 2.2e-06 56.6 108 35.2
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 2.8e-06 56.2 81 45.7
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 3.7e-06 55.8 174 30.5
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 4.8e-06 55.5 76 44.7
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 4.8e-06 55.5 76 44.7
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 6.3e-06 55.1 76 42.1
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 8.2e-06 54.7 230 29.1


User provided reference genes

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