Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 2.6e-161 572.0 294 100.0
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 9.0e-154 547.0 294 95.6
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 9.0e-154 547.0 294 95.6
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 1.5e-153 546.2 294 95.6
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 3.2e-151 538.5 294 94.2
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 8.7e-149 530.4 294 93.2
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.5e-148 529.6 294 92.9
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 1.0e-144 516.9 284 94.0
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 2.2e-144 515.8 295 90.5
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.1e-143 513.5 295 90.2
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 5.5e-143 511.1 293 91.5
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 1.0e-136 490.3 296 86.5
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 7.2e-127 457.6 295 80.0
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 8.0e-126 454.1 294 79.6
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 4.4e-124 448.4 294 78.2
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.3e-123 446.8 294 78.2
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.3e-123 446.8 294 78.2
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 3.7e-123 445.3 294 78.6
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 8.2e-123 444.1 294 77.9
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 3.1e-122 442.2 294 77.9
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 5.3e-122 441.4 294 78.2
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 9.1e-122 440.7 294 77.6
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 9.1e-122 440.7 294 76.9
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 9.1e-122 440.7 294 77.2
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.6e-121 439.9 294 77.2
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 2.0e-121 439.5 296 76.0
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 3.5e-121 438.7 294 76.2
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.0e-120 437.2 294 76.9
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 1.3e-120 436.8 294 76.2
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 2.9e-120 435.6 294 75.9
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 3.8e-120 435.3 292 77.4
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 3.8e-120 435.3 294 75.9
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 6.5e-120 434.5 294 76.5
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 1.5e-119 433.3 294 76.9
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.5e-119 433.3 292 77.1
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 1.5e-119 433.3 294 75.9
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 1.5e-119 433.3 294 75.9
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 1.5e-119 433.3 294 75.9
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 1.5e-119 433.3 292 77.1
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.9e-119 433.0 292 77.1
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 1.9e-119 433.0 295 76.6
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 1.9e-119 433.0 294 75.2
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 2.5e-119 432.6 292 76.4
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 2.5e-119 432.6 294 75.9
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 4.2e-119 431.8 288 76.4
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 7.2e-119 431.0 296 74.0
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 1.2e-118 430.3 296 73.3
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 2.1e-118 429.5 292 76.0
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 3.0e-117 425.6 296 74.0
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 5.2e-117 424.9 286 77.6
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 5.2e-117 424.9 295 74.2
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.2e-116 423.7 296 73.6
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 2.0e-116 422.9 286 77.3
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 3.4e-116 422.2 286 76.9
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 4.4e-116 421.8 299 73.2
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 1.1e-114 417.2 297 73.7
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 1.8e-114 416.4 297 73.4
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 2.4e-114 416.0 296 73.0
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.4e-114 416.0 294 74.8
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 3.1e-114 415.6 292 72.9
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 3.1e-114 415.6 293 74.7
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 5.4e-114 414.8 299 72.2
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 7.0e-114 414.5 296 73.0
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 1.2e-113 413.7 294 71.1
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 2.0e-113 412.9 296 72.6
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 2.7e-113 412.5 296 73.0
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 7.7e-113 411.0 294 73.5
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.0e-112 410.6 294 71.4
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.0e-112 410.6 294 71.4
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.7e-112 409.8 298 72.8
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 1.7e-112 409.8 299 70.9
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.2e-112 409.5 294 71.1
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 2.2e-112 409.5 294 71.1
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 3.8e-112 408.7 294 72.4
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 3.8e-112 408.7 294 72.4
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 8.5e-112 407.5 298 71.5
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 8.5e-112 407.5 294 71.1
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 8.5e-112 407.5 294 71.1
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 8.5e-112 407.5 299 69.6
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 8.5e-112 407.5 292 74.7
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 1.5e-111 406.8 292 72.3
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 1.9e-111 406.4 294 70.7
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 5.5e-111 404.8 292 71.9
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 1.2e-110 403.7 297 71.7
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 1.2e-110 403.7 294 72.8
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 1.6e-110 403.3 296 70.6
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.7e-110 402.5 294 70.4
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 2.7e-110 402.5 294 72.4
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 3.6e-110 402.1 293 70.3
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 4.7e-110 401.7 292 72.6
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 4.7e-110 401.7 292 73.3
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 6.1e-110 401.4 292 71.6
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 8.0e-110 401.0 292 72.3
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.4e-109 400.2 292 72.9
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 1.4e-109 400.2 292 70.5
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 4.0e-109 398.7 295 71.2
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 6.8e-109 397.9 294 70.4
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 6.8e-109 397.9 292 71.6
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 2.6e-108 396.0 292 70.9
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 3.4e-108 395.6 297 70.0
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 3.4e-108 395.6 292 69.5
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 3.4e-108 395.6 292 69.5
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 4.4e-108 395.2 293 70.0
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 9.8e-108 394.0 292 69.9
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 1.7e-107 393.3 297 70.4
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 3.7e-107 392.1 292 71.2
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 4.9e-107 391.7 300 70.0
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 6.3e-107 391.3 298 70.8
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 8.3e-107 391.0 293 71.3
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 1.8e-106 389.8 300 69.7
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 2.4e-106 389.4 286 71.0
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 3.1e-106 389.0 285 70.2
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 9.2e-106 387.5 294 70.4
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 1.6e-105 386.7 285 70.9
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 4.5e-105 385.2 280 73.9
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 4.5e-105 385.2 295 69.2
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 7.7e-105 384.4 295 69.2
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 1.3e-104 383.6 287 69.3
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.7e-104 383.3 216 93.1
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 5.0e-104 381.7 298 67.4
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 8.6e-104 380.9 292 68.5
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 1.1e-103 380.6 297 69.4
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 9.5e-103 377.5 298 66.8
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 2.8e-102 375.9 298 69.1
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 2.3e-101 372.9 288 69.8
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 3.0e-101 372.5 274 70.4
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 5.7e-100 368.2 304 64.8
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 8.3e-99 364.4 288 66.0
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 3.2e-98 362.5 293 68.3
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 2.0e-97 359.8 291 64.9
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 2.7e-97 359.4 298 66.8
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 2.7e-97 359.4 297 63.6
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 9.5e-95 350.9 303 64.0
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 3.6e-94 349.0 300 62.0
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.0e-93 347.4 303 63.0
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 1.2e-92 344.0 293 64.5
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 2.6e-92 342.8 295 64.7
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.7e-91 340.1 292 64.7
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 2.9e-91 339.3 295 63.1
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 6.4e-91 338.2 295 62.0
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 2.7e-89 332.8 295 61.7
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 5.0e-88 328.6 264 65.2
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 6.2e-86 321.6 294 60.9
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.6e-84 316.2 247 67.2
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 3.4e-84 315.8 292 60.3
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 1.6e-78 297.0 282 57.8
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 6.0e-73 278.5 283 54.8
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 5.1e-72 275.4 270 55.6
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 5.1e-64 248.8 197 69.5
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 1.4e-61 240.7 143 81.8
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 5.8e-60 235.3 275 52.7
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 9.9e-60 234.6 279 51.6
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 1.7e-59 233.8 283 47.0
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 1.6e-49 200.7 128 73.4
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 6.7e-48 195.3 150 65.3
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 6.9e-45 185.3 169 62.1
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 3.7e-38 162.9 147 62.6
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 3.9e-24 116.3 102 66.7
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 1.5e-23 114.4 333 27.0
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 4.8e-22 109.4 109 58.7
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 1.8e-21 107.5 109 57.8
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 7.7e-20 102.1 85 65.9
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 5.5e-18 95.9 99 58.6
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 8.8e-16 88.6 73 60.3
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 7.5e-07 58.9 88 46.6
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 9.7e-07 58.5 72 50.0


User provided reference genes

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