Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 8.5e-284 979.5 459 100.0
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 1.6e-277 958.7 459 96.9
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 1.3e-276 955.7 459 96.7
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 2.9e-276 954.5 459 96.5
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 9.4e-275 949.5 452 97.1
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 9.4e-275 949.5 452 97.1
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 5.7e-272 940.3 459 95.2
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 7.7e-269 929.9 453 94.5
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 1.2e-266 922.5 455 93.6
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 4.7e-266 920.6 457 93.7
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 5.2e-265 917.1 457 93.4
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 7.5e-264 913.3 457 92.6
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 5.0e-252 874.0 444 89.4
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 1.9e-238 828.9 433 86.8
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 9.5e-235 816.6 442 82.8
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 2.1e-234 815.5 452 82.7
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 4.7e-234 814.3 442 82.8
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 1.1e-233 813.1 442 82.4
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 1.8e-233 812.4 439 84.1
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 5.2e-233 810.8 432 85.9
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 1.2e-232 809.7 453 82.3
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 1.5e-232 809.3 433 84.3
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 4.4e-232 807.7 445 82.9
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 4.4e-232 807.7 446 83.0
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 5.8e-232 807.4 450 81.6
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 2.2e-231 805.4 445 82.9
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 3.7e-231 804.7 445 82.2
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 6.4e-231 803.9 445 82.5
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 6.4e-231 803.9 439 82.9
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 1.9e-230 802.4 444 82.7
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 1.9e-230 802.4 462 79.7
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 4.1e-230 801.2 433 83.4
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 9.2e-230 800.0 430 84.2
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 1.2e-229 799.7 446 81.8
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 2.1e-229 798.9 452 80.5
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 3.5e-229 798.1 446 81.4
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 7.8e-229 797.0 441 81.4
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 7.8e-229 797.0 462 80.3
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 7.8e-229 797.0 433 82.2
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 1.3e-228 796.2 449 79.5
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.7e-228 795.8 436 82.1
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 2.3e-228 795.4 433 82.7
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 2.3e-228 795.4 439 82.2
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 3.0e-228 795.0 459 83.4
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 3.0e-228 795.0 436 81.4
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 5.1e-228 794.3 444 81.5
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 5.1e-228 794.3 432 82.9
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 5.1e-228 794.3 450 80.7
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 6.6e-228 793.9 443 81.9
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 1.9e-227 792.3 433 83.1
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 3.3e-227 791.6 435 83.0
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 3.3e-227 791.6 444 81.1
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 4.3e-227 791.2 443 81.7
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 7.3e-227 790.4 441 81.4
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 7.3e-227 790.4 435 83.7
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 9.6e-227 790.0 434 82.7
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 3.6e-226 788.1 431 82.1
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 4.7e-226 787.7 434 82.5
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 4.7e-226 787.7 429 83.2
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 8.1e-226 786.9 449 80.0
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 1.4e-225 786.2 432 82.6
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 3.1e-225 785.0 432 81.7
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 4.0e-225 784.6 443 80.6
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 1.5e-224 782.7 471 76.4
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 5.8e-224 780.8 431 81.4
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 7.6e-224 780.4 432 81.7
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.3e-223 779.6 448 79.5
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 1.3e-223 779.6 432 81.2
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 4.2e-222 774.6 434 80.6
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 4.2e-222 774.6 429 82.3
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 3.5e-221 771.5 432 81.2
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 3.5e-221 771.5 432 81.2
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 3.5e-221 771.5 432 81.0
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 4.6e-221 771.2 432 81.5
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 1.3e-220 769.6 433 79.2
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.7e-220 769.2 465 76.1
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 3.9e-220 768.1 448 78.1
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 3.9e-220 768.1 437 81.0
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 1.1e-219 766.5 433 79.2
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 3.3e-219 765.0 469 74.8
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 3.3e-219 765.0 469 74.8
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 4.8e-218 761.1 432 79.9
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 3.4e-216 755.0 434 80.2
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 7.6e-216 753.8 468 74.8
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 9.9e-216 753.4 451 77.2
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 6.4e-215 750.7 436 79.8
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 4.6e-213 744.6 438 75.8
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 2.5e-211 738.8 439 77.0
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 5.3e-209 731.1 446 76.7
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 1.2e-208 729.9 468 73.9
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 5.8e-208 727.6 384 86.7
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 6.0e-205 717.6 433 77.1
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 1.8e-204 716.1 378 85.7
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 1.1e-201 706.8 432 74.8
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 3.9e-196 688.3 397 79.3
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 2.1e-194 682.6 438 70.8
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 5.5e-190 667.9 424 70.3
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 6.7e-188 661.0 438 69.2
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 8.5e-183 644.0 452 69.2
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 6.5e-175 617.8 415 70.1
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 5.2e-172 608.2 432 64.8
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 2.6e-163 579.3 321 81.3
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 1.1e-161 573.9 310 84.2
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 1.1e-158 563.9 443 61.9
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 4.0e-156 555.4 300 83.3
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 4.1e-153 545.4 376 69.7
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 1.7e-151 540.0 457 59.3
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 1.5e-147 526.9 284 83.8
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 7.0e-129 464.9 276 77.5
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 6.7e-95 352.1 434 51.2
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.8e-79 300.8 196 74.0
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 2.8e-77 293.5 302 56.6
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 3.0e-71 273.5 159 77.4
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 4.8e-69 266.2 132 89.4
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 6.5e-66 255.8 160 71.9
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 4.4e-62 243.0 230 55.2
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 9.7e-62 241.9 133 82.7
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 1.3e-61 241.5 133 82.7
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 5.3e-60 236.1 132 81.1
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.2e-56 224.9 120 85.8
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 2.5e-49 200.7 249 50.2
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 8.8e-47 192.2 119 74.8
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.2e-46 191.8 114 71.1
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 7.0e-36 156.0 182 51.1
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 5.7e-30 136.3 94 68.1
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 8.0e-24 115.9 90 58.9
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 2.2e-21 107.8 61 77.0
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 4.9e-21 106.7 78 64.1
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 8.3e-21 105.9 55 81.8
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 4.6e-19 100.1 105 48.6
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 1.6e-16 91.7 68 63.2
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 9.5e-09 65.9 54 59.3
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 4.7e-08 63.5 43 65.1


User provided reference genes

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