Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22231 Brassica carinata HOM05D000026 ORTHO05D090317 7.4e-42 173.3 80 100.0
Aa31LG3G11730 Aethionema arabicum HOM05D000026 ORTHO05D001292 4.8e-09 64.3 37 75.7
AL8G31390 Arabidopsis lyrata HOM05D000026 ORTHO05D001292 6.3e-09 63.9 37 75.7
AT5G55830 Arabidopsis thaliana HOM05D000026 ORTHO05D001292 6.3e-09 63.9 37 75.7
CARHR269200 Cardamine hirsuta HOM05D000026 ORTHO05D001292 6.3e-09 63.9 37 75.7
Thhalv10012869m.g Eutrema salsugineum HOM05D000026 ORTHO05D001292 6.3e-09 63.9 37 75.7
Sp6g17710 Schrenkiella parvula HOM05D000026 ORTHO05D001292 6.3e-09 63.9 37 75.7
BcaB08g35943 Brassica carinata HOM05D000026 ORTHO05D001292 8.2e-09 63.5 37 73.0
BcaC04g20198 Brassica carinata HOM05D000026 ORTHO05D001292 1.1e-08 63.2 34 76.5
A10p13040 Brassica napus HOM05D000026 ORTHO05D001292 1.1e-08 63.2 34 76.5
C09p46760 Brassica napus HOM05D000026 ORTHO05D001292 1.1e-08 63.2 34 76.5
BolC9t57527H Brassica oleracea HOM05D000026 ORTHO05D001292 1.1e-08 63.2 34 76.5
BraA10t43398Z Brassica rapa HOM05D000026 ORTHO05D001292 1.1e-08 63.2 34 76.5
DCAR_013237 Daucus carota HOM05D000026 ORTHO05D001292 1.4e-08 62.8 37 70.3
THA.LOC104817706 Tarenaya hassleriana HOM05D000026 ORTHO05D001292 1.4e-08 62.8 37 73.0
A02p09500 Brassica napus HOM05D000026 ORTHO05D017167 1.8e-08 62.4 37 75.7
Carub.0008s1618 Capsella rubella HOM05D000026 ORTHO05D001292 1.8e-08 62.4 37 73.0
C02p15800 Brassica napus HOM05D000026 ORTHO05D017167 2.4e-08 62.0 37 73.0
BolC2t07687H Brassica oleracea HOM05D000026 ORTHO05D017167 2.4e-08 62.0 37 73.0
Ciclev10007682m.g Citrus clementina HOM05D000026 ORTHO05D001292 7.0e-08 60.5 37 70.3
GSVIVG01014693001 Vitis vinifera HOM05D000026 ORTHO05D001292 9.1e-08 60.1 37 67.6
MSTRG.14488 Avicennia marina HOM05D000026 ORTHO05D001292 2.0e-07 58.9 37 67.6
Nn1g07521 Nelumbo nucifera HOM05D000026 ORTHO05D001292 2.0e-07 58.9 37 67.6
Atru.chr2.3692 Acer truncatum HOM05D000026 ORTHO05D017167 2.7e-07 58.5 37 67.6
Os06g0285400 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D001292 2.7e-07 58.5 33 78.8
Potri.001G368300 Populus trichocarpa HOM05D000026 ORTHO05D001292 3.5e-07 58.2 37 67.6
CDE10G0133 Ceratophyllum demersum HOM05D000026 ORTHO05D001292 5.9e-07 57.4 37 59.5
Eucgr.F02045 Eucalyptus grandis HOM05D000026 ORTHO05D001292 5.9e-07 57.4 37 67.6
MSTRG.13021 Avicennia marina HOM05D000026 ORTHO05D001292 7.7e-07 57.0 37 62.2
Hma1.2p1_2829F.1_g329170 Hydrangea macrophylla HOM05D000026 ORTHO05D001292 7.7e-07 57.0 37 64.9
Lsat_1_v5_gn_7_115040 Lactuca sativa HOM05D000026 ORTHO05D001292 7.7e-07 57.0 37 62.2
Sabra16G0241400 Salix brachista HOM05D000026 ORTHO05D001292 7.7e-07 57.0 37 64.9
SGA_v2.0_scaffold42G15983 Striga asiatica HOM05D000026 ORTHO05D001292 7.7e-07 57.0 37 62.2
Thecc.07G013100 Theobroma cacao HOM05D000026 ORTHO05D001292 1.0e-06 56.6 37 64.9
TAR626G0329 Trochodendron aralioides HOM05D000026 ORTHO05D001292 1.0e-06 56.6 37 64.9
Aqoxy4G02293 Aquilegia oxysepala HOM05D000026 ORTHO05D001292 1.3e-06 56.2 37 62.2
Lsat_1_v5_gn_9_88680 Lactuca sativa HOM05D000026 ORTHO05D001292 1.3e-06 56.2 37 64.9
ClCG10G004440 Citrullus lanatus HOM05D000026 ORTHO05D001292 1.7e-06 55.8 37 64.9
Gohir.A01G091800 Gossypium hirsutum HOM05D000026 ORTHO05D001292 1.7e-06 55.8 37 62.2
Gorai.002G100600 Gossypium raimondii HOM05D000026 ORTHO05D001292 1.7e-06 55.8 37 62.2
Lj8C179G7 Lonicera japonica HOM05D000026 ORTHO05D001292 1.7e-06 55.8 37 62.2
PGR083G0263 Punica granatum HOM05D000026 ORTHO05D001292 1.7e-06 55.8 37 62.2
Duzib213G1027 Durio zibethinus HOM05D000026 ORTHO05D001292 2.2e-06 55.5 37 62.2
Duzib268G1726 Durio zibethinus HOM05D000026 ORTHO05D001292 2.2e-06 55.5 37 62.2
Gohir.A13G132366 Gossypium hirsutum HOM05D000026 ORTHO05D001292 2.2e-06 55.5 37 59.5
Gohir.D01G062000 Gossypium hirsutum HOM05D000026 ORTHO05D001292 2.2e-06 55.5 37 62.2
Gohir.D13G135800 Gossypium hirsutum HOM05D000026 ORTHO05D001292 2.2e-06 55.5 37 59.5
Gorai.013G152300 Gossypium raimondii HOM05D000026 ORTHO05D001292 2.2e-06 55.5 37 59.5
Manes.15G059400 Manihot esculenta HOM05D000026 ORTHO05D001292 2.2e-06 55.5 37 62.2
CSS0030436 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D001292 2.9e-06 55.1 37 64.9
Cpa.g.sc12.115 Carica papaya HOM05D000026 ORTHO05D001292 2.9e-06 55.1 37 62.2
COL.COLO4_37699 Corchorus olitorius HOM05D000026 ORTHO05D017167 2.9e-06 55.1 37 64.9
Phvul.006G057900 Phaseolus vulgaris HOM05D000026 ORTHO05D001292 2.9e-06 55.1 37 70.3
CiPaw.11G204400 Carya illinoinensis HOM05D000026 ORTHO05D001292 3.8e-06 54.7 37 62.2
ECA240G2228 Erigeron canadensis HOM05D000026 ORTHO05D001292 3.8e-06 54.7 37 64.9
Glyma.18G076200 Glycine max HOM05D000026 ORTHO05D001292 3.8e-06 54.7 37 70.3
Hma1.2p1_1402F.1_g281080 Hydrangea macrophylla HOM05D000026 ORTHO05D001292 3.8e-06 54.7 37 64.9
Psat2g007240 Pisum sativum HOM05D000026 ORTHO05D001292 3.8e-06 54.7 37 70.3
Potri.011G093700 Populus trichocarpa HOM05D000026 ORTHO05D001292 3.8e-06 54.7 37 62.2
VMungo0540G1419 Vigna mungo HOM05D000026 ORTHO05D001292 3.8e-06 54.7 37 70.3
arahy.Tifrunner.gnm1.ann1.W6VWGY Arachis hypogaea HOM05D000026 ORTHO05D001292 5.0e-06 54.3 37 67.6
arahy.Tifrunner.gnm1.ann1.YN37NC Arachis hypogaea HOM05D000026 ORTHO05D001292 5.0e-06 54.3 37 67.6
QL08p004008 Quercus lobata HOM05D000026 ORTHO05D001292 5.0e-06 54.3 37 59.5
CANSAT11G0414 Cannabis sativa HOM05D000026 ORTHO05D001292 6.5e-06 53.9 37 59.5
MELO3C014117.2 Cucumis melo HOM05D000026 ORTHO05D001292 6.5e-06 53.9 37 62.2
CsaV3_3G004230 Cucumis sativus L. HOM05D000026 ORTHO05D001292 6.5e-06 53.9 37 62.2
MD03G1026600 Malus domestica HOM05D000026 ORTHO05D001292 6.5e-06 53.9 37 59.5
SHI26510 Sapria himalayana HOM05D000026 ORTHO05D001292 6.5e-06 53.9 37 59.5
Sed0012973 Sechium edule HOM05D000026 ORTHO05D001292 6.5e-06 53.9 33 66.7
Ah.04g166600 Amaranthus hybridus HOM05D000026 ORTHO05D001292 8.5e-06 53.5 37 62.2
Ca_06398_v3 Cicer arietinum L. HOM05D000026 ORTHO05D001292 8.5e-06 53.5 37 70.3
Cc05_g14970 Coffea canephora HOM05D000026 ORTHO05D001292 8.5e-06 53.5 37 56.8
HanXRQChr11g0333331 Helianthus annuus HOM05D000026 ORTHO05D001292 8.5e-06 53.5 37 59.5
Sabra11G0088200 Salix brachista HOM05D000026 ORTHO05D001292 8.5e-06 53.5 37 62.2
TPR.G8613 Trifolium pratense HOM05D000026 ORTHO05D001292 8.5e-06 53.5 37 70.3


User provided reference genes

Program Settings