Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 2.1e-39 165.2 83 100.0
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 2.7e-23 111.7 86 73.3
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 2.7e-23 111.7 86 73.3
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 1.0e-22 109.8 86 72.1
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 1.0e-22 109.8 85 72.9
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 5.2e-22 107.5 68 82.4
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 6.7e-22 107.1 85 72.9
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 2.5e-16 88.6 85 62.4
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 4.2e-16 87.8 72 66.7
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 7.2e-16 87.0 72 66.7
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.8e-14 82.4 85 58.8
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 2.3e-14 82.0 65 67.7
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 2.6e-13 78.6 91 51.6
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 2.2e-12 75.5 52 69.2
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 3.7e-12 74.7 52 69.2
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 3.7e-12 74.7 52 69.2
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 8.3e-12 73.6 52 67.3
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 1.4e-11 72.8 52 67.3
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 1.8e-11 72.4 52 65.4
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 1.8e-11 72.4 98 48.0
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 2.4e-11 72.0 45 73.3
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 2.4e-11 72.0 49 65.3
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 4.1e-11 71.2 52 67.3
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 5.4e-11 70.9 82 50.0
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 9.1e-11 70.1 52 65.4
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 2.0e-10 68.9 86 48.8
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 2.0e-10 68.9 79 50.6
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 2.7e-10 68.6 84 47.6
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 2.7e-10 68.6 87 49.4
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 3.5e-10 68.2 79 48.1
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 4.5e-10 67.8 52 63.5
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 5.9e-10 67.4 86 47.7
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 1.0e-09 66.6 83 45.8
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 1.3e-09 66.2 84 46.4
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 2.9e-09 65.1 83 48.2
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 3.8e-09 64.7 102 43.1
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 6.5e-09 63.9 79 50.6
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 6.5e-09 63.9 95 43.2
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 1.1e-08 63.2 83 45.8
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 1.5e-08 62.8 46 60.9
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.5e-08 62.8 49 67.3
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 4.2e-08 61.2 52 57.7
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 4.2e-08 61.2 95 43.2
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 7.2e-08 60.5 101 43.6
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 9.4e-08 60.1 48 60.4
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 9.4e-08 60.1 91 42.9
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 1.2e-07 59.7 93 41.9
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 1.2e-07 59.7 90 43.3
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 1.2e-07 59.7 99 42.4
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 1.2e-07 59.7 44 59.1
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 1.2e-07 59.7 83 42.2
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 1.2e-07 59.7 49 53.1
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 1.6e-07 59.3 89 40.4
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 2.1e-07 58.9 90 43.3
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 2.1e-07 58.9 95 43.2
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 2.1e-07 58.9 88 43.2
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 2.7e-07 58.5 93 40.9
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 2.7e-07 58.5 84 42.9
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 3.6e-07 58.2 89 41.6
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 3.6e-07 58.2 50 54.0
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 3.6e-07 58.2 95 41.1
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 4.7e-07 57.8 102 42.2
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 4.7e-07 57.8 65 46.2
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 6.1e-07 57.4 49 53.1
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 8.0e-07 57.0 50 52.0
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 8.0e-07 57.0 46 54.3
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 8.0e-07 57.0 46 54.3
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 8.0e-07 57.0 46 54.3
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 1.0e-06 56.6 93 40.9
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 1.0e-06 56.6 93 38.7
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.4e-06 56.2 85 42.4
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 1.4e-06 56.2 45 60.0
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 1.4e-06 56.2 44 56.8
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 1.8e-06 55.8 90 44.4
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 1.8e-06 55.8 99 40.4
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.8e-06 55.8 44 56.8
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 1.8e-06 55.8 44 54.5
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 2.3e-06 55.5 96 35.4
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 2.3e-06 55.5 96 35.4
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 2.3e-06 55.5 46 52.2
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 2.3e-06 55.5 41 61.0
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 2.3e-06 55.5 88 43.2
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 3.0e-06 55.1 95 44.2
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 3.0e-06 55.1 96 35.4
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 3.0e-06 55.1 41 61.0
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 3.0e-06 55.1 41 58.5
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 3.0e-06 55.1 95 38.9
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 6.8e-06 53.9 50 50.0
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 6.8e-06 53.9 48 54.2
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 8.8e-06 53.5 93 37.6
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 8.8e-06 53.5 41 56.1


User provided reference genes

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