Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 7.9e-297 1023.1 538 100.0
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 2.7e-273 944.9 562 90.4
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 1.1e-269 932.9 550 90.2
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 9.1e-269 929.9 554 91.0
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 9.1e-269 929.9 551 89.8
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 1.3e-262 909.4 527 92.2
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 7.0e-261 903.7 523 92.5
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 9.7e-255 883.2 548 84.9
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 4.8e-254 880.9 553 84.6
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 4.2e-250 867.8 549 86.7
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 2.7e-249 865.1 554 84.3
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 1.4e-248 862.8 546 84.8
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 8.8e-240 833.6 550 81.1
BcaC03g14252 Brassica carinata HOM05D006019 ORTHO05D007900 5.6e-210 734.6 458 86.9
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 1.2e-209 733.4 553 70.3
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 1.6e-193 679.9 548 63.9
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 1.4e-192 676.8 478 69.0
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 6.9e-192 674.5 547 63.6
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 1.5e-191 673.3 544 63.4
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 2.6e-191 672.5 574 61.5
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 2.6e-191 672.5 475 69.1
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 3.4e-191 672.2 543 62.8
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 1.3e-190 670.2 478 69.5
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 1.7e-190 669.8 549 63.2
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 2.2e-190 669.5 461 71.8
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 2.9e-190 669.1 470 71.5
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 6.4e-190 667.9 549 63.2
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 8.4e-190 667.5 547 64.0
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 8.4e-190 667.5 470 68.9
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 1.1e-189 667.2 549 63.2
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 4.2e-189 665.2 478 68.4
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 1.2e-188 663.7 549 61.9
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 4.6e-188 661.8 479 68.7
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 1.0e-187 660.6 481 68.2
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 5.1e-187 658.3 459 70.4
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 6.6e-187 657.9 548 61.9
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 6.6e-187 657.9 525 64.2
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 8.7e-187 657.5 479 68.1
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 1.5e-186 656.8 479 68.3
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 3.6e-185 652.1 477 68.3
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 4.8e-185 651.7 541 62.8
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 4.8e-185 651.7 477 68.3
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 8.1e-185 651.0 533 61.9
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 1.1e-184 650.6 549 60.7
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 1.4e-184 650.2 487 66.7
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 2.4e-184 649.4 471 68.8
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 3.1e-184 649.0 477 67.3
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 4.0e-184 648.7 538 61.0
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 9.0e-184 647.5 477 67.9
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 1.2e-183 647.1 486 66.3
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 4.5e-183 645.2 460 69.3
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 5.8e-183 644.8 474 66.2
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 5.8e-183 644.8 460 69.3
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 2.9e-182 642.5 470 68.3
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 3.8e-182 642.1 460 68.9
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 8.4e-182 641.0 467 67.2
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 1.9e-181 639.8 466 67.0
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 4.2e-181 638.6 474 65.2
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 4.2e-181 638.6 478 66.9
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 5.4e-181 638.3 470 66.6
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 5.4e-181 638.3 475 67.8
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 1.2e-180 637.1 470 68.3
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 3.5e-180 635.6 476 66.2
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 6.0e-180 634.8 478 66.3
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 1.8e-179 633.3 475 66.7
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 3.0e-179 632.5 476 66.6
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 3.9e-179 632.1 476 66.0
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 1.9e-178 629.8 461 68.3
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 2.5e-178 629.4 463 67.4
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 3.3e-178 629.0 541 61.7
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 4.3e-178 628.6 473 66.0
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 2.8e-177 625.9 471 66.9
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 2.4e-176 622.9 475 63.6
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 2.4e-176 622.9 443 68.8
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 1.3e-174 617.1 439 69.9
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 2.2e-174 616.3 539 59.7
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 4.2e-173 612.1 478 63.4
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 5.5e-173 611.7 516 62.0
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 1.0e-171 607.4 475 64.4
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 1.3e-171 607.1 540 59.4
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 1.5e-170 603.6 469 64.2
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 1.9e-170 603.2 504 59.1
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 5.7e-170 601.7 470 63.0
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 3.7e-169 599.0 544 58.5
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 1.2e-167 594.0 462 63.2
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 1.3e-166 590.5 462 62.8
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 3.2e-165 585.9 459 64.5
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 5.7e-162 575.1 541 57.9
AUR62015881 Chenopodium quinoa HOM05D006019 ORTHO05D007900 1.6e-161 573.5 487 58.3
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 6.3e-161 571.6 443 63.0
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 1.2e-159 567.4 486 61.5
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 1.1e-157 560.8 540 53.5
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 9.4e-157 557.8 476 60.7
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 1.2e-151 540.8 533 53.3
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 7.7e-151 538.1 453 57.4
SGA_v2.0_scaffold171G38908 Striga asiatica HOM05D006019 ORTHO05D007900 1.1e-138 497.7 489 53.8
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 2.8e-137 493.0 373 66.0
Sc16g0005740 Simmondsia chinensis HOM05D006019 ORTHO05D007900 1.9e-133 480.3 404 59.7
SalBow8G4839 Salvia bowleyana HOM05D006019 ORTHO05D007900 8.3e-129 464.9 470 53.0
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 3.5e-127 459.5 473 47.8
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 1.5e-125 454.1 479 47.8
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 3.2e-125 453.0 481 48.0
CDE04G0522 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 1.1e-120 438.0 373 57.6
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 5.9e-119 432.2 452 47.1
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 7.7e-119 431.8 470 46.4
FAN11G0939 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.0e-115 421.4 376 57.7
CBR_g21850 Chara braunii HOM05D006019 ORTHO05D007900 4.9e-113 412.5 477 45.9
SMO361G0007 Selaginella moellendorffii HOM05D006019 ORTHO05D007900 1.0e-107 394.8 439 43.5
FAN25G3210 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.4e-99 367.9 305 61.6
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 4.0e-75 286.6 385 50.9
MCO13G367 Micromonas commoda HOM05D006019 ORTHO05D007900 4.6e-71 273.1 488 33.2
PRCOL_00002693 Prasinoderma coloniale HOM05D006019 ORTHO05D007900 3.5e-63 246.9 424 34.2
VMungo0464G1494 Vigna mungo HOM05D006019 ORTHO05D007900 9.7e-45 185.7 151 60.3
Glyma.14G020800 Glycine max HOM05D006019 ORTHO05D007900 2.2e-41 174.5 137 57.7
Oeu026380.1 Olea europaea HOM05D006019 ORTHO05D007900 5.0e-41 173.3 148 57.4
BolC9t57451H Brassica oleracea HOM05D006019 ORTHO05D007900 1.6e-39 168.3 195 53.3
TAR720G0004 Trochodendron aralioides HOM05D006019 ORTHO05D007900 6.7e-38 162.9 107 76.6
C09p45770 Brassica napus HOM05D006019 ORTHO05D007900 4.3e-37 160.2 220 48.2
BraA10t43342Z Brassica rapa HOM05D006019 ORTHO05D007900 1.1e-35 155.6 208 46.6
Cre01.g001750 Chlamydomonas reinhardtii HOM05D006019 ORTHO05D007900 4.1e-35 153.7 497 25.8
HPP92_015779 Vanilla planifolia HOM05D006019 ORTHO05D007900 6.1e-31 139.8 211 37.4
C09p45760 Brassica napus HOM05D006019 ORTHO05D007900 1.3e-25 122.1 120 63.3
CDE04G2936 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 2.1e-23 114.8 68 82.4
Hma1.2p1_4091F.1_g338270 Hydrangea macrophylla HOM05D006019 ORTHO05D007900 2.7e-23 114.4 114 59.6
Glyma.14G020666 Glycine max HOM05D006019 ORTHO05D007900 5.2e-22 110.2 92 53.3
BcaC04g20257 Brassica carinata HOM05D006019 ORTHO05D007900 6.3e-20 103.2 81 74.1
VMungo0647G0792 Vigna mungo HOM05D006019 ORTHO05D007900 1.8e-19 101.7 109 49.5
BraA02t07229Z Brassica rapa HOM05D011432 ORTHO05D014939 4.4e-13 80.5 40 100.0
Ca_29171_v3 Cicer arietinum L. HOM05D006019 ORTHO05D003051 5.4e-11 73.6 430 23.3
BolC9t57452H Brassica oleracea HOM05D006019 ORTHO05D000049 2.2e-09 68.2 50 72.0
unitig_22.g6169 Utricularia gibba HOM05D006019 ORTHO05D007900 5.0e-09 67.0 67 52.2


User provided reference genes

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