Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1414.1 726 100.0
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 2.4e-293 1011.9 736 77.2
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 4.1e-280 968.0 783 70.6
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 7.9e-268 927.2 785 69.0
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.7e-260 902.1 783 67.4
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 7.7e-255 884.0 735 69.4
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 3.8e-254 881.7 735 69.3
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 1.2e-247 860.1 735 68.0
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 7.0e-240 834.3 777 64.2
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 2.4e-232 809.3 769 63.8
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.1e-221 773.9 790 61.1
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 6.4e-217 758.1 762 62.5
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 1.4e-216 756.9 763 62.4
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 5.6e-213 745.0 763 62.0
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 1.4e-211 740.3 761 61.2
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 1.9e-200 703.4 766 60.4
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 2.1e-196 689.9 765 60.0
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 2.6e-178 629.8 765 54.2
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 2.9e-145 520.0 664 52.4
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 8.8e-142 508.4 654 52.3
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 5.2e-126 456.1 686 47.8
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.8e-123 447.6 933 39.8
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 4.3e-112 409.8 897 40.1
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 3.9e-105 386.7 936 39.4
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 5.0e-105 386.3 955 40.0
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 1.4e-102 378.3 971 37.9
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 3.4e-101 373.6 913 40.2
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 6.4e-100 369.4 943 37.6
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 3.3e-96 357.1 932 37.7
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 6.2e-95 352.8 945 36.9
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 5.2e-94 349.7 954 38.1
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 1.7e-92 344.7 863 37.5
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 9.2e-91 339.0 857 37.8
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-89 335.1 868 37.3
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 1.9e-88 331.3 943 36.7
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 3.3e-88 330.5 943 36.3
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 2.8e-87 327.4 920 36.3
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 2.8e-87 327.4 920 36.3
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 5.8e-85 319.7 848 37.6
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 1.4e-83 315.1 931 35.2
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 4.6e-82 310.1 893 35.8
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 4.6e-82 310.1 843 37.4
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 1.7e-81 308.1 967 35.7
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 5.6e-80 303.1 950 34.5
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 1.2e-79 302.0 790 38.7
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 1.8e-78 298.1 938 34.9
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 4.0e-78 297.0 938 34.5
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 9.3e-75 285.8 183 84.7
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 2.9e-60 237.7 839 30.4
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 6.9e-54 216.5 961 28.6
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 2.6e-53 214.5 208 61.1
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 1.1e-51 209.1 1028 26.5
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 6.7e-49 199.9 729 31.1
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 2.2e-47 194.9 1113 27.0
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 3.7e-47 194.1 1142 26.2
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 3.7e-47 194.1 415 34.7
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 6.3e-47 193.4 446 34.8
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 1.8e-46 191.8 456 34.6
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 5.3e-46 190.3 1039 26.9
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.5e-45 188.7 826 30.0
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 5.9e-45 186.8 454 35.0
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 5.9e-45 186.8 457 35.4
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 7.6e-45 186.4 454 35.0
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 1.3e-44 185.7 453 33.3
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.7e-44 185.3 1066 27.5
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.2e-44 184.9 857 29.6
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 2.9e-44 184.5 1007 26.9
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.9e-44 184.5 417 36.2
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 5.0e-44 183.7 420 35.5
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 5.0e-44 183.7 420 35.5
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 3.2e-43 181.0 458 33.4
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.6e-42 178.7 420 35.5
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 2.1e-42 178.3 1071 26.5
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 6.1e-42 176.8 1025 26.5
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 7.9e-42 176.4 419 35.1
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.0e-41 176.0 442 34.6
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 1.3e-41 175.6 446 32.1
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.3e-41 175.6 1026 26.0
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 3.9e-41 174.1 787 27.6
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 1.1e-40 172.6 950 26.8
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 1.9e-40 171.8 422 33.6
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.9e-40 171.8 570 31.6
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 5.7e-40 170.2 457 33.3
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 7.4e-40 169.9 553 30.2
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 7.4e-40 169.9 443 33.9
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 7.4e-40 169.9 555 32.4
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.3e-39 169.1 567 30.3
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 1.7e-39 168.7 858 26.2
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 2.8e-39 167.9 830 28.7
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 4.8e-39 167.2 437 35.5
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 6.3e-39 166.8 442 34.2
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 2.4e-38 164.9 416 36.3
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 2.4e-38 164.9 465 32.3
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 3.1e-38 164.5 459 32.5
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 5.3e-38 163.7 553 31.3
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 6.9e-38 163.3 346 37.3
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 6.9e-38 163.3 382 35.3
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 9.1e-38 162.9 880 27.5
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 1.5e-37 162.2 413 33.7
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 1.5e-37 162.2 452 32.7
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 2.0e-37 161.8 340 37.1
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 2.0e-37 161.8 340 37.1
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 2.6e-37 161.4 419 34.6
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 4.5e-37 160.6 857 26.6
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 5.9e-37 160.2 553 32.5
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.3e-36 159.1 675 28.6
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.7e-36 158.7 317 36.9
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 2.2e-36 158.3 411 35.5
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 2.2e-36 158.3 372 34.4
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.2e-36 158.3 657 29.1
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 5.0e-36 157.1 339 36.9
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 8.5e-36 156.4 376 34.0
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 1.1e-35 156.0 1089 25.7
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 1.1e-35 156.0 723 28.1
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 3.2e-35 154.5 431 31.3
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 3.2e-35 154.5 391 35.0
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 7.2e-35 153.3 362 35.4
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 1.6e-34 152.1 404 31.7
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 2.7e-34 151.4 403 33.3
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 2.7e-34 151.4 410 32.9
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 1.8e-33 148.7 767 27.5
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 8.8e-33 146.4 585 29.6
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 8.8e-33 146.4 585 29.6
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 8.8e-33 146.4 585 29.6
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.0e-32 145.2 538 30.1
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 3.3e-32 144.4 477 30.8
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 5.7e-32 143.7 400 31.5
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 5.7e-32 143.7 448 30.1
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 7.4e-32 143.3 527 30.4
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 9.7e-32 142.9 376 31.9
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 2.8e-31 141.4 212 42.0
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 2.8e-31 141.4 420 30.7
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 2.8e-31 141.4 389 32.1
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 4.8e-31 140.6 401 31.9
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 4.8e-31 140.6 542 29.0
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 6.3e-31 140.2 468 30.3
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 8.2e-31 139.8 422 31.8
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 8.2e-31 139.8 345 34.2
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 4.1e-30 137.5 390 32.8
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 4.1e-30 137.5 381 33.1
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 5.3e-30 137.1 358 35.8
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 5.3e-30 137.1 741 27.0
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 5.3e-30 137.1 798 28.1
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 6.9e-30 136.7 419 32.2
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 3.4e-29 134.4 369 31.2
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 7.7e-29 133.3 439 30.5
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 7.7e-29 133.3 539 28.6
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 7.7e-29 133.3 362 32.3
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 1.0e-28 132.9 1009 24.7
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 2.9e-28 131.3 395 32.9
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 2.9e-28 131.3 450 29.6
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 3.8e-28 131.0 353 35.1
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 6.5e-28 130.2 414 29.7
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 6.5e-28 130.2 640 27.0
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 1.9e-27 128.6 703 27.2
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 4.7e-26 124.0 366 32.8
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 1.1e-24 119.4 639 27.2
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 3.3e-24 117.9 356 31.7
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 7.0e-22 110.2 766 26.6
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 5.0e-20 104.0 186 40.9
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 9.4e-19 99.8 295 30.8
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 2.0e-13 82.0 264 30.3
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 2.9e-12 78.2 478 27.0
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 3.2e-11 74.7 240 32.1
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 3.2e-11 74.7 222 31.1
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 3.2e-11 74.7 77 49.4
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 1.2e-10 72.8 86 53.5
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 2.7e-10 71.6 223 29.1
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.8e-09 68.9 151 35.8
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 2.3e-09 68.6 206 31.6
TPR.G10391 Trifolium pratense HOM05D011141 ORTHO05D010879 7.5e-08 63.5 216 28.7
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 9.8e-08 63.2 133 33.8
Glyma.20G243300 Glycine max HOM05D011141 ORTHO05D010879 2.2e-07 62.0 288 25.3
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 3.7e-07 61.2 212 26.4
QL06p027780 Quercus lobata HOM05D010496 ORTHO05D010879 6.3e-07 60.5 266 28.6
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 6.3e-07 60.5 252 25.0
Phvul.007G007000 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 4.1e-06 57.8 245 24.5
Duzib151G0883 Durio zibethinus HOM05D010496 ORTHO05D010879 7.0e-06 57.0 191 26.7
Medtr1g116100 Medicago truncatula HOM05D011141 ORTHO05D010879 7.0e-06 57.0 202 26.7
CDE03G0063 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 9.1e-06 56.6 45 55.6
AUR62026200 Chenopodium quinoa HOM05D007934 ORTHO05D010067 9.1e-06 56.6 244 26.2


User provided reference genes

Program Settings