Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 2.1e-70 268.9 128 100.0
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 2.0e-49 199.1 102 94.1
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 4.2e-47 191.4 101 90.1
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 4.2e-47 191.4 101 90.1
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 4.2e-47 191.4 101 90.1
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 4.2e-47 191.4 101 90.1
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 9.3e-47 190.3 101 89.1
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 9.3e-47 190.3 101 89.1
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 1.2e-46 189.9 101 88.1
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 1.2e-46 189.9 101 88.1
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 1.6e-46 189.5 101 89.1
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 2.1e-46 189.1 101 88.1
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 4.6e-46 188.0 101 88.1
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 7.9e-46 187.2 101 88.1
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.8e-45 186.0 101 86.1
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 3.9e-45 184.9 101 84.2
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 3.9e-45 184.9 101 84.2
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 6.7e-45 184.1 101 85.1
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 8.7e-45 183.7 101 85.1
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 1.5e-44 183.0 101 84.2
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 1.5e-44 183.0 101 84.2
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 1.9e-44 182.6 101 83.2
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 1.9e-44 182.6 101 83.2
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 1.9e-44 182.6 101 83.2
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 1.9e-44 182.6 101 83.2
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 1.9e-44 182.6 101 83.2
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 2.5e-44 182.2 101 84.2
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 2.5e-44 182.2 101 82.2
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 2.5e-44 182.2 101 82.2
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 2.5e-44 182.2 101 83.2
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 3.3e-44 181.8 101 83.2
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 3.3e-44 181.8 101 83.2
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 3.3e-44 181.8 101 83.2
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 4.3e-44 181.4 101 83.2
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 4.3e-44 181.4 101 82.2
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 5.7e-44 181.0 101 82.2
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 7.4e-44 180.6 101 82.2
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 7.4e-44 180.6 101 82.2
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 7.4e-44 180.6 101 82.2
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 7.4e-44 180.6 101 83.2
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 7.4e-44 180.6 101 83.2
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 7.4e-44 180.6 101 81.2
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 9.7e-44 180.3 101 83.2
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 9.7e-44 180.3 101 81.2
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 1.3e-43 179.9 101 82.2
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 1.3e-43 179.9 101 83.2
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 1.3e-43 179.9 101 82.2
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 1.3e-43 179.9 101 82.2
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 1.3e-43 179.9 101 83.2
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 1.3e-43 179.9 101 83.2
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 1.3e-43 179.9 101 83.2
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 1.6e-43 179.5 101 84.2
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 1.6e-43 179.5 101 83.2
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 1.6e-43 179.5 101 82.2
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 1.6e-43 179.5 101 81.2
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 2.2e-43 179.1 101 81.2
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 2.2e-43 179.1 101 81.2
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 2.8e-43 178.7 101 80.2
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 2.8e-43 178.7 101 80.2
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.8e-43 178.7 101 81.2
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 3.7e-43 178.3 101 82.2
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 3.7e-43 178.3 101 81.2
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 3.7e-43 178.3 101 83.2
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 3.7e-43 178.3 101 82.2
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 3.7e-43 178.3 101 80.2
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 3.7e-43 178.3 101 81.2
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 4.8e-43 177.9 101 81.2
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 4.8e-43 177.9 101 81.2
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 4.8e-43 177.9 101 82.2
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 4.8e-43 177.9 101 80.2
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 6.3e-43 177.6 101 80.2
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 6.3e-43 177.6 101 80.2
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 6.3e-43 177.6 101 80.2
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 6.3e-43 177.6 101 81.2
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 6.3e-43 177.6 99 83.8
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.1e-42 176.8 101 81.2
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 1.1e-42 176.8 101 80.2
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 1.1e-42 176.8 100 81.0
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 1.1e-42 176.8 101 82.2
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 1.1e-42 176.8 101 81.2
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 1.4e-42 176.4 101 81.2
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 1.4e-42 176.4 101 81.2
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 1.8e-42 176.0 101 81.2
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 1.8e-42 176.0 108 77.8
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 1.8e-42 176.0 101 78.2
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 1.8e-42 176.0 101 78.2
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.4e-42 175.6 101 79.2
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 2.4e-42 175.6 101 80.2
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 2.4e-42 175.6 101 79.2
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 2.4e-42 175.6 101 80.2
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 3.1e-42 175.3 101 79.2
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 3.1e-42 175.3 101 79.2
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 5.3e-42 174.5 101 79.2
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 5.3e-42 174.5 101 79.2
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 5.3e-42 174.5 101 79.2
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 6.9e-42 174.1 101 78.2
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 6.9e-42 174.1 101 78.2
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 6.9e-42 174.1 101 78.2
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 9.0e-42 173.7 102 80.4
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 1.2e-41 173.3 101 78.2
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 1.2e-41 173.3 101 79.2
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 1.5e-41 172.9 100 82.0
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 2.6e-41 172.2 101 77.2
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 2.6e-41 172.2 101 79.2
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 2.6e-41 172.2 101 78.2
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 4.5e-41 171.4 100 79.0
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 4.5e-41 171.4 101 79.2
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 7.7e-41 170.6 100 84.0
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 3.8e-40 168.3 101 79.2
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 3.8e-40 168.3 101 75.2
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 3.8e-40 168.3 101 77.2
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 5.0e-40 167.9 101 76.2
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 6.5e-40 167.5 101 74.3
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 1.1e-39 166.8 101 77.2
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 1.4e-39 166.4 101 75.2
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 1.4e-39 166.4 101 75.2
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 2.5e-39 165.6 118 68.6
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 3.2e-39 165.2 128 65.6
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 9.4e-39 163.7 110 73.6
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 2.1e-38 162.5 101 74.3
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 6.1e-38 161.0 101 73.3
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 8.8e-37 157.1 101 70.3
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 4.3e-36 154.8 92 78.3
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 7.4e-36 154.1 94 77.7
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 1.7e-35 152.9 108 70.4
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 4.8e-35 151.4 101 67.3
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 1.4e-34 149.8 101 67.3
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 3.1e-34 148.7 101 66.3
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 3.1e-34 148.7 101 66.3
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.5e-33 146.4 101 65.3
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 5.9e-33 144.4 101 66.3
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 1.3e-32 143.3 101 63.4
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 1.7e-32 142.9 101 63.4
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 3.8e-32 141.7 101 63.4
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 3.8e-32 141.7 101 63.4
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 3.8e-32 141.7 101 63.4
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 3.2e-31 138.7 76 85.5
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 5.5e-31 137.9 100 68.0
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 1.2e-30 136.7 101 61.4
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 1.2e-30 136.7 101 61.4
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 4.7e-30 134.8 101 64.4
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 3.0e-29 132.1 77 80.5
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 1.5e-28 129.8 77 80.5
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 3.3e-28 128.6 85 68.2
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 1.2e-25 120.2 102 52.0
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 2.6e-25 119.0 77 71.4
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 5.9e-25 117.9 104 51.0
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 2.9e-24 115.5 69 79.7
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 5.5e-23 111.3 102 56.9
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 1.2e-22 110.2 87 59.8
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 1.2e-22 110.2 96 52.1
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.1e-22 109.4 130 46.9
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 3.3e-20 102.1 87 56.3
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.8e-18 96.3 102 52.0
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 2.0e-17 92.8 57 77.2
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 4.2e-15 85.1 79 53.2
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 3.6e-14 82.0 79 51.9
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 9.8e-12 73.9 76 52.6
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 5.9e-09 64.7 49 63.3
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 2.2e-08 62.8 59 49.2
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 4.2e-07 58.5 79 46.8
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 1.6e-06 56.6 76 35.5


User provided reference genes

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