Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22276 Brassica carinata HOM05D002739 ORTHO05D002877 1.1e-53 213.0 101 100.0
AT5G56480 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 1.1e-39 166.4 95 81.1
AL8G32240 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 2.4e-37 158.7 102 72.5
BolC9t57655H Brassica oleracea HOM05D002739 ORTHO05D002877 4.1e-37 157.9 96 74.0
A10p13840 Brassica napus HOM05D002739 ORTHO05D002877 1.5e-36 156.0 96 72.9
BraA10t43477Z Brassica rapa HOM05D002739 ORTHO05D002877 1.5e-36 156.0 96 72.9
CARHR270120 Cardamine hirsuta HOM05D002739 ORTHO05D002877 6.5e-35 150.6 96 69.8
C09p48080 Brassica napus HOM05D002739 ORTHO05D002877 5.5e-34 147.5 90 74.4
BcaC04g20084 Brassica carinata HOM05D002739 ORTHO05D002877 1.6e-33 146.0 89 74.2
CARHR270130 Cardamine hirsuta HOM05D002739 ORTHO05D002877 3.9e-32 141.4 97 69.1
AL1G46440 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 6.7e-32 140.6 98 67.3
AT1G32280 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 8.7e-32 140.2 98 67.3
Carub.0001s3061 Capsella rubella HOM05D002739 ORTHO05D002877 2.2e-30 135.6 98 66.3
BcaC04g20086 Brassica carinata HOM05D002739 ORTHO05D002877 7.4e-15 84.0 47 78.7
Cpa.g.sc84.11 Carica papaya HOM05D002739 ORTHO05D002877 9.1e-13 77.0 84 46.4
TWI74G0698 Tripterygium wilfordii HOM05D002739 ORTHO05D002877 4.5e-12 74.7 88 40.9
Duzib168G0958 Durio zibethinus HOM05D002739 ORTHO05D002877 5.9e-12 74.3 91 42.9
QL04p013222 Quercus lobata HOM05D002739 ORTHO05D002877 5.9e-12 74.3 94 40.4
QL04p013260 Quercus lobata HOM05D002739 ORTHO05D002877 1.0e-11 73.6 92 39.1
Haze_23193 Corylus avellana HOM05D002739 ORTHO05D002877 2.2e-11 72.4 58 51.7
FvH4_3g29300 Fragaria vesca HOM05D002739 ORTHO05D002877 2.2e-11 72.4 87 35.6
QL01p017875 Quercus lobata HOM05D002739 ORTHO05D002877 2.2e-11 72.4 95 35.8
Haze_18708 Corylus avellana HOM05D002739 ORTHO05D002877 6.5e-11 70.9 77 42.9
Manes.04G135500 Manihot esculenta HOM05D002739 ORTHO05D002877 6.5e-11 70.9 57 50.9
Manes.11G031500 Manihot esculenta HOM05D002739 ORTHO05D002877 6.5e-11 70.9 57 49.1
PSO384G0435 Papaver somniferum HOM05D002739 ORTHO05D002877 8.5e-11 70.5 92 38.0
CiPaw.13G010100 Carya illinoinensis HOM05D002739 ORTHO05D002877 1.1e-10 70.1 91 36.3
TWI38G1066 Tripterygium wilfordii HOM05D002739 ORTHO05D002877 1.5e-10 69.7 92 37.0
Cfa009830 Carpinus fangiana HOM05D002739 ORTHO05D002877 2.5e-10 68.9 86 34.9
Ciclev10017652m.g Citrus clementina HOM05D002739 ORTHO05D002877 2.5e-10 68.9 79 44.3
Potri.009G049300 Populus trichocarpa HOM05D002739 ORTHO05D002877 2.5e-10 68.9 85 38.8
QL04p013280 Quercus lobata HOM05D002739 ORTHO05D002877 2.5e-10 68.9 90 37.8
Dinv36202 Davidia involucrata HOM05D002739 ORTHO05D002877 3.2e-10 68.6 88 38.6
QL04p013297 Quercus lobata HOM05D002739 ORTHO05D002877 3.2e-10 68.6 92 37.0
COL.COLO4_04118 Corchorus olitorius HOM05D002739 ORTHO05D002877 4.2e-10 68.2 55 50.9
RcHm_v2.0_Chr7g0218541 Rosa chinensis HOM05D002739 ORTHO05D002877 4.2e-10 68.2 92 33.7
Manes.14G006000 Manihot esculenta HOM05D002739 ORTHO05D002877 9.4e-10 67.0 82 36.6
PSO339G1495 Papaver somniferum HOM05D002739 ORTHO05D002877 9.4e-10 67.0 93 37.6
QL04p013227 Quercus lobata HOM05D002739 ORTHO05D002877 9.4e-10 67.0 100 35.0
SGA_v2.0_scaffold24G10703 Striga asiatica HOM05D002739 ORTHO05D002877 9.4e-10 67.0 97 36.1
FAN10G1712 Fragaria x ananassa HOM05D002739 ORTHO05D002877 1.2e-09 66.6 88 33.0
Potri.001G023200 Populus trichocarpa HOM05D002739 ORTHO05D002877 1.2e-09 66.6 57 47.4
CSS0000269 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 1.6e-09 66.2 58 50.0
CSS0014844 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 1.6e-09 66.2 58 50.0
CSS0046368 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 1.6e-09 66.2 58 50.0
CSS0048223 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 1.6e-09 66.2 58 50.0
Haze_03109 Corylus avellana HOM05D002215 ORTHO05D002238 1.6e-09 66.2 84 40.5
Manes.14G006100 Manihot esculenta HOM05D002739 ORTHO05D002877 1.6e-09 66.2 86 34.9
PGR031G3191 Punica granatum HOM05D002739 ORTHO05D002877 1.6e-09 66.2 93 35.5
TAR623G0756 Trochodendron aralioides HOM05D002739 ORTHO05D002877 3.6e-09 65.1 94 31.9
PGR031G2149 Punica granatum HOM05D002739 ORTHO05D002877 4.7e-09 64.7 73 42.5
FvH4_7g02210 Fragaria vesca HOM05D002739 ORTHO05D002877 6.1e-09 64.3 88 30.7
Cfa021004 Carpinus fangiana HOM05D002739 ORTHO05D002877 8.0e-09 63.9 73 39.7
Sabra01G0017500 Salix brachista HOM05D002739 ORTHO05D002877 8.0e-09 63.9 81 34.6
Ciclev10017226m.g Citrus clementina HOM05D002739 ORTHO05D002877 1.0e-08 63.5 83 34.9
Zm00001eb369450 Zea mays HOM05D002739 ORTHO05D002877 1.0e-08 63.5 65 44.6
HanXRQChr01g0020811 Helianthus annuus HOM05D002739 ORTHO05D002877 1.4e-08 63.2 59 44.1
Nn2g15045 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.4e-08 63.2 95 34.7
Prupe.2G028300 Prunus persica HOM05D002739 ORTHO05D002877 1.4e-08 63.2 86 31.4
THA.LOC104826714 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 1.4e-08 63.2 57 45.6
Aqoxy2G00284 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 1.8e-08 62.8 94 33.0
TAR623G1716 Trochodendron aralioides HOM05D002739 ORTHO05D002877 1.8e-08 62.8 90 33.3
CANSAT80G1481 Cannabis sativa HOM05D002739 ORTHO05D002877 2.3e-08 62.4 91 37.4
Ca_11246_v3 Cicer arietinum L. HOM05D002739 ORTHO05D002877 2.3e-08 62.4 93 31.2
ECA236G2864 Erigeron canadensis HOM05D002739 ORTHO05D002877 2.3e-08 62.4 59 44.1
MBI13_g04764_MAGBIO Magnolia biondii HOM05D002739 ORTHO05D002877 2.3e-08 62.4 86 34.9
Nn7g36463 Nelumbo nucifera HOM05D002739 ORTHO05D002877 2.3e-08 62.4 77 41.6
THA.LOC104819118 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 2.3e-08 62.4 57 45.6
GSVIVG01000855001 Vitis vinifera HOM05D002739 ORTHO05D002877 2.3e-08 62.4 57 38.6
Medtr4g076150 Medicago truncatula HOM05D002739 ORTHO05D002877 3.0e-08 62.0 93 33.3
Aqoxy2G00278 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 4.0e-08 61.6 63 44.4
ECA238G2259 Erigeron canadensis HOM05D002739 ORTHO05D002877 4.0e-08 61.6 59 42.4
HanXRQChr14g0441021 Helianthus annuus HOM05D002739 ORTHO05D002877 4.0e-08 61.6 59 42.4
Duzib168G0444 Durio zibethinus HOM05D002739 ORTHO05D002877 5.2e-08 61.2 83 32.5
Nn7g36443 Nelumbo nucifera HOM05D002739 ORTHO05D002877 5.2e-08 61.2 94 37.2
Nn7g38449 Nelumbo nucifera HOM05D002739 ORTHO05D002877 5.2e-08 61.2 94 37.2
Thecc.09G243000 Theobroma cacao HOM05D002739 ORTHO05D002877 5.2e-08 61.2 57 42.1
ATR0721G147 Amborella trichopoda HOM05D002739 ORTHO05D002877 6.7e-08 60.8 90 33.3
Aqoxy2G02507 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 6.7e-08 60.8 87 34.5
BcaB03g12664 Brassica carinata HOM05D002739 ORTHO05D002877 6.7e-08 60.8 57 42.1
Gohir.A07G121800 Gossypium hirsutum HOM05D002739 ORTHO05D002877 6.7e-08 60.8 83 31.3
Gohir.D07G126100 Gossypium hirsutum HOM05D002739 ORTHO05D002877 6.7e-08 60.8 83 31.3
QL04p013244 Quercus lobata HOM05D002739 ORTHO05D002877 6.7e-08 60.8 92 33.7
MD02G1296300 Malus domestica HOM05D002739 ORTHO05D002877 8.8e-08 60.5 57 36.8
Nn7g36442 Nelumbo nucifera HOM05D002739 ORTHO05D002877 8.8e-08 60.5 95 34.7
Nn7g36457 Nelumbo nucifera HOM05D002739 ORTHO05D002877 8.8e-08 60.5 95 34.7
Nn7g38448 Nelumbo nucifera HOM05D002739 ORTHO05D002877 8.8e-08 60.5 95 34.7
Psat7g179880 Pisum sativum HOM05D002739 ORTHO05D002877 8.8e-08 60.5 93 33.3
Cpa.g.sc84.10 Carica papaya HOM05D002739 ORTHO05D002877 1.1e-07 60.1 57 43.9
PSO384G3631 Papaver somniferum HOM05D002739 ORTHO05D002877 1.1e-07 60.1 85 35.3
THA.LOC104826487 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 1.1e-07 60.1 95 30.5
AT4G30880 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 1.5e-07 59.7 57 42.1
Ciclev10017233m.g Citrus clementina HOM05D002739 ORTHO05D002877 1.5e-07 59.7 83 33.7
Oeu027475.1 Olea europaea HOM05D002739 ORTHO05D002877 1.5e-07 59.7 91 36.3
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.5e-07 59.7 97 32.0
AL7G21220 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 2.0e-07 59.3 57 42.1
Thhalv10026851m.g Eutrema salsugineum HOM05D002739 ORTHO05D002877 2.0e-07 59.3 57 40.4
MD02G1296400 Malus domestica HOM05D002739 ORTHO05D002877 2.0e-07 59.3 80 30.0
Nn2g15046 Nelumbo nucifera HOM05D002739 ORTHO05D002877 2.0e-07 59.3 96 32.3
Nn7g36459 Nelumbo nucifera HOM05D002739 ORTHO05D002877 2.0e-07 59.3 57 40.4
Sp7g28750 Schrenkiella parvula HOM05D002739 ORTHO05D002877 2.0e-07 59.3 57 40.4
Cc06_g12260 Coffea canephora HOM05D004409 ORTHO05D005292 2.6e-07 58.9 58 37.9
Eucgr.G03260 Eucalyptus grandis HOM05D002739 ORTHO05D002877 2.6e-07 58.9 58 39.7
Atru.chr6.1312 Acer truncatum HOM05D002739 ORTHO05D002877 3.3e-07 58.5 94 28.7
BcaB03g12793 Brassica carinata HOM05D002739 ORTHO05D002877 3.3e-07 58.5 59 35.6
BcaC09g51875 Brassica carinata HOM05D002739 ORTHO05D002877 3.3e-07 58.5 57 43.9
Phvul.011G024000 Phaseolus vulgaris HOM05D002739 ORTHO05D002877 3.3e-07 58.5 95 31.6
Thecc.09G243100 Theobroma cacao HOM05D002739 ORTHO05D002877 3.3e-07 58.5 55 49.1
Carub.0007s0967 Capsella rubella HOM05D002739 ORTHO05D002877 4.4e-07 58.2 57 40.4
Thhalv10026604m.g Eutrema salsugineum HOM05D002739 ORTHO05D002877 4.4e-07 58.2 59 37.3
PSO339G3199 Papaver somniferum HOM05D002739 ORTHO05D002877 4.4e-07 58.2 65 40.0
Aa31LG2G19500 Aethionema arabicum HOM05D002739 ORTHO05D002877 5.7e-07 57.8 96 31.2
AL7G17970 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 5.7e-07 57.8 59 35.6
BcaC01g00985 Brassica carinata HOM05D002739 ORTHO05D002877 5.7e-07 57.8 59 35.6
CARHR241650 Cardamine hirsuta HOM05D002739 ORTHO05D002877 5.7e-07 57.8 59 35.6
Ciclev10017446m.g Citrus clementina HOM05D002739 ORTHO05D002877 5.7e-07 57.8 64 37.5
Hma1.2p1_0817F.1_g223085 Hydrangea macrophylla HOM05D002739 ORTHO05D002877 5.7e-07 57.8 54 46.3
Hma1.2p1_2313F.1_g319610 Hydrangea macrophylla HOM05D002739 ORTHO05D002877 5.7e-07 57.8 54 46.3
QL04p013238 Quercus lobata HOM05D002739 ORTHO05D002877 5.7e-07 57.8 87 35.6
Sp7g31290 Schrenkiella parvula HOM05D002739 ORTHO05D002877 5.7e-07 57.8 59 35.6
EL10Ac4g08094 Beta vulgaris HOM05D002739 ORTHO05D002877 7.5e-07 57.4 57 42.1
CANSAT21G0737 Cannabis sativa HOM05D004409 ORTHO05D005292 7.5e-07 57.4 90 32.2
CARHR238780 Cardamine hirsuta HOM05D002739 ORTHO05D002877 7.5e-07 57.4 57 42.1
COL.COLO4_36502 Corchorus olitorius HOM05D002739 ORTHO05D002877 7.5e-07 57.4 57 42.1
Glyma.11G095900 Glycine max HOM05D002739 ORTHO05D002877 7.5e-07 57.4 93 29.0
Hund15707 Selenicereus undatus HOM05D002739 ORTHO05D002877 7.5e-07 57.4 58 39.7
ATR0721G129 Amborella trichopoda HOM05D002739 ORTHO05D002877 9.7e-07 57.0 53 43.4
CiPaw.13G010000 Carya illinoinensis HOM05D002739 ORTHO05D002877 9.7e-07 57.0 66 42.4
Lj3g0006865 Lotus japonicus HOM05D002739 ORTHO05D002877 9.7e-07 57.0 93 30.1
GSVIVG01000856001 Vitis vinifera HOM05D002739 ORTHO05D002877 9.7e-07 57.0 66 40.9
Actinidia16366 Actinidia chinensis HOM05D002739 ORTHO05D002877 1.3e-06 56.6 84 29.8
Aqoxy2G00287 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 1.3e-06 56.6 93 26.9
Prupe.4G257900 Prunus persica HOM05D002739 ORTHO05D002877 1.3e-06 56.6 53 43.4
Manes.01G089900 Manihot esculenta HOM05D004409 ORTHO05D005292 1.7e-06 56.2 90 31.1
Nn7g36466 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.7e-06 56.2 73 42.5
GSVIVG01004835001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.7e-06 56.2 87 31.0
CANSAT21G0033 Cannabis sativa HOM05D004409 ORTHO05D005292 2.2e-06 55.8 90 31.1
Duzib205G0528 Durio zibethinus HOM05D004409 ORTHO05D005292 2.2e-06 55.8 92 30.4
Lalb_Chr04g0263901 Lupinus albus HOM05D002739 ORTHO05D002877 2.2e-06 55.8 76 35.5
Prupe.2G028100 Prunus persica HOM05D002739 ORTHO05D002877 2.2e-06 55.8 90 34.4
TAR622G0220 Trochodendron aralioides HOM05D002739 ORTHO05D002877 2.2e-06 55.8 93 31.2
AT2G13295 Arabidopsis thaliana HOM05D011315 ORTHO05D013409 2.8e-06 55.5 71 33.8
AT4G33550 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 2.8e-06 55.5 57 35.1
Ciclev10017249m.g Citrus clementina HOM05D002739 ORTHO05D002877 2.8e-06 55.5 61 39.3
PSO384G1774 Papaver somniferum HOM05D002739 ORTHO05D002877 2.8e-06 55.5 91 31.9
PSO384G3480 Papaver somniferum HOM05D002739 ORTHO05D002877 2.8e-06 55.5 57 38.6
PSO384G3657 Papaver somniferum HOM05D002739 ORTHO05D002877 2.8e-06 55.5 91 31.9
Gorai.008G230500 Gossypium raimondii HOM05D004409 ORTHO05D005292 3.7e-06 55.1 92 30.4
GSVIVG01004832001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.7e-06 55.1 92 28.3
Actinidia19441 Actinidia chinensis HOM05D002739 ORTHO05D002877 4.8e-06 54.7 57 40.4
Ciclev10018012m.g Citrus clementina HOM05D002739 ORTHO05D002877 4.8e-06 54.7 60 38.3
Migut.D00796 Erythranthe guttata HOM05D002739 ORTHO05D002877 4.8e-06 54.7 53 37.7
Gohir.A12G212400 Gossypium hirsutum HOM05D004409 ORTHO05D005292 4.8e-06 54.7 92 29.3
Sabra09G0035300 Salix brachista HOM05D002739 ORTHO05D002877 4.8e-06 54.7 60 40.0
Sabra09G0035400 Salix brachista HOM05D002739 ORTHO05D002877 4.8e-06 54.7 60 40.0
Sabra09G0035500 Salix brachista HOM05D002739 ORTHO05D002877 4.8e-06 54.7 60 40.0
Ciclev10017598m.g Citrus clementina HOM05D002739 ORTHO05D002877 6.3e-06 54.3 61 41.0
Gohir.D12G214900 Gossypium hirsutum HOM05D004409 ORTHO05D005292 6.3e-06 54.3 90 30.0
Lsat_1_v5_gn_1_97381 Lactuca sativa HOM05D002739 ORTHO05D002877 6.3e-06 54.3 51 45.1
PSO339G0568 Papaver somniferum HOM05D002739 ORTHO05D002877 6.3e-06 54.3 81 32.1
PSO349G0104 Papaver somniferum HOM05D002739 ORTHO05D002877 6.3e-06 54.3 81 29.6
BcaB03g12794 Brassica carinata HOM05D002739 ORTHO05D002877 8.2e-06 53.9 59 30.5


User provided reference genes

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