Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 5.6e-130 467.6 236 100.0
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 9.9e-127 456.8 236 96.6
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 9.9e-127 456.8 236 96.6
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 2.2e-126 455.7 236 96.6
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 2.2e-126 455.7 236 96.6
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 2.2e-126 455.7 236 96.6
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 4.8e-105 384.8 231 84.4
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.0e-91 340.5 223 74.4
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 5.1e-91 338.2 223 72.6
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.1e-90 337.0 243 68.7
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 4.3e-90 335.1 237 74.3
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 4.8e-89 331.6 220 72.7
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.4e-88 330.1 237 69.6
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 1.2e-87 327.0 233 70.4
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 2.0e-87 326.2 233 67.8
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 1.7e-86 323.2 220 71.4
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 1.7e-86 323.2 220 71.4
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 2.2e-86 322.8 218 72.0
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 2.2e-86 322.8 218 72.0
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.9e-86 322.4 218 72.0
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 5.0e-86 321.6 220 70.9
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 6.5e-86 321.2 237 67.5
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.1e-85 320.5 235 67.2
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 1.4e-85 320.1 236 66.9
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 9.3e-85 317.4 231 68.0
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 9.3e-85 317.4 231 68.0
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 1.2e-84 317.0 231 68.0
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 2.1e-84 316.2 235 66.8
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 2.1e-84 316.2 235 66.8
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 3.5e-84 315.5 223 67.3
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 1.0e-83 313.9 241 67.6
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 1.8e-83 313.2 216 71.3
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 8.7e-83 310.8 221 70.6
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 1.1e-82 310.5 222 70.3
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 1.1e-82 310.5 222 70.3
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 3.3e-82 308.9 218 69.3
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 4.3e-82 308.5 219 67.1
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 5.7e-82 308.1 218 69.7
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 7.4e-82 307.8 216 69.4
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 9.7e-82 307.4 216 68.5
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 1.3e-81 307.0 221 69.7
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.3e-81 307.0 214 70.6
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 1.6e-81 306.6 221 69.7
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.6e-81 306.6 214 69.6
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 1.6e-81 306.6 218 66.5
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 1.6e-81 306.6 215 69.8
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 4.8e-81 305.1 219 66.7
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 4.8e-81 305.1 214 69.6
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 4.8e-81 305.1 214 69.6
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 6.3e-81 304.7 219 67.1
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 6.3e-81 304.7 235 67.2
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 8.2e-81 304.3 215 68.8
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 1.1e-80 303.9 214 67.3
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 1.4e-80 303.5 217 65.9
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 2.4e-80 302.8 223 67.3
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 3.1e-80 302.4 216 67.1
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 1.2e-79 300.4 212 68.4
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 1.2e-79 300.4 217 66.8
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 1.5e-79 300.1 220 65.0
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 2.0e-79 299.7 216 65.7
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 2.0e-79 299.7 218 67.0
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 2.0e-79 299.7 216 67.1
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 2.6e-79 299.3 216 66.2
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 3.4e-79 298.9 213 68.1
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 4.5e-79 298.5 216 67.6
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 5.9e-79 298.1 216 67.6
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 7.7e-79 297.7 217 67.7
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 1.0e-78 297.4 212 67.9
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 1.0e-78 297.4 219 66.7
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.0e-78 297.4 208 68.3
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 1.0e-78 297.4 213 67.6
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.3e-78 297.0 223 64.6
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 1.7e-78 296.6 226 65.0
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.7e-78 296.6 215 67.4
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 2.2e-78 296.2 215 67.0
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 6.5e-78 294.7 215 67.4
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 6.5e-78 294.7 222 66.7
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.1e-77 293.9 238 63.9
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 1.4e-77 293.5 214 65.9
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 1.9e-77 293.1 210 67.1
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 3.2e-77 292.4 218 65.1
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.2e-77 292.4 222 66.2
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 9.4e-77 290.8 215 66.0
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 1.6e-76 290.0 222 64.4
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 7.9e-76 287.7 219 64.8
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 7.9e-76 287.7 219 64.8
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 1.4e-75 287.0 223 65.0
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 3.9e-75 285.4 217 63.6
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 8.8e-75 284.3 218 63.3
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 8.8e-75 284.3 222 63.5
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.1e-74 283.9 227 61.2
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.1e-74 283.9 218 67.0
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.1e-74 283.9 216 62.5
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.0e-74 283.1 218 67.4
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 9.7e-74 280.8 218 66.5
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.7e-73 280.0 214 63.6
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 2.2e-73 279.6 212 63.2
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 2.2e-73 279.6 224 62.1
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 8.2e-73 277.7 220 61.4
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 8.2e-73 277.7 212 65.1
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.1e-72 277.3 224 61.6
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.4e-72 276.9 213 64.3
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.4e-72 276.9 224 61.2
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 1.8e-72 276.6 222 60.4
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 4.1e-72 275.4 212 61.8
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 1.2e-71 273.9 207 64.3
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 2.0e-71 273.1 211 63.0
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 1.0e-70 270.8 218 61.0
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 1.0e-70 270.8 213 61.5
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.3e-70 270.4 216 62.0
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 1.3e-70 270.4 213 62.4
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 2.2e-70 269.6 232 58.2
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.2e-70 269.6 219 60.3
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.9e-70 269.2 219 59.8
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 5.0e-70 268.5 221 61.1
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 6.5e-70 268.1 226 58.8
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 1.4e-69 266.9 226 58.4
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.4e-69 266.9 220 60.5
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.4e-69 266.9 226 58.8
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 1.4e-69 266.9 226 58.8
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 3.2e-69 265.8 212 60.4
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 3.2e-69 265.8 214 62.1
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 5.5e-69 265.0 227 58.6
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 9.4e-69 264.2 212 60.8
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.6e-68 263.5 227 56.4
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 3.6e-68 262.3 217 59.0
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 3.6e-68 262.3 219 58.9
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 7.9e-68 261.2 210 60.0
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 7.9e-68 261.2 212 59.4
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 7.9e-68 261.2 207 61.8
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 1.0e-67 260.8 228 57.9
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 5.1e-67 258.5 223 62.8
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 2.0e-66 256.5 212 61.8
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 4.4e-66 255.4 209 61.2
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 5.7e-66 255.0 213 57.7
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 1.7e-65 253.4 212 58.5
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 1.7e-65 253.4 213 57.7
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 2.2e-65 253.1 175 68.6
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 2.8e-65 252.7 202 62.9
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 8.5e-62 241.1 215 56.7
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.5e-61 240.4 177 65.5
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 4.7e-60 235.3 169 67.5
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 4.4e-58 228.8 216 55.6
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 5.7e-58 228.4 225 54.2
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 7.2e-53 211.5 230 51.7
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 4.7e-52 208.8 206 51.0
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.0e-50 203.4 269 46.5
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 4.4e-50 202.2 231 48.9
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 3.1e-48 196.1 133 71.4
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 7.0e-48 194.9 133 71.4
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 2.0e-47 193.4 133 70.7
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 2.2e-46 189.9 212 48.6
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 6.5e-46 188.3 212 45.8
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 2.4e-40 169.9 212 43.9
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.6e-39 167.2 178 44.9
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.0e-30 137.9 110 59.1
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 1.5e-29 134.0 177 46.9
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.3e-22 110.2 76 75.0
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 5.6e-21 105.5 80 58.8
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 2.1e-12 77.0 89 44.9
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.6e-12 76.3 65 49.2
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 4.0e-11 72.8 76 60.5
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 5.8e-10 68.9 84 45.2
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 6.6e-06 55.5 63 42.9


User provided reference genes

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