Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22210 Brassica carinata HOM05D000067 ORTHO05D000097 1.1e-37 159.5 81 100.0
C02p16080 Brassica napus HOM05D000067 ORTHO05D000097 7.5e-18 93.6 53 88.7
CARHR033140 Cardamine hirsuta HOM05D000067 ORTHO05D000097 1.4e-16 89.4 53 79.2
CARHR033160 Cardamine hirsuta HOM05D000067 ORTHO05D000097 2.4e-16 88.6 53 81.1
AL1G48150 Arabidopsis lyrata HOM05D000067 ORTHO05D000097 1.2e-15 86.3 51 80.4
AT1G33750 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 7.8e-15 83.6 53 75.5
BcaB04g18850 Brassica carinata HOM05D000067 ORTHO05D000097 1.9e-13 79.0 53 67.9
Carub.0003s1421 Capsella rubella HOM05D000067 ORTHO05D000097 3.3e-13 78.2 53 67.9
AT3G29410 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 7.3e-13 77.0 53 69.8
AT3G14490 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 1.6e-12 75.9 53 67.9
C03p47080 Brassica napus HOM05D000067 ORTHO05D000097 1.6e-12 75.9 53 66.0
BcaC01g03927 Brassica carinata HOM05D000067 ORTHO05D000097 2.1e-12 75.5 53 69.8
A03p38860 Brassica napus HOM05D000067 ORTHO05D000097 2.1e-12 75.5 53 71.7
C03p47050 Brassica napus HOM05D000067 ORTHO05D000097 2.1e-12 75.5 53 71.7
BolC3t16970H Brassica oleracea HOM05D000067 ORTHO05D000097 2.1e-12 75.5 53 69.8
BraA03t13034Z Brassica rapa HOM05D000067 ORTHO05D000097 2.1e-12 75.5 53 71.7
A03p38870 Brassica napus HOM05D000067 ORTHO05D000097 2.8e-12 75.1 53 64.2
BraA03t13036Z Brassica rapa HOM05D000067 ORTHO05D000097 2.8e-12 75.1 53 64.2
BcaB04g18851 Brassica carinata HOM05D000067 ORTHO05D000097 4.7e-12 74.3 53 66.0
CARHR203560 Cardamine hirsuta HOM05D000067 ORTHO05D000097 4.7e-12 74.3 76 52.6
AL3G26870 Arabidopsis lyrata HOM05D000067 ORTHO05D000097 8.1e-12 73.6 51 66.7
BcaC09g48425 Brassica carinata HOM05D000067 ORTHO05D000097 1.1e-11 73.2 53 67.9
A01p39220 Brassica napus HOM05D000067 ORTHO05D000097 1.1e-11 73.2 53 67.9
C01p49890 Brassica napus HOM05D000067 ORTHO05D000097 1.1e-11 73.2 53 67.9
BolC1t04946H Brassica oleracea HOM05D000067 ORTHO05D000097 1.1e-11 73.2 53 67.9
BraA01t03965Z Brassica rapa HOM05D000067 ORTHO05D000097 1.1e-11 73.2 53 67.9
CARHR089280 Cardamine hirsuta HOM05D000067 ORTHO05D000097 1.4e-11 72.8 53 64.2
BcaC01g03925 Brassica carinata HOM05D000067 ORTHO05D000097 1.8e-11 72.4 53 64.2
Sp3g12810 Schrenkiella parvula HOM05D000067 ORTHO05D000097 3.1e-11 71.6 51 64.7
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 5.2e-11 70.9 53 66.0
AT3G32030 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 8.9e-11 70.1 53 64.2
Carub.0003s2395 Capsella rubella HOM05D000067 ORTHO05D000097 2.6e-10 68.6 53 62.3
Aa31LG8G1750 Aethionema arabicum HOM05D000067 ORTHO05D000097 3.4e-10 68.2 77 50.6
CARHR089270 Cardamine hirsuta HOM05D000067 ORTHO05D000097 3.4e-10 68.2 54 59.3
CARHR275230 Cardamine hirsuta HOM05D000067 ORTHO05D000097 5.8e-10 67.4 54 59.3
Thhalv10015429m.g Eutrema salsugineum HOM05D000067 ORTHO05D000097 5.8e-10 67.4 46 71.7
Sp3g12790 Schrenkiella parvula HOM05D000067 ORTHO05D000097 5.8e-10 67.4 51 60.8
A01p39250 Brassica napus HOM05D000067 ORTHO05D000097 7.5e-10 67.0 51 66.7
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 7.5e-10 67.0 54 59.3
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 7.5e-10 67.0 54 59.3
BraA01t03968Z Brassica rapa HOM05D000067 ORTHO05D000097 7.5e-10 67.0 51 66.7
BraA03t13830Z Brassica rapa HOM05D000067 ORTHO05D000097 7.5e-10 67.0 54 59.3
A01p39200 Brassica napus HOM05D000067 ORTHO05D000097 1.3e-09 66.2 53 60.4
BraA01t03964Z Brassica rapa HOM05D000067 ORTHO05D000097 1.3e-09 66.2 53 60.4
BcaC04g23447 Brassica carinata HOM05D000067 ORTHO05D000097 1.7e-09 65.9 54 55.6
C09p08240 Brassica napus HOM05D000067 ORTHO05D000097 1.7e-09 65.9 54 55.6
BolC9t53734H Brassica oleracea HOM05D000067 ORTHO05D000097 1.7e-09 65.9 54 55.6
Thhalv10005627m.g Eutrema salsugineum HOM05D000067 ORTHO05D000097 1.7e-09 65.9 54 55.6
Sp3g12800 Schrenkiella parvula HOM05D000067 ORTHO05D000097 2.2e-09 65.5 52 61.5
AL7G46440 Arabidopsis lyrata HOM05D000067 ORTHO05D000097 4.9e-09 64.3 53 60.4
CARHR089260 Cardamine hirsuta HOM05D000067 ORTHO05D000097 6.4e-09 63.9 52 61.5
BraA09t36385Z Brassica rapa HOM05D000067 ORTHO05D000097 1.1e-08 63.2 54 55.6
Carub.0003s1423 Capsella rubella HOM05D000067 ORTHO05D000097 5.4e-08 60.8 54 55.6
BcaC05g29063 Brassica carinata HOM05D000067 ORTHO05D000097 9.2e-08 60.1 54 59.3
C05p52750 Brassica napus HOM05D000067 ORTHO05D000097 9.2e-08 60.1 54 59.3
Carub.0001s3324 Capsella rubella HOM05D000067 ORTHO05D000097 1.2e-07 59.7 44 56.8
Aa31LG10G11660 Aethionema arabicum HOM05D000067 ORTHO05D000097 2.1e-07 58.9 52 55.8
AT3G14520 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 2.7e-07 58.5 54 55.6
CARHR227040 Cardamine hirsuta HOM05D000067 ORTHO05D000097 3.5e-07 58.2 51 60.8
BolC5t33953H Brassica oleracea HOM05D000067 ORTHO05D000097 7.8e-07 57.0 54 55.6
BcaB03g11635 Brassica carinata HOM05D000067 ORTHO05D000097 1.0e-06 56.6 57 49.1
BcaB03g11636 Brassica carinata HOM05D000067 ORTHO05D000097 1.0e-06 56.6 57 49.1
A08p14720 Brassica napus HOM05D000067 ORTHO05D000097 1.0e-06 56.6 53 54.7
C03p82520 Brassica napus HOM05D000067 ORTHO05D000097 1.0e-06 56.6 58 46.6
BolC3t20502H Brassica oleracea HOM05D000067 ORTHO05D000097 1.0e-06 56.6 58 46.6
BraA08t33458Z Brassica rapa HOM05D000067 ORTHO05D000097 1.0e-06 56.6 53 54.7
Carub.0006s2747 Capsella rubella HOM05D000067 ORTHO05D000097 1.0e-06 56.6 54 51.9
Aa31LG7G11160 Aethionema arabicum HOM05D000067 ORTHO05D000097 1.3e-06 56.2 53 50.9
AT3G14540 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 1.3e-06 56.2 54 53.7
AT1G31950 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 1.7e-06 55.8 54 53.7
CARHR227060 Cardamine hirsuta HOM05D000067 ORTHO05D000097 1.7e-06 55.8 45 62.2
THA.LOC104811351 Tarenaya hassleriana HOM05D000067 ORTHO05D000097 1.7e-06 55.8 53 54.7
THA.LOC104822556 Tarenaya hassleriana HOM05D000067 ORTHO05D000097 1.7e-06 55.8 53 54.7
THA.LOC104822557 Tarenaya hassleriana HOM05D000067 ORTHO05D000097 2.3e-06 55.5 53 54.7
A08p14460 Brassica napus HOM05D000067 ORTHO05D000097 3.0e-06 55.1 58 48.3
BraA08t33435Z Brassica rapa HOM05D000067 ORTHO05D000097 3.0e-06 55.1 58 48.3
BcaB03g11634 Brassica carinata HOM05D000067 ORTHO05D000097 3.9e-06 54.7 57 47.4
CARHR227030 Cardamine hirsuta HOM05D000067 ORTHO05D000097 3.9e-06 54.7 49 57.1
AT4G20200 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 5.1e-06 54.3 50 58.0
C07p50810 Brassica napus HOM05D000067 ORTHO05D000097 5.1e-06 54.3 53 54.7
AT3G29110 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 6.6e-06 53.9 56 48.2
Carub.0007s2094 Capsella rubella HOM05D000067 ORTHO05D000097 6.6e-06 53.9 53 50.9
Carub.0008s0370 Capsella rubella HOM05D000067 ORTHO05D000097 6.6e-06 53.9 53 50.9
Thhalv10027515m.g Eutrema salsugineum HOM05D000067 ORTHO05D000097 6.6e-06 53.9 51 54.9
BcaNung03493 Brassica carinata HOM05D000067 ORTHO05D000097 8.6e-06 53.5 47 57.4
BcaNung03495 Brassica carinata HOM05D000067 ORTHO05D000097 8.6e-06 53.5 47 57.4
C07p50770 Brassica napus HOM05D000067 ORTHO05D000097 8.6e-06 53.5 47 57.4
BolC7t45578H Brassica oleracea HOM05D000067 ORTHO05D000097 8.6e-06 53.5 47 57.4
CARHR220940 Cardamine hirsuta HOM05D000067 ORTHO05D013969 8.6e-06 53.5 74 36.5


User provided reference genes

Program Settings