Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 6.3e-45 183.7 92 100.0
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 2.6e-22 108.6 75 74.7
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 2.6e-22 108.6 75 74.7
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 9.8e-22 106.7 75 73.3
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 2.8e-21 105.1 73 75.3
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 6.3e-21 104.0 68 77.9
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 3.1e-20 101.7 68 76.5
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 4.5e-19 97.8 70 72.9
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 2.2e-18 95.5 70 71.4
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 1.4e-15 86.3 84 59.5
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 9.8e-14 80.1 65 67.7
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 9.2e-12 73.6 57 63.2
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 9.2e-12 73.6 57 63.2
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 1.2e-11 73.2 73 50.7
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 2.0e-11 72.4 57 63.2
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 2.0e-11 72.4 57 63.2
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 2.0e-11 72.4 57 63.2
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 2.0e-11 72.4 54 66.7
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 2.0e-11 72.4 57 63.2
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 2.7e-11 72.0 57 61.4
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 3.5e-11 71.6 57 61.4
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 5.9e-11 70.9 57 61.4
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 7.8e-11 70.5 57 61.4
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 7.8e-11 70.5 93 48.4
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 1.3e-10 69.7 57 59.6
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 1.7e-10 69.3 70 51.4
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 1.7e-10 69.3 84 44.0
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 3.8e-10 68.2 57 56.1
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 5.0e-10 67.8 68 48.5
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 8.6e-10 67.0 57 59.6
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 1.1e-09 66.6 57 57.9
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 1.1e-09 66.6 71 52.1
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 1.1e-09 66.6 83 47.0
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 2.5e-09 65.5 67 47.8
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 2.5e-09 65.5 55 52.7
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 2.5e-09 65.5 57 56.1
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 2.5e-09 65.5 57 56.1
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 2.5e-09 65.5 57 56.1
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 3.3e-09 65.1 57 54.4
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 3.3e-09 65.1 67 47.8
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 3.3e-09 65.1 71 46.5
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 4.3e-09 64.7 57 56.1
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 4.3e-09 64.7 57 52.6
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 5.6e-09 64.3 57 54.4
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 5.6e-09 64.3 57 54.4
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 5.6e-09 64.3 55 56.4
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 7.3e-09 63.9 55 54.5
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 9.5e-09 63.5 57 52.6
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 9.5e-09 63.5 57 54.4
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 9.5e-09 63.5 86 43.0
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 1.2e-08 63.2 57 54.4
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 2.1e-08 62.4 85 44.7
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 2.1e-08 62.4 86 41.9
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 2.1e-08 62.4 57 54.4
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 2.1e-08 62.4 57 52.6
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 2.8e-08 62.0 56 58.9
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 2.8e-08 62.0 55 52.7
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 2.8e-08 62.0 55 56.4
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 2.8e-08 62.0 57 50.9
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 2.8e-08 62.0 52 55.8
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 2.8e-08 62.0 57 50.9
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 3.6e-08 61.6 58 53.4
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 3.6e-08 61.6 81 38.3
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 3.6e-08 61.6 57 54.4
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 4.7e-08 61.2 55 56.4
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 4.7e-08 61.2 57 52.6
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 6.1e-08 60.8 79 45.6
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 6.1e-08 60.8 85 44.7
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 6.1e-08 60.8 57 50.9
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 6.1e-08 60.8 57 52.6
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 1.0e-07 60.1 57 54.4
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 1.4e-07 59.7 74 45.9
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 1.4e-07 59.7 57 52.6
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.4e-07 59.7 52 55.8
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 2.3e-07 58.9 52 55.8
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 2.3e-07 58.9 57 50.9
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 3.0e-07 58.5 52 55.8
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 3.0e-07 58.5 52 55.8
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 3.0e-07 58.5 52 55.8
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 4.0e-07 58.2 87 40.2
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 4.0e-07 58.2 86 44.2
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 4.0e-07 58.2 57 49.1
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 5.2e-07 57.8 61 52.5
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 6.8e-07 57.4 83 43.4
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 6.8e-07 57.4 89 39.3
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 8.9e-07 57.0 55 50.9
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 8.9e-07 57.0 56 58.9
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 8.9e-07 57.0 50 54.0
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 8.9e-07 57.0 85 42.4
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 1.2e-06 56.6 71 46.5
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 1.2e-06 56.6 79 45.6
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 1.5e-06 56.2 50 54.0
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 1.5e-06 56.2 88 38.6
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.5e-06 56.2 50 54.0
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 1.5e-06 56.2 55 50.9
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 2.0e-06 55.8 59 54.2
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 2.0e-06 55.8 54 51.9
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 2.6e-06 55.5 59 52.5
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 2.6e-06 55.5 57 47.4
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 2.6e-06 55.5 57 47.4
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 4.4e-06 54.7 51 52.9
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 9.8e-06 53.5 50 50.0


User provided reference genes

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