Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 4.0e-193 677.9 350 100.0
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 1.8e-164 582.8 356 87.1
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 2.8e-162 575.5 350 86.6
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 1.0e-159 567.0 356 86.0
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 1.0e-159 567.0 356 86.0
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 2.2e-146 522.7 390 74.9
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 1.1e-142 510.4 393 74.0
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 1.8e-140 503.1 390 73.3
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 1.0e-135 487.3 393 70.7
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 2.5e-134 482.6 397 69.0
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 2.6e-115 419.5 397 59.4
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 1.0e-95 354.4 415 52.8
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 2.1e-85 320.1 256 69.9
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 1.0e-79 301.2 149 100.0
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 4.3e-78 295.8 361 50.4
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 4.3e-78 295.8 327 52.0
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 5.6e-78 295.4 364 51.4
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 2.8e-77 293.1 380 46.8
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 6.9e-76 288.5 354 46.9
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 9.0e-76 288.1 327 50.2
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 3.8e-74 282.7 357 46.8
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 1.1e-73 281.2 441 42.6
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 1.4e-73 280.8 357 46.5
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 1.4e-73 280.8 340 47.6
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 1.9e-73 280.4 404 44.1
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.9e-73 280.4 357 45.9
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 5.5e-73 278.9 313 51.8
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 3.5e-72 276.2 382 44.2
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 4.6e-72 275.8 411 44.0
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 1.3e-71 274.2 379 46.4
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 5.1e-71 272.3 423 41.8
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 1.1e-70 271.2 321 47.7
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 1.5e-70 270.8 331 47.4
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 1.9e-70 270.4 394 43.1
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 2.5e-70 270.0 332 47.3
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.6e-70 268.9 373 44.2
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 5.6e-70 268.9 322 47.8
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 7.4e-70 268.5 322 47.8
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 7.4e-70 268.5 391 44.5
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 3.7e-69 266.2 315 50.8
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 3.7e-69 266.2 323 49.8
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 4.8e-69 265.8 416 42.3
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 4.8e-69 265.8 460 39.3
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 1.1e-68 264.6 428 41.1
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.8e-68 263.8 352 46.9
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 1.8e-68 263.8 355 43.4
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 1.8e-68 263.8 322 50.0
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 5.3e-68 262.3 335 45.7
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 9.0e-68 261.5 332 48.8
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 1.2e-67 261.2 345 44.9
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 2.0e-67 260.4 334 46.1
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 2.0e-67 260.4 366 45.6
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 3.4e-67 259.6 325 47.7
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 3.4e-67 259.6 411 41.4
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 1.0e-66 258.1 329 47.7
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 1.3e-66 257.7 454 38.3
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 1.3e-66 257.7 314 46.5
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 2.2e-66 256.9 371 43.7
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 2.9e-66 256.5 378 45.2
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 3.8e-66 256.1 425 40.2
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 4.9e-66 255.8 431 39.4
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 6.5e-66 255.4 418 41.9
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 8.4e-66 255.0 322 46.9
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 8.4e-66 255.0 450 39.1
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.4e-65 254.2 332 46.7
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 3.2e-65 253.1 312 47.8
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 4.2e-65 252.7 321 47.7
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 5.5e-65 252.3 387 44.4
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.2e-64 251.1 417 40.3
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 1.2e-64 251.1 507 36.9
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 2.1e-64 250.4 337 45.1
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 3.5e-64 249.6 426 39.2
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 6.0e-64 248.8 453 39.7
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 7.9e-64 248.4 432 38.4
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 1.0e-63 248.1 321 45.2
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 1.0e-63 248.1 453 38.6
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.8e-63 247.3 387 44.7
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 1.8e-63 247.3 439 39.4
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 5.7e-62 242.3 377 42.2
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 2.8e-61 240.0 417 39.3
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 8.2e-61 238.4 320 47.2
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 1.7e-58 230.7 417 38.1
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 2.9e-58 229.9 336 42.3
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 2.9e-58 229.9 361 39.6
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 8.5e-58 228.4 361 39.3
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.5e-57 225.7 327 43.4
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.6e-56 224.2 315 45.1
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 7.9e-56 221.9 319 44.5
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 3.0e-55 219.9 437 34.3
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 4.8e-53 212.6 334 43.1
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 6.7e-47 192.2 199 53.3
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 2.6e-46 190.3 477 31.0
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 5.7e-46 189.1 376 35.9
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.3e-45 185.7 346 37.9
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 1.1e-44 184.9 182 56.0
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 1.1e-44 184.9 488 30.5
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 2.4e-44 183.7 239 45.6
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.5e-43 181.0 296 41.2
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 5.9e-43 179.1 318 38.4
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.8e-42 176.4 305 39.3
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.9e-41 174.1 163 56.4
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 3.6e-40 169.9 163 55.8
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 1.5e-38 164.5 156 53.2
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 4.4e-38 162.9 325 36.3
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 4.1e-36 156.4 186 46.8
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 2.9e-34 150.2 264 36.7
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 2.5e-33 147.1 299 34.4
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 1.7e-29 134.4 238 38.7
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 3.1e-28 130.2 339 29.8
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.2e-27 128.3 109 56.0
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 1.8e-23 114.4 78 71.8
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 4.0e-23 113.2 301 31.2
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 3.1e-20 103.6 87 56.3
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 2.0e-19 100.9 117 47.9
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 3.8e-18 96.7 122 46.7
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 3.8e-18 96.7 161 42.9
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 3.6e-16 90.1 99 49.5
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 4.7e-16 89.7 128 42.2
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 8.3e-13 79.0 51 72.5
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 1.3e-10 71.6 54 59.3
C03p63130 Brassica napus HOM05D003079 ORTHO05D003461 8.9e-07 58.9 54 59.3
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 3.4e-06 57.0 132 27.3


User provided reference genes

Program Settings