Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 4.5e-37 157.5 86 100.0
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 2.0e-32 142.1 95 86.3
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 3.3e-32 141.4 95 85.3
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 9.7e-32 139.8 95 83.2
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 2.8e-31 138.3 95 82.1
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 6.3e-31 137.1 95 82.1
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 6.3e-31 137.1 95 81.1
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 9.1e-30 133.3 95 80.0
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 1.6e-29 132.5 96 78.1
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 1.6e-29 132.5 95 80.0
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 1.6e-29 132.5 96 78.1
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 2.6e-29 131.7 95 80.0
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 5.9e-29 130.6 96 77.1
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 5.9e-29 130.6 96 77.1
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 7.7e-29 130.2 95 75.8
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 1.0e-28 129.8 95 78.9
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 1.3e-28 129.4 96 76.0
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 8.5e-28 126.7 95 76.8
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 1.2e-24 116.3 95 67.4
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 5.7e-24 114.0 95 67.4
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 3.7e-23 111.3 95 64.2
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 8.3e-23 110.2 95 66.3
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 1.4e-22 109.4 95 64.2
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 2.4e-22 108.6 96 65.6
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 5.9e-21 104.0 96 64.6
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.3e-20 102.8 90 67.8
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 5.0e-20 100.9 95 60.0
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 8.5e-20 100.1 69 76.8
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 1.5e-19 99.4 95 58.9
BolC3t13700H Brassica oleracea HOM05D003660 ORTHO05D003415 5.5e-19 97.4 140 49.3
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 2.1e-18 95.5 97 57.7
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 4.7e-18 94.4 96 57.3
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 1.0e-17 93.2 89 59.6
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 1.8e-17 92.4 87 59.8
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 2.3e-17 92.0 74 64.9
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 2.3e-17 92.0 74 66.2
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 3.0e-17 91.7 85 60.0
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 3.0e-17 91.7 74 66.2
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 4.0e-17 91.3 70 68.6
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 4.0e-17 91.3 89 59.6
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 8.8e-17 90.1 89 57.3
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.2e-16 89.7 92 57.6
BraA02t05648Z Brassica rapa HOM05D003660 ORTHO05D003415 1.5e-16 89.4 52 92.3
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.5e-16 89.4 89 56.2
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 2.0e-16 89.0 85 57.6
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 2.0e-16 89.0 85 57.6
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 2.6e-16 88.6 74 63.5
BcaB08g37469 Brassica carinata HOM05D003660 ORTHO05D003415 4.4e-16 87.8 69 79.7
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 4.4e-16 87.8 83 59.0
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 4.4e-16 87.8 85 58.8
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 4.4e-16 87.8 96 54.2
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 9.8e-16 86.7 117 47.9
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 9.8e-16 86.7 117 47.9
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 1.7e-15 85.9 77 62.3
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 2.2e-15 85.5 70 62.9
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 2.2e-15 85.5 92 53.3
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 2.2e-15 85.5 74 60.8
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.8e-15 85.1 69 60.9
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 3.7e-15 84.7 70 61.4
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 3.7e-15 84.7 92 53.3
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 3.7e-15 84.7 92 53.3
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 3.7e-15 84.7 74 62.2
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 4.8e-15 84.3 89 55.1
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 4.8e-15 84.3 92 55.4
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 4.8e-15 84.3 92 55.4
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 6.3e-15 84.0 69 60.9
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 6.3e-15 84.0 70 62.9
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 6.3e-15 84.0 91 54.9
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 8.3e-15 83.6 74 59.5
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 8.3e-15 83.6 74 60.8
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 8.3e-15 83.6 74 60.8
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 1.1e-14 83.2 92 52.2
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 1.8e-14 82.4 89 53.9
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.8e-14 82.4 89 53.9
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.8e-14 82.4 89 53.9
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 2.4e-14 82.0 94 48.9
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 2.4e-14 82.0 70 60.0
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 3.1e-14 81.6 74 59.5
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 3.1e-14 81.6 86 54.7
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 3.1e-14 81.6 74 59.5
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 5.4e-14 80.9 88 54.5
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 5.4e-14 80.9 91 53.8
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 7.0e-14 80.5 70 62.9
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 7.0e-14 80.5 74 59.5
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 7.0e-14 80.5 70 61.4
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 9.1e-14 80.1 70 62.9
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 9.1e-14 80.1 92 52.2
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.6e-13 79.3 74 60.8
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 2.0e-13 79.0 74 60.8
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 2.0e-13 79.0 74 59.5
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 3.5e-13 78.2 89 52.8
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 3.5e-13 78.2 92 52.2
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 4.5e-13 77.8 74 59.5
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 4.5e-13 77.8 74 56.8
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 1.0e-12 76.6 74 56.8
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 1.3e-12 76.3 69 58.0
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.3e-12 76.3 92 50.0
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 2.3e-12 75.5 58 65.5
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 2.9e-12 75.1 92 51.1
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 3.8e-12 74.7 99 49.5
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 5.0e-12 74.3 74 52.7
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 5.0e-12 74.3 87 52.9
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 6.6e-12 73.9 96 49.0
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 8.6e-12 73.6 96 49.0
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 8.6e-12 73.6 67 53.7
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 1.5e-11 72.8 74 55.4
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 3.3e-11 71.6 91 50.5
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 3.3e-11 71.6 92 44.6
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 3.3e-11 71.6 91 51.6
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 4.2e-11 71.2 74 54.1
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 5.5e-11 70.9 88 47.7
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 5.5e-11 70.9 73 54.8
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 7.2e-11 70.5 70 55.7
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 9.5e-11 70.1 91 47.3
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 9.5e-11 70.1 86 50.0
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 1.2e-10 69.7 86 47.7
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 1.6e-10 69.3 79 54.4
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 2.1e-10 68.9 91 48.4
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 2.1e-10 68.9 101 47.5
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 2.1e-10 68.9 73 52.1
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 2.8e-10 68.6 89 44.9
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 3.6e-10 68.2 74 51.4
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.6e-10 68.2 69 52.2
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 4.7e-10 67.8 81 53.1
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 6.1e-10 67.4 74 51.4
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 8.0e-10 67.0 99 44.4
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 8.0e-10 67.0 75 54.7
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 8.0e-10 67.0 69 49.3
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.0e-09 66.6 78 50.0
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 1.0e-09 66.6 88 47.7
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.0e-09 66.6 100 47.0
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.4e-09 66.2 91 41.8
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 2.3e-09 65.5 73 49.3
Sp5g16990 Schrenkiella parvula HOM05D003660 ORTHO05D003415 2.3e-09 65.5 74 52.7
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 5.2e-09 64.3 75 52.0
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 5.2e-09 64.3 69 52.2
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 6.8e-09 63.9 74 50.0
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 6.8e-09 63.9 74 50.0
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 6.8e-09 63.9 74 50.0
BcaB06g28993 Brassica carinata HOM05D002674 ORTHO05D007700 2.0e-08 62.4 44 75.0
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.0e-08 62.4 70 45.7
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 2.0e-08 62.4 70 50.0
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 2.6e-08 62.0 70 48.6
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 4.4e-08 61.2 70 51.4
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 4.4e-08 61.2 78 50.0
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 1.3e-07 59.7 76 43.4
QL01p011704 Quercus lobata HOM05D003660 ORTHO05D003415 2.2e-07 58.9 48 58.3
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 4.9e-07 57.8 119 41.2
unitig_8.g2976 Utricularia gibba HOM05D003660 ORTHO05D003415 4.9e-07 57.8 70 48.6
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 8.3e-07 57.0 70 48.6
TPR.G36105 Trifolium pratense HOM05D003660 ORTHO05D003415 1.1e-06 56.6 53 52.8
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.1e-06 56.6 70 48.6
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.8e-06 55.8 70 41.4
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.8e-06 55.8 79 45.6
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 2.4e-06 55.5 83 45.8
Zm00001eb213520 Zea mays HOM05D026384 ORTHO05D003415 3.1e-06 55.1 51 54.9
Zm00001eb297060 Zea mays HOM05D026384 ORTHO05D004838 3.1e-06 55.1 51 54.9
Zm00001eb303600 Zea mays HOM05D026384 ORTHO05D003415 3.1e-06 55.1 51 54.9
Ca_19453_v3 Cicer arietinum L. HOM05D003660 ORTHO05D003415 9.2e-06 53.5 52 48.1


User provided reference genes

Program Settings