Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22158 Brassica carinata HOM05D010845 ORTHO05D002692 3.7e-91 338.2 172 100.0
A02p10030 Brassica napus HOM05D010845 ORTHO05D002692 1.4e-77 293.1 172 87.2
BraA02t06071Z Brassica rapa HOM05D010845 ORTHO05D002692 1.4e-77 293.1 172 87.8
BolC2t07773H Brassica oleracea HOM05D010845 ORTHO05D002692 3.4e-76 288.5 174 87.4
BcaC03g14288 Brassica carinata HOM05D010845 ORTHO05D002692 1.4e-74 283.1 171 86.5
Sp6g16730 Schrenkiella parvula HOM05D010845 ORTHO05D002692 1.9e-63 246.1 173 78.0
BcaB08g35844 Brassica carinata HOM05D010845 ORTHO05D002692 5.6e-63 244.6 173 78.0
AL8G30220 Arabidopsis lyrata HOM05D010845 ORTHO05D002692 1.2e-60 236.9 173 76.3
Thhalv10015916m.g Eutrema salsugineum HOM05D010845 ORTHO05D002692 3.8e-59 231.9 172 74.4
AT5G54790 Arabidopsis thaliana HOM05D010845 ORTHO05D002692 2.4e-58 229.2 173 75.1
A10p12040 Brassica napus HOM05D010845 ORTHO05D002692 3.2e-58 228.8 174 74.1
C02p16670 Brassica napus HOM05D010845 ORTHO05D002692 2.7e-57 225.7 140 85.0
Carub.0008s1506 Capsella rubella HOM05D010845 ORTHO05D002692 1.8e-53 213.0 174 71.3
CARHR268130 Cardamine hirsuta HOM05D010845 ORTHO05D002692 3.2e-50 202.2 176 70.5
BolC9t57396H Brassica oleracea HOM05D010845 ORTHO05D002692 1.1e-45 187.2 143 74.8
BraA10t43305Z Brassica rapa HOM05D010845 ORTHO05D002692 2.9e-43 179.1 170 61.8
C09p45220 Brassica napus HOM05D010845 ORTHO05D002692 6.4e-43 177.9 140 72.1
Aa31LG3G10720 Aethionema arabicum HOM05D010845 ORTHO05D002692 1.2e-20 104.0 174 45.4
THA.LOC104813418 Tarenaya hassleriana HOM05D010845 ORTHO05D002692 5.1e-16 88.6 187 38.5
Duzib213G0532 Durio zibethinus HOM05D002846 ORTHO05D002692 5.7e-15 85.1 195 35.9
Gohir.A01G076300 Gossypium hirsutum HOM05D002846 ORTHO05D002692 1.5e-12 77.0 186 36.0
Actinidia27214 Actinidia chinensis HOM05D002846 ORTHO05D002692 3.4e-12 75.9 170 36.5
Peaxi162Scf00007g01016 Petunia axillaris HOM05D002846 ORTHO05D002692 3.4e-12 75.9 197 36.0
Peaxi162Scf00932g00218 Petunia axillaris HOM05D002846 ORTHO05D002692 4.5e-12 75.5 192 34.9
Gohir.D01G063800 Gossypium hirsutum HOM05D002846 ORTHO05D002692 7.7e-12 74.7 186 36.0
Gorai.002G084300 Gossypium raimondii HOM05D002846 ORTHO05D002692 1.7e-11 73.6 186 36.6
Sabra11G0121900 Salix brachista HOM05D002846 ORTHO05D002692 2.2e-11 73.2 186 34.4
Medtr2g083300 Medicago truncatula HOM05D002846 ORTHO05D002692 8.5e-11 71.2 164 39.6
TPR.G19979 Trifolium pratense HOM05D002846 ORTHO05D002692 8.5e-11 71.2 181 35.4
TWI36G0639 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 8.5e-11 71.2 192 34.4
FAN25G2313 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.1e-10 70.9 198 36.9
Hma1.2p1_0948F.1_g240490 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 1.9e-10 70.1 197 33.0
Nitab4.5_0003509g0040 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.9e-10 70.1 185 33.0
Atru.chr6.3164 Acer truncatum HOM05D002846 ORTHO05D002692 2.5e-10 69.7 220 31.8
Cfa020399 Carpinus fangiana HOM05D002846 ORTHO05D002692 2.5e-10 69.7 191 33.5
Potri.001G419400 Populus trichocarpa HOM05D002846 ORTHO05D002692 2.5e-10 69.7 204 34.8
TWI38G2122 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 2.5e-10 69.7 198 36.4
Potri.011G135700 Populus trichocarpa HOM05D002846 ORTHO05D002692 3.2e-10 69.3 205 33.7
TWI38G1873 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 3.2e-10 69.3 189 36.0
FAN14G0905 Fragaria x ananassa HOM05D002846 ORTHO05D002692 5.5e-10 68.6 168 35.7
Thecc.07G046400 Theobroma cacao HOM05D002846 ORTHO05D002692 5.5e-10 68.6 191 32.5
Sabra14G0115500 Salix brachista HOM05D002846 ORTHO05D002692 7.2e-10 68.2 193 35.2
Peaxi162Scf00462g00005 Petunia axillaris HOM05D002846 ORTHO05D002692 9.4e-10 67.8 192 33.3
Medtr2g088590 Medicago truncatula HOM05D002846 ORTHO05D002692 1.2e-09 67.4 166 33.7
Psat5g251520 Pisum sativum HOM05D002846 ORTHO05D002692 1.2e-09 67.4 155 34.2
QL08p012603 Quercus lobata HOM05D002846 ORTHO05D002692 1.2e-09 67.4 188 31.4
PGSC0003DMG400025494 Solanum tuberosum HOM05D002846 ORTHO05D002692 1.2e-09 67.4 180 33.9
TAR627G0783 Trochodendron aralioides HOM05D002846 ORTHO05D002692 1.2e-09 67.4 191 35.6
Dinv39698 Davidia involucrata HOM05D002846 ORTHO05D002692 1.6e-09 67.0 202 34.2
Potri.014G151900 Populus trichocarpa HOM05D002846 ORTHO05D002692 1.6e-09 67.0 194 35.1
Ciclev10018295m.g Citrus clementina HOM05D002846 ORTHO05D002692 2.7e-09 66.2 178 34.8
Nitab4.5_0001176g0060 Nicotiana tabacum HOM05D002846 ORTHO05D002692 2.7e-09 66.2 169 33.7
Thecc.02G312900 Theobroma cacao HOM05D002846 ORTHO05D002692 2.7e-09 66.2 182 33.0
ATR0697G184 Amborella trichopoda HOM05D002846 ORTHO05D002692 3.6e-09 65.9 163 36.8
CSS0004659 Camellia sinensis var. sinensis HOM05D002846 ORTHO05D002692 4.7e-09 65.5 202 29.7
Gohir.A12G156600 Gossypium hirsutum HOM05D002846 ORTHO05D002692 4.7e-09 65.5 180 31.7
Sp1g37670 Schrenkiella parvula HOM05D010922 ORTHO05D011067 4.7e-09 65.5 205 31.2
Gorai.008G172600 Gossypium raimondii HOM05D002846 ORTHO05D002692 6.1e-09 65.1 184 31.5
PGSC0003DMG400005270 Solanum tuberosum HOM05D002846 ORTHO05D002692 6.1e-09 65.1 186 33.9
TPR.G4201 Trifolium pratense HOM05D002846 ORTHO05D002692 6.1e-09 65.1 189 32.8
Actinidia05119 Actinidia chinensis HOM05D002846 ORTHO05D002692 8.0e-09 64.7 185 35.7
Gohir.D12G159433 Gossypium hirsutum HOM05D002846 ORTHO05D002692 8.0e-09 64.7 184 31.5
Gorai.013G163000 Gossypium raimondii HOM05D002846 ORTHO05D002692 8.0e-09 64.7 165 32.7
CAN.G1151.1 Capsicum annuum HOM05D002846 ORTHO05D002692 1.0e-08 64.3 216 31.5
ClCG05G014610 Citrullus lanatus HOM05D002846 ORTHO05D002692 1.0e-08 64.3 168 37.5
GSVIVG01030606001 Vitis vinifera HOM05D002846 ORTHO05D002692 1.0e-08 64.3 178 32.6
Gohir.A13G140400 Gossypium hirsutum HOM05D002846 ORTHO05D002692 1.4e-08 63.9 165 32.1
HanXRQChr05g0159181 Helianthus annuus HOM05D002846 ORTHO05D002692 1.4e-08 63.9 160 33.1
FvH4_6g43420 Fragaria vesca HOM05D002846 ORTHO05D002692 1.8e-08 63.5 180 35.0
FAN05G4571 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.8e-08 63.5 162 34.6
Psat5g264560 Pisum sativum HOM05D002846 ORTHO05D002692 1.8e-08 63.5 177 35.0
Sabra02G0175700 Salix brachista HOM05D002846 ORTHO05D002692 1.8e-08 63.5 200 36.0
Solyc12g005820.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 1.8e-08 63.5 171 35.1
Nitab4.5_0002083g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 2.3e-08 63.2 159 34.0
Nitab4.5_0015723g0010 Nicotiana tabacum HOM05D002846 ORTHO05D002692 2.3e-08 63.2 170 35.3
QL08p033485 Quercus lobata HOM05D002846 ORTHO05D002692 2.3e-08 63.2 177 32.2
Cc05_g04910 Coffea canephora HOM05D002846 ORTHO05D002692 3.0e-08 62.8 189 33.3
FAN09G0250 Fragaria x ananassa HOM05D002846 ORTHO05D002692 3.0e-08 62.8 171 32.7
HanXRQChr15g0496381 Helianthus annuus HOM05D002846 ORTHO05D002692 3.0e-08 62.8 192 30.2
Sopen12g001770 Solanum pennellii HOM05D002846 ORTHO05D002692 3.0e-08 62.8 169 34.9
Aqoxy4G01970 Aquilegia oxysepala HOM05D002846 ORTHO05D002692 3.9e-08 62.4 184 36.4
Lalb_Chr01g0005591 Lupinus albus HOM05D002846 ORTHO05D002692 3.9e-08 62.4 149 36.9
Manes.13G071601 Manihot esculenta HOM05D002846 ORTHO05D002692 3.9e-08 62.4 173 32.4
TPR.G4595 Trifolium pratense HOM05D002846 ORTHO05D002692 3.9e-08 62.4 173 30.6
CANSAT64G1541 Cannabis sativa HOM05D002846 ORTHO05D002692 5.2e-08 62.0 219 30.6
Cc05_g13390 Coffea canephora HOM05D002846 ORTHO05D002692 5.2e-08 62.0 189 31.7
CsaV3_3G023230 Cucumis sativus L. HOM05D002846 ORTHO05D002692 5.2e-08 62.0 185 30.3
BraA06t23488Z Brassica rapa HOM05D010922 ORTHO05D011067 6.7e-08 61.6 183 31.1
CARHR040970 Cardamine hirsuta HOM05D010922 ORTHO05D011067 6.7e-08 61.6 202 28.7
Lalb_Chr14g0367581 Lupinus albus HOM05D002846 ORTHO05D002692 6.7e-08 61.6 177 29.4
MELO3C018090.2 Cucumis melo HOM05D002846 ORTHO05D002692 8.8e-08 61.2 167 31.7
Lalb_Chr19g0135751 Lupinus albus HOM05D002846 ORTHO05D002692 8.8e-08 61.2 149 36.2
Sabra16G0285000 Salix brachista HOM05D002846 ORTHO05D002692 8.8e-08 61.2 206 31.1
FAN21G2316 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.1e-07 60.8 198 32.8
MD09G1107000 Malus domestica HOM05D002846 ORTHO05D002692 1.1e-07 60.8 199 30.7
Phvul.005G114400 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 1.1e-07 60.8 174 33.3
A06p02810 Brassica napus HOM05D010922 ORTHO05D011067 1.5e-07 60.5 181 30.4
BcaB07g33533 Brassica carinata HOM05D010922 ORTHO05D011067 2.0e-07 60.1 186 29.6
DCAR_019769 Daucus carota HOM05D002846 ORTHO05D002692 2.0e-07 60.1 162 34.0
Hma1.2p1_1344F.1_g277060 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 2.0e-07 60.1 155 33.5
Oeu041933.1 Olea europaea HOM05D002846 ORTHO05D002692 2.0e-07 60.1 185 31.4
AL1G58650 Arabidopsis lyrata HOM05D010922 ORTHO05D011067 2.6e-07 59.7 204 28.9
AT1G50930 Arabidopsis thaliana HOM05D010922 ORTHO05D011067 2.6e-07 59.7 205 28.3
EL10Ac4g07933 Beta vulgaris HOM05D019198 ORTHO05D002692 2.6e-07 59.7 198 28.8
Haze_09635 Corylus avellana HOM05D002846 ORTHO05D002692 2.6e-07 59.7 185 33.5
Nitab4.5_0000006g0090 Nicotiana tabacum HOM05D002846 ORTHO05D002692 2.6e-07 59.7 182 31.3
C06p06090 Brassica napus HOM05D010922 ORTHO05D011067 3.3e-07 59.3 183 31.1
BolC6t35722H Brassica oleracea HOM05D010922 ORTHO05D011067 3.3e-07 59.3 183 31.1
FAN02G4078 Fragaria x ananassa HOM05D002846 ORTHO05D002692 3.3e-07 59.3 173 32.9
Gohir.D13G145200 Gossypium hirsutum HOM05D002846 ORTHO05D002692 3.3e-07 59.3 161 34.8
Lalb_Chr03g0028801 Lupinus albus HOM05D002846 ORTHO05D002692 3.3e-07 59.3 173 33.5
ClCG02G008550 Citrullus lanatus HOM05D002846 ORTHO05D002692 5.7e-07 58.5 165 33.9
Dinv40727 Davidia involucrata HOM05D002846 ORTHO05D002692 5.7e-07 58.5 187 34.8
MSTRG.14152 Avicennia marina HOM05D002846 ORTHO05D002692 7.4e-07 58.2 169 29.6
CiPaw.11G185800 Carya illinoinensis HOM05D002846 ORTHO05D002692 7.4e-07 58.2 201 36.3
Duzib251G0618 Durio zibethinus HOM05D002846 ORTHO05D002692 9.7e-07 57.8 177 32.2
RhsimUnG0010900 Rhododendron simsii HOM05D002846 ORTHO05D002692 9.7e-07 57.8 196 32.1
RcHm_v2.0_Chr2g0159761 Rosa chinensis HOM05D002846 ORTHO05D002692 9.7e-07 57.8 181 33.1
THA.LOC104816923 Tarenaya hassleriana HOM05D010922 ORTHO05D011067 9.7e-07 57.8 78 43.6
Oeu027251.1 Olea europaea HOM05D002846 ORTHO05D002692 1.3e-06 57.4 158 29.7
Peaxi162Scf00407g00210 Petunia axillaris HOM05D002846 ORTHO05D002692 1.7e-06 57.0 165 31.5
Sed0016321 Sechium edule HOM05D002846 ORTHO05D002692 1.7e-06 57.0 177 33.9
Sopen07g026090 Solanum pennellii HOM05D002846 ORTHO05D002692 1.7e-06 57.0 146 32.2
AUR62037135 Chenopodium quinoa HOM05D002846 ORTHO05D002692 2.2e-06 56.6 187 32.1
Haze_12882 Corylus avellana HOM05D002846 ORTHO05D002692 2.2e-06 56.6 176 32.4
Glyma.12G194600 Glycine max HOM05D002846 ORTHO05D002692 2.8e-06 56.2 167 32.3
Manes.03G127850 Manihot esculenta HOM05D002846 ORTHO05D002692 2.8e-06 56.2 189 31.2
Prupe.4G205800 Prunus persica HOM05D002846 ORTHO05D002692 2.8e-06 56.2 179 30.7
TWI39G1011 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 2.8e-06 56.2 193 31.6
TAR624G1330 Trochodendron aralioides HOM05D002846 ORTHO05D002692 2.8e-06 56.2 182 33.0
vmacro12218 Vaccinium macrocarpon HOM05D002846 ORTHO05D002692 2.8e-06 56.2 193 33.2
FvH4_3g22010 Fragaria vesca HOM05D002846 ORTHO05D002692 3.7e-06 55.8 198 35.4
Nitab4.5_0001884g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 3.7e-06 55.8 166 31.3
PSO210G5289 Papaver somniferum HOM05D002846 ORTHO05D002692 3.7e-06 55.8 208 29.8
Solyc07g052460.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 3.7e-06 55.8 152 32.9
GSVIVG01001985001 Vitis vinifera HOM05D002846 ORTHO05D002692 3.7e-06 55.8 196 32.7
Aa31LG8G8340 Aethionema arabicum HOM05D002846 ORTHO05D002692 6.3e-06 55.1 164 29.3
ECA246G4222 Erigeron canadensis HOM05D002846 ORTHO05D002692 6.3e-06 55.1 154 31.8
Nn1g07065 Nelumbo nucifera HOM05D002846 ORTHO05D002692 6.3e-06 55.1 185 33.5
Cfa014424 Carpinus fangiana HOM05D002846 ORTHO05D002692 8.2e-06 54.7 183 34.4
Sed0000680 Sechium edule HOM05D002846 ORTHO05D002692 8.2e-06 54.7 175 32.6


User provided reference genes

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